Rmu_sc0001684.1_g000012

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001684.1
Physical Location & Seq
Reverse (-)
65154 .. 68019
2866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001684.1_g000012.1.cds

Sequence Viewer

Length: 1644 bp
atgacccggccgaggccatttcctaatgaagctgtgtctgatcttgctgtgtctgccgccaccaagctacaatgcttccgacatcttggaaaatactttaagcagtctgccaatgctttggagcaacagatggccagggaagcaagattttatggtgcactaatcagattgcagcagaactggaaagttaagcggcagcgtgcagtagctttagcttctggaaatgaaggcttcaccatagacctgtttgacaattcattatatgatcctgctggaatctttaggccatcccctctgtctacagtttgtgttgaccatgactcagctggcatgctggcgataaatttacctccaaagtcatatcgctctcttcagtttggttttctcagtgcttatacagatgatatgccaattgattccagtaaaaccaaaactcaatccgcatgtgatgctgacaaagaatctgtaagtgatgacgagtgtgttaaagaaacgcattcacttcttcgtgaagtccatcaagcgatcttcagtgatcaggtatttgacttggtaaatcgtgaagcatgtaaccaatcattaggagtcactgttactggaatacaggaaaactatatacaattgaatataggtcaagaaacctctgtgttcatatcccttgtcccaactagtcaaggtgaggaaacagttgatagtctaagcacccagaatttagagaatgcaattctacctttggatacactggatggactgaatttaccagaggataaaccggatacccccaagaaaaagtcagtaattcccaaccaaattagttgtgaaatatatctgctacagatatttcaccagcatgtatttctcaaagctaaggatagacccacttccggaggtggagtatctggccaaccggcaaaagaagggtctggtcttcttggtcacttctgcatgtctttggctcatcggatattttcaaacaaagttctaatggagctggaaaatgtggttagaggtgtaccatatatgcagttgacatctcatcccacttggcattcacggacatcgtcatggacactctttgtgaagatacctcaatctattctacatgcatgccaaacccgagcatcagactcacatcagaggaagcatgttaccaagtctcagtttcatactaaggtggttgtaactgatgattgcatcaatgtcgaaggggaaggtgctcctaatgttgtaggcctgttcaaagggacttcccaggaaatctgttcaatgaatagatatgactgtgatttggccgatctttctgtgataattttacagcaggttgcaagccaagttatacgctggctccacgaagaagctctaatggttggaataaaagcaaactgggacttcctatgtttgtcttttgagctggagcagggtgaaacgctaagcttggtggcacatgtggatccagaagatactgaaggatgcatctcgtggtggttggtcatggaggatggttttgtagaagaacgaaaactcagtttggacatctcggatggtgcatctgagtctaggaagttcttaggccatctatccctggaagtgttatattcgacaatgatggacttggttggcttgtgcaatggaggtggtaactga

Protein Analysis

547

Amino Acids

60.69

Weight (kDa)

