Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010295

Physical Location & Seq

Genomic Coordinates Reverse (-)

1796852 .. 1797659

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g02840.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTATTTGTCAAAGCAAAGGATGTACCAACAACAACAGCTGCTCGAGTATCGTCAACCAGCCAAAGAAGGGTCCGGACTTCTTGGCCATTTTTGCATGTCTTTGGCTCATCGAATCTTTTCAAACAAAGTTCTTACAGAGCTGGAAAATTTGGTTAAAGGGGTACCATATCTGCAGCTGTTATCTCAACCCACTTGGCATTCGCAGACATCATCATGGATGCTCTCTGTGAAGATTCCTGAATCCATTCTACATGGATGTCAAACCCGAGCATCTGACATGCGTCATGTGGGGAACGTTGCCAAGTCTCAGTTTCATACTCAGGTGGTTGTAACAGATGATTGCCTCGATGTAGAAGGGGAAGGTGCTCCGAATATGGTTGGCCTGTTCAATGGGAATTCTGAGGAAATTTGTTCAATGAACAGATACGACTGCAACTTGGCAGATCTACCTGTGATAATTTTGCAGCAGTTGCAGGTCAAGTTATTCGCTGGCTTCACGAAGAAGCTCTTGCAGTTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016592 GO:0019222 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med17

Protein Analysis

175

Amino Acids

19.7

Weight (kDa)

