Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010295

Physical Location & Seq

Genomic Coordinates Reverse (-)

10914553 .. 10915403

Gene Structure 851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0138300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCCACCTCAGAGATTTTCATCATCATGATCTTCACCTTCTTATTCTTCTCCTTCCTTCCTCGCACAGCAGTCGCCTCCTGTTATCTGACATGTAACCATTCGAGTCTCCAAGATCTTGATATTCGATTCCCTTTCAGCCTGCTAAGTAACCAGTTCCTGAGTTGTGGCTATCCAGGTTTTGATTTCATCTCCTACAACAGTACTGATGAAGCACAAATCATTCTCACTGTCCCATCTTCTAGGGCGTTCAGTGTCGATAGCATCGAGCCATCGACTACAGTGAGAACGCCCTTCAAAACTTCACCTTCCTCAATTTCTCCGCCAATAGTCCAGTGTTGCATGACATTCCACCAGTACGTATCTTGCCTCGGCGATAACGTCAGCTACATGGTCATTGCTGTGCCAACAAGTGAAATGCCGCCGGACGACTACCGAAGCTCTGTGATTTCAACAGCTTTGGCTCCGAGGGATCTTGACTGGGGTGTTCAGTTGGCTTGGGATAAGCCTAACTGTGGTTTTTGTGAGCAATGTTGTGGATCAGATCCTGCCAAAAGTTCCAAGATTCGATTAGGTGCATCCCTTTTTCTACGAAAACCGGTATCTCATTTGAAGCAAAGTATGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016592 GO:0019222 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med17

Protein Analysis

209

Amino Acids

23.11

Weight (kDa)

5.52

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	38 - 94	5.2e-06	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20170
fragaria_vesca	FvH4_5g23630 FvH4_5g23630 FvH4_5g23630 FvH4_5g23630
malus_domestica	MD02G1034800.v1.1 MD15G1175600.v1.1
prunus_persica	Prupe.7G240500_v2.0.a1
pyrus_communis	pycom02g02840 pycom15g15710
rosa_chinensis	RchiOBHm_Chr7g0212931
rosa_laevigata	RLG00000002843
rosa_multiflora	Rmu_co8301145.1_g000001 Rmu_sc0001684.1_g000012
rosa_roxburghii	Rroxscaffold_3G00246410
rosa_rugosa	Rorug07G0138300
rosa_samantha	Rh7AG269500 Rh7BG265000 Rh7CG288700 Rh7DG277600
rosa_wichuraiana	Rw7G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	323, 422
AclWI	GGATC	3 cut(s)	480, 539, 547
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	205, 359
AfiI	CCNNNNNNNGG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	92
AgeI	ACCGGT	1 cut(s)	598
AgsI	TTSAA	3 cut(s)	298, 453, 613
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	3 cut(s)	387, 441, 458
AluI	AGCT	3 cut(s)	387, 441, 458
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	3 cut(s)	480, 539, 547
AlwNI	CAGNNNCTG	2 cut(s)	160, 548
AoxI	GGCC	1 cut(s)	3
AsiGI	ACCGGT	1 cut(s)	598
AsuHPI	GGTGA	2 cut(s)	28, 297
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	2 cut(s)	244, 280
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	243
BfmI	CTRYAG	1 cut(s)	279
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
BmcAI	AGTACT	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	1 cut(s)	177
BmrI	ACTGGG	1 cut(s)	490
BmsI	GCATC	2 cut(s)	273, 587
BmuI	ACTGGG	1 cut(s)	490
BsaAI	YACGTR	1 cut(s)	361
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	370, 467
BsaWI	WCCGGW	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse118I	RCCGGY	1 cut(s)	598
Bse1I	ACTGG	4 cut(s)	154, 334, 355, 485
Bse3DI	GCAATG	2 cut(s)	396, 536
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	370, 467
BseGI	GGATG	1 cut(s)	578
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMI	GCAATG	2 cut(s)	396, 536
BseMII	CTCAG	2 cut(s)	24, 152
BseNI	ACTGG	4 cut(s)	154, 334, 355, 485
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	598
BsiSI	CCGG	2 cut(s)	425, 599
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	5 cut(s)	30, 115, 472, 539, 544
BspACI	CCGC	2 cut(s)	323, 422
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	23, 153
BspHI	TCATGA	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	465
BspPI	GGATC