5.3

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1309
AccI GTMKAC 1 cut(s) 299
AccIII TCCGGA 1 cut(s) 884
AciI CCGC 3 cut(s) 57, 193, 441
AclWI GGATC 3 cut(s) 260, 1445, 1458
AcoI YGGCCR 4 cut(s) 8, 132, 901, 1290
AcsI RAATTY 3 cut(s) 343, 709, 754
AcuI CTGAAG 3 cut(s) 356, 514, 1485
AfaI GTAC 1 cut(s) 1014
AfiI CCNNNNNNNGG 2 cut(s) 12, 884
AflIII ACRYGT 1 cut(s) 1444
AgsI TTSAA 4 cut(s) 625, 972, 1240, 1266
AhlI ACTAGT 1 cut(s) 668
AjnI CCWGG 3 cut(s) 134, 1251, 1581
Alw21I GWGCWC 2 cut(s) 160, 1219
Alw26I GTCTC 1 cut(s) 1161
Alw44I GTGCAC 1 cut(s) 156
AlwI GGATC 3 cut(s) 260, 1445, 1458
Ama87I CYCGRG 1 cut(s) 1116
Aor13HI TCCGGA 1 cut(s) 884
AoxI GGCC 8 cut(s) 8, 14, 132, 284, 901, 1231, 1290, 1570
ApaLI GTGCAC 1 cut(s) 156
ApeKI GCWGC 2 cut(s) 172, 196
ApoI RAATTY 3 cut(s) 343, 709, 754
ArsI GACNNNNNNTTYG 2 cut(s) 905, 937
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 4 cut(s) 226, 689, 836, 1433
AvaI CYCGRG 1 cut(s) 1116
BaeGI GKGCMC 1 cut(s) 160
BalI TGGCCA 2 cut(s) 134, 903
BamHI GGATCC 1 cut(s) 1450
BauI CACGAG 1 cut(s) 1477
BbsI GAAGAC 1 cut(s) 920
Bbv12I GWGCWC 2 cut(s) 160, 1219
BbvI GCAGC 2 cut(s) 184, 208
BccI CCATC 8 cut(s) 124, 295, 525, 740, 1493, 1535, 1581, 1600
BcgI CGANNNNNNTGC 2 cut(s) 1183, 1217
BciT130I CCWGG 3 cut(s) 136, 1253, 1583
BciVI GTATCC 2 cut(s) 730, 769
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 1161
BcuI ACTAGT 1 cut(s) 668
BfaI CTAG 2 cut(s) 669, 1557
BfmI CTRYAG 2 cut(s) 300, 833
BfuAI ACCTGC 1 cut(s) 1309
BfuI GTATCC 2 cut(s) 730, 769
BisI GCNGC 4 cut(s) 57, 173, 194, 197
BlpI GCTNAGC 1 cut(s) 1430
BlsI GCNGC 4 cut(s) 58, 174, 195, 198
Bme1390I CCNGG 4 cut(s) 7, 136, 1253, 1583
BmeT110I CYCGRG 1 cut(s) 1116
BmiI GGNNCC 2 cut(s) 1346, 1452
BmrFI CCNGG 4 cut(s) 7, 136, 1253, 1583
BmrI ACTGGG 1 cut(s) 1393
BmsI GCATC 6 cut(s) 439, 1130, 1203, 1460, 1482, 1556
BmuI ACTGGG 1 cut(s) 1393
BpiI GAAGAC 1 cut(s) 920
BpmI CTGGAG 1 cut(s) 1433
Bpu10I CCTNAGC 1 cut(s) 867
Bpu1102I GCTNAGC 1 cut(s) 1430
BpuMI CCSGG 1 cut(s) 7
BsaJI CCNNGG 4 cut(s) 11, 135, 1251, 1581
BsaWI WCCGGW 2 cut(s) 772, 884
BsaXI ACNNNNNCTCC 6 cut(s) 576, 606, 879, 909, 1329, 1359
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 884
Bse118I RCCGGY 1 cut(s) 907
Bse1I ACTGG 5 cut(s) 185, 420, 601, 747, 1388
Bse3DI GCAATG 1 cut(s) 1633
BseAI TCCGGA 1 cut(s) 884
BseBI CCWGG 3 cut(s) 136, 1253, 1583
BseDI CCNNGG 4 cut(s) 11, 135, 1251, 1581
BseGI GGATG 6 cut(s) 287, 751, 1036, 1475, 1504, 1546
BseLI CCNNNNNNNGG 2 cut(s) 12, 884