6.58

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20170
fragaria_vesca	FvH4_5g23630 FvH4_5g23630 FvH4_5g23630 FvH4_5g23630
malus_domestica	MD02G1034800.v1.1 MD15G1175600.v1.1
prunus_persica	Prupe.7G240500_v2.0.a1
pyrus_communis	pycom02g02840 pycom15g15710
rosa_chinensis	RchiOBHm_Chr7g0212931
rosa_laevigata	RLG00000002843
rosa_multiflora	Rmu_co8301145.1_g000001 Rmu_sc0001684.1_g000012
rosa_roxburghii	Rroxscaffold_3G00246410
rosa_rugosa	Rorug07G0138300
rosa_samantha	Rh7AG269500 Rh7BG265000 Rh7CG288700 Rh7DG277600
rosa_wichuraiana	Rw7G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
Acc65I	GGTACC	1 cut(s)	163
AccB1I	GGYRCC	1 cut(s)	163
AccIII	TCCGGA	1 cut(s)	74
AclI	AACGTT	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	3 cut(s)	148, 397, 408
AfaI	GTAC	2 cut(s)	26, 165
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	3 cut(s)	123, 391, 417
AluBI	AGCT	4 cut(s)	40, 142, 178, 508
AluI	AGCT	4 cut(s)	40, 142, 178, 508
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	1 cut(s)	312
Ama87I	CYCGRG	2 cut(s)	44, 267
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	2 cut(s)	85, 382
ApeKI	GCWGC	3 cut(s)	40, 175, 466
ApoI	RAATTY	3 cut(s)	148, 397, 408
Asp700I	GAANNNNTTC	2 cut(s)	118, 246
Asp718I	GGTACC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	72
AvaI	CYCGRG	2 cut(s)	44, 267
AvaII	GGWCC	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	3 cut(s)	27, 187, 478
BcoDI	GTCTC	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	466
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	3 cut(s)	41, 176, 467
BlsI	GCNGC	3 cut(s)	42, 177, 468
Bme18I	GGWCC	1 cut(s)	72
BmeT110I	CYCGRG	2 cut(s)	44, 267
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	73, 165
BmsI	GCATC	2 cut(s)	210, 281
BoxI	GACNNNNGTC	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
BseAI	TCCGGA	1 cut(s)	74
BseGI	GGATG	3 cut(s)	27, 225, 263
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	3 cut(s)	323, 335, 393
BseXI	GCAGC	3 cut(s)	27, 187, 478
BshFI	GGCC	2 cut(s)	87, 384
BshNI	GGYRCC	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	370
BsiHKCI	CYCGRG	2 cut(s)	44, 267
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	87, 384
BsoBI	CYCGRG	2 cut(s)	44, 267
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	445
BspANI	GGCC	2 cut(s)	87, 384
BspCNI	CTCAG	3 cut(s)	322, 334, 394
BspEI	TCCGGA	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	73, 165
BspMAI	CTGCAG	1 cut(s)	177
BspMI	ACCTGC	1 cut(s)	466
BspT107I	GGYRCC	1 cut(s)	163
BssMI	GATC	1 cut(s)	445
BstAPI	GCANNNNNTGC	1 cut(s)	472
BstC8I	GCNNGC	1 cut(s)	493
BstDEI	CTNAG	3 cut(s)	309, 321, 402
BstF5I	GGATG	3 cut(s)	27, 225, 263
BstKTI	GATC	1 cut(s)	448
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	1 cut(s)	445
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 472
BstNSI	RCATGY	2 cut(s)	100, 283
BstPAI	GACNNNNGTC	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	173
BstV1I	GCAGC	3 cut(s)	27, 187, 478
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	87, 384
BtsCI	GGATG	3 cut(s)	27, 225, 263
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	493
Cfr13I	GGNCC	1 cut(s)	72
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	25, 164
CviAII	CATG	5 cut(s)	97, 216, 254, 280, 287
CviJI	RGCY	9 cut(s)	40, 62, 87, 107, 142, 178, 384, 495, 508
CviKI_1	RGCY	9 cut(s)	40, 62, 87, 107, 142, 178, 384, 495, 508
CviQI	GTAC	2 cut(s)	25, 164
DdeI	CTNAG	3 cut(s)	309, 321, 402
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
EaeI	YGGCCR	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	72
Eco88I	CYCGRG	2 cut(s)	44, 267
EcoRI	GAATTC	1 cut(s)	397
FaeI	CATG	5 cut(s)	100, 219, 257, 283, 290
FaiI	YATR	8 cut(s)	98, 169, 217, 255, 281, 288, 318, 377
FalI	AAGNNNNNCTT	1 cut(s)	494
FatI	CATG	5 cut(s)	96, 215, 253, 279, 286
Fnu4HI	GCNGC	3 cut(s)	41, 176, 467
FokI	GGATG	3 cut(s)	34, 232, 270
Fsp4HI	GCNGC	3 cut(s)	41, 176, 467
GluI	GCNGC	3 cut(s)	41, 176, 467
HaeIII	GGCC	2 cut(s)	87, 384
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	272
Hin1II	CATG	5 cut(s)	100, 219, 257, 283, 290
HincII	GTYRAC	1 cut(s)	56
HindII	GTYRAC	1 cut(s)	56
HinfI	GANTC	3 cut(s)	114, 235, 242
HpaII	CCGG	1 cut(s)	75
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	3 cut(s)	277, 372, 403
Hpy188III	TCNNGA	3 cut(s)	75, 239, 499
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	62, 350, 356
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	6 cut(s)	96, 175, 435, 466, 475, 514
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 472
HpyF3I	CTNAG	3 cut(s)	309, 321, 402
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	5 cut(s)	100, 219, 257, 283, 290
Kpn2I	TCCGGA	1 cut(s)	74
KpnI	GGTACC	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	445
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	9 cut(s)	72, 88, 128, 252, 308, 398, 461, 465, 477
Lsp1109I	GCAGC	3 cut(s)	27, 187, 478
LweI	GCATC	2 cut(s)	210, 281
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	2 cut(s)	244, 514
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	370
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	4 cut(s)	148, 397, 408, 459
MluNI	TGGCCA	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	2 cut(s)	356, 397
Mox20I	TGGCCA	1 cut(s)	87
MroI	TCCGGA	1 cut(s)	74
MroXI	GAANNNNTTC	2 cut(s)	118, 246
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	214
Msp20I	TGGCCA	1 cut(s)	87
MspA1I	CMGCKG	2 cut(s)	40, 178
MspI	CCGG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	199
MwoI	GCNNNNNNNGC	2 cut(s)	93, 472
NdeII	GATC	1 cut(s)	445
NlaIII	CATG	5 cut(s)	100, 219, 257, 283, 290
NlaIV	GGNNCC	2 cut(s)	73, 165
NspI	RCATGY	2 cut(s)	100, 283
PaeR7I	CTCGAG	1 cut(s)	44
PctI	GAATGC	1 cut(s)	199
PdmI	GAANNNNTTC	2 cut(s)	118, 246
PfeI	GAWTC	3 cut(s)	114, 235, 242
PkrI	GCNGC	3 cut(s)	42, 177, 468
PshAI	GACNNNNGTC	1 cut(s)	282
Psp1406I	AACGTT	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	73, 165
PspPI	GGNCC	1 cut(s)	72
PspXI	VCTCGAGB	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	445
PvuII	CAGCTG	2 cut(s)	40, 178
RsaI	GTAC	2 cut(s)	26, 165
RsaNI	GTAC	2 cut(s)	25, 164
RseI	CAYNNNNRTG	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	41, 176, 467
Sau3AI	GATC	1 cut(s)	445
Sau96I	GGNCC	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	9 cut(s)	42, 144, 180, 300, 327, 367, 454, 480, 510
SfaNI	GCATC	2 cut(s)	210, 281
SfcI	CTRYAG	1 cut(s)	173
Sfr274I	CTCGAG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	4 cut(s)	148, 397, 408, 459
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	3 cut(s)	45, 112, 348
TasI	AATT	4 cut(s)	148, 397, 408, 459
TfiI	GAWTC	3 cut(s)	114, 235, 242
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	3 cut(s)	40, 175, 466
TspDTI	ATGAA	2 cut(s)	305, 434
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	3 cut(s)	148, 397, 408
XceI	RCATGY	2 cut(s)	100, 283
XhoI	CTCGAG	1 cut(s)	44
XmnI	GAANNNNTTC	2 cut(s)	118, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.