BseMI GCAATG 1 cut(s) 1633
BseMII CTCAG 5 cut(s) 336, 400, 1172, 1537, 1542
BseNI ACTGG 5 cut(s) 185, 420, 601, 747, 1388
BseSI GKGCMC 1 cut(s) 160
BseX3I CGGCCG 1 cut(s) 8
BseXI GCAGC 2 cut(s) 184, 208
BsgI GTGCAG 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 11
BshFI GGCC 8 cut(s) 10, 16, 134, 286, 903, 1233, 1292, 1572
BsiEI CGRYCG 1 cut(s) 11
BsiHKAI GWGCWC 2 cut(s) 160, 1219
BsiHKCI CYCGRG 1 cut(s) 1116
BsiSI CCGG 4 cut(s) 7, 773, 885, 908
BslFI GGGAC 3 cut(s) 647, 1258, 1400
BslI CCNNNNNNNGG 2 cut(s) 12, 884
BsmAI GTCTC 1 cut(s) 1161
BsmFI GGGAC 3 cut(s) 647, 1258, 1400
BsmI GAATGC 3 cut(s) 496, 724, 1048
BsnI GGCC 8 cut(s) 10, 16, 134, 286, 903, 1233, 1292, 1572
BsoBI CYCGRG 1 cut(s) 1116
Bsp1286I GDGCHC 2 cut(s) 160, 1219
Bsp13I TCCGGA 1 cut(s) 884
Bsp143I GATC 6 cut(s) 40, 265, 525, 535, 1294, 1450
Bsp1720I GCTNAGC 1 cut(s) 1430
BspACI CCGC 3 cut(s) 57, 193, 441
BspANI GGCC 8 cut(s) 10, 16, 134, 286, 903, 1233, 1292, 1572
BspCNI CTCAG 5 cut(s) 335, 399, 1171, 1536, 1543
BspEI TCCGGA 1 cut(s) 884
BspLI GGNNCC 2 cut(s) 1346, 1452
BspMI ACCTGC 1 cut(s) 1309
BspPI GGATC 3 cut(s) 260, 1445, 1458
BsrDI GCAATG 1 cut(s) 1633
BsrFI RCCGGY 1 cut(s) 907
BsrI ACTGG 5 cut(s) 185, 420, 601, 747, 1388
BssAI RCCGGY 1 cut(s) 907
BssECI CCNNGG 4 cut(s) 11, 135, 1251, 1581
BssMI GATC 6 cut(s) 40, 265, 525, 535, 1294, 1450
BssSI CACGAG 1 cut(s) 1477
Bst2BI CACGAG 1 cut(s) 1477
Bst2UI CCWGG 3 cut(s) 136, 1253, 1583
Bst4CI ACNGT 4 cut(s) 304, 592, 688, 1283
Bst6I CTCTTC 1 cut(s) 375
BstAPI GCANNNNNTGC 1 cut(s) 449
BstC8I GCNNGC 7 cut(s) 201, 328, 332, 336, 1108, 1327, 1343
BstF5I GGATG 6 cut(s) 287, 751, 1036, 1475, 1504, 1546
BstKTI GATC 6 cut(s) 43, 268, 528, 538, 1297, 1453
BstMAI GTCTC 1 cut(s) 1161
BstMBI GATC 6 cut(s) 40, 265, 525, 535, 1294, 1450
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 3 cut(s) 53, 140, 449
BstNI CCWGG 3 cut(s) 136, 1253, 1583
BstNSI RCATGY 9 cut(s) 334, 447, 570, 854, 949, 1106, 1110, 1148, 1448
BstSCI CCNGG 4 cut(s) 5, 134, 1251, 1581
BstSFI CTRYAG 2 cut(s) 300, 833
BstSLI GKGCMC 1 cut(s) 160
BstV1I GCAGC 2 cut(s) 184, 208
BstV2I GAAGAC 1 cut(s) 920
BstX2I RGATCY 1 cut(s) 1450
BstXI CCANNNNNNTGG 1 cut(s) 118
BstYI RGATCY 1 cut(s) 1450
BstZI CGGCCG 1 cut(s) 8
BsuI GTATCC 2 cut(s) 730, 769
BsuRI GGCC 8 cut(s) 10, 16, 134, 286, 903, 1233, 1292, 1572
BtsCI GGATG 6 cut(s) 287, 751, 1036, 1475, 1504, 1546
BtsIMutI CAGTG 4 cut(s) 394, 538, 588, 740
BveI ACCTGC 1 cut(s) 1309
Cac8I GCNNGC 7 cut(s) 201, 328, 332, 336, 1108, 1327, 1343
Cfr10I RCCGGY 1 cut(s) 907
Csp6I GTAC 1 cut(s) 1013
CspCI CAANNNNNGTGG 1 cut(s) 1615
CviQI GTAC 1 cut(s) 1013
DpnI GATC 6 cut(s) 42, 267, 527, 537, 1296, 1452
DpnII GATC 6 cut(s) 40, 265, 525, 535, 1294, 1450
EaeI YGGCCR 4 cut(s) 8, 132, 901, 1290
EagI CGGCCG 1 cut(s) 8
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
EclXI CGGCCG 1 cut(s) 8
Eco147I AGGCCT 1 cut(s) 1233
Eco52I CGGCCG 1 cut(s) 8
Eco57I CTGAAG 3 cut(s) 356, 514, 1485
Eco88I CYCGRG 1 cut(s) 1116
EcoRII CCWGG 3 cut(s) 134, 1251, 1581
EcoT22I ATGCAT 2 cut(s) 1108, 1475
FaqI GGGAC 3 cut(s) 647, 1258, 1400
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 4 cut(s) 57, 173, 194, 197
FokI GGATG 6 cut(s) 274, 758, 1023, 1482, 1511, 1553
Fsp4HI GCNGC 4 cut(s) 57, 173, 194, 197
FspBI CTAG 2 cut(s) 669, 1557
GluI GCNGC 4 cut(s) 57, 173, 194, 197
GsuI CTGGAG 1 cut(s) 1433
HaeIII GGCC 8 cut(s) 10, 16, 134, 286, 903, 1233, 1292, 1572
HapII CCGG 4 cut(s) 7, 773, 885, 908
HincII GTYRAC 2 cut(s) 313, 1029
HindII GTYRAC 2 cut(s) 313, 1029
HindIII AAGCTT 1 cut(s) 1432
HinfI GANTC 7 cut(s) 276, 320, 416, 461, 585, 1127, 1553
HpaII CCGG 4 cut(s) 7, 773, 885, 908
HphI GGTGA 4 cut(s) 226, 689, 836, 1433
Hpy166II GTNNAC 5 cut(s) 158, 300, 313, 1013, 1029
Hpy188I TCNGA 8 cut(s) 40, 80, 167, 963, 1126, 1137, 1540, 1552
Hpy188III TCNNGA 6 cut(s) 219, 509, 560, 635, 885, 1454
Hpy8I GTNNAC 5 cut(s) 158, 300, 313, 1013, 1029
HpyAV CCTTC 5 cut(s) 221, 911, 1199, 1205, 1460
HpyCH4III ACNGT 4 cut(s) 304, 592, 688, 1283
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 140, 449
Kpn2I TCCGGA 1 cut(s) 884
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 6 cut(s) 40, 265, 525, 535, 1294, 1450
LmnI GCTCC 5 cut(s) 121, 988, 1222, 1350, 1414
Lsp1109I GCAGC 2 cut(s) 184, 208
LweI GCATC 6 cut(s) 439, 1130, 1203, 1460, 1482, 1556
MaeI CTAG 2 cut(s) 669, 1557
MaeIII GTNAC 7 cut(s) 569, 586, 592, 935, 1147, 1180, 1637
MalI GATC 6 cut(s) 42, 267, 527, 537, 1296, 1452
MboI GATC 6 cut(s) 40, 265, 525, 535, 1294, 1450
MboII GAAGA 8 cut(s) 362, 497, 520, 920, 1093, 1364, 1469, 1523
MfeI CAATTG 2 cut(s) 411, 620
MflI RGATCY 1 cut(s) 1450
MhlI GDGCHC 2 cut(s) 160, 1219
MlsI TGGCCA 2 cut(s) 134, 903
MluNI TGGCCA 2 cut(s) 134, 903
MlyI GAGTC 4 cut(s) 314, 594, 1121, 1562
MmeI TCCRAC 2 cut(s) 103, 1348
Mox20I TGGCCA 2 cut(s) 134, 903
Mph1103I ATGCAT 2 cut(s) 1108, 1475
MroI TCCGGA 1 cut(s) 884
MscI TGGCCA 2 cut(s) 134, 903
MseI TTAA 3 cut(s) 99, 189, 486
MslI CAYNNNNRTG 2 cut(s) 849, 1063
Msp20I TGGCCA 2 cut(s) 134, 903
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 4 cut(s) 7, 773, 885, 908
MspR9I CCNGG 4 cut(s) 7, 136, 1253, 1583
MunI CAATTG 2 cut(s) 411, 620
Mva1269I GAATGC 3 cut(s) 496, 724, 1048
MvaI CCWGG 3 cut(s) 136, 1253, 1583
MwoI GCNNNNNNNGC 3 cut(s) 53, 140, 449
NciI CCSGG 1 cut(s) 7
NdeII GATC 6 cut(s) 40, 265, 525, 535, 1294, 1450
NlaIV GGNNCC 2 cut(s) 1346, 1452
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 2 cut(s) 586, 935
NsiI ATGCAT 2 cut(s) 1108, 1475
NspI RCATGY 9 cut(s) 334, 447, 570, 854, 949, 1106, 1110, 1148, 1448
PaeI GCATGC 2 cut(s) 334, 1110
PceI AGGCCT 1 cut(s) 1233
PciI ACATGT 1 cut(s) 1444
PctI GAATGC 3 cut(s) 496, 724, 1048
PfeI GAWTC 3 cut(s) 276, 416, 461
PflFI GACNNNGTC 1 cut(s) 1060
PkrI GCNGC 4 cut(s) 58, 174, 195, 198
PleI GAGTC 4 cut(s) 314, 593, 1121, 1561
PpsI GAGTC 4 cut(s) 314, 593, 1121, 1561
PscI ACATGT 1 cut(s) 1444
Psp6I CCWGG 3 cut(s) 134, 1251, 1581
PspGI CCWGG 3 cut(s) 134, 1251, 1581
PspN4I GGNNCC 2 cut(s) 1346, 1452
PsuI RGATCY 1 cut(s) 1450
PsyI GACNNNGTC 1 cut(s) 1060
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 1 cut(s) 1014
RsaNI GTAC 1 cut(s) 1013
RseI CAYNNNNRTG 2 cut(s) 849, 1063
SaqAI TTAA 3 cut(s) 99, 189, 486
SatI GCNGC 4 cut(s) 57, 173, 194, 197
Sau3AI GATC 6 cut(s) 40, 265, 525, 535, 1294, 1450
SchI GAGTC 4 cut(s) 314, 594, 1121, 1562
ScrFI CCNGG 4 cut(s) 7, 136, 1253, 1583
SduI GDGCHC 2 cut(s) 160, 1219
SfaNI GCATC 6 cut(s) 439, 1130, 1203, 1460, 1482, 1556
SfcI CTRYAG 2 cut(s) 300, 833
SmiMI CAYNNNNRTG 2 cut(s) 849, 1063
SpeI ACTAGT 1 cut(s) 668
SphI GCATGC 2 cut(s) 334, 1110
SseBI AGGCCT 1 cut(s) 1233
SsiI CCGC 3 cut(s) 57, 193, 441
SspMI CTAG 2 cut(s) 669, 1557
StuI AGGCCT 1 cut(s) 1233
StyD4I CCNGG 4 cut(s) 5, 134, 1251, 1581
TaaI ACNGT 4 cut(s) 304, 592, 688, 1283
TaqI TCGA 2 cut(s) 1203, 1598
TauI GCSGC 2 cut(s) 59, 196
TfiI GAWTC 3 cut(s) 276, 416, 461
Tru1I TTAA 3 cut(s) 99, 189, 486
Tru9I TTAA 3 cut(s) 99, 189, 486
TscAI CASTG 4 cut(s) 394, 538, 595, 747
TseFI GTSAC 2 cut(s) 586, 935
TseI GCWGC 2 cut(s) 172, 196
Tsp45I GTSAC 2 cut(s) 586, 935
TspDTI ATGAA 6 cut(s) 42, 240, 246, 640, 1154, 1283
TspGWI ACGGA 1 cut(s) 1069
TspRI CASTG 4 cut(s) 394, 538, 595, 747
Tth111I GACNNNGTC 1 cut(s) 1060
VneI GTGCAC 1 cut(s) 156
XapI RAATTY 3 cut(s) 343, 709, 754
XceI RCATGY 9 cut(s) 334, 447, 570, 854, 949, 1106, 1110, 1148, 1448
XcmI CCANNNNNNNNNTGG 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 299
XspI CTAG 2 cut(s) 669, 1557
Zsp2I ATGCAT 2 cut(s) 1108, 1475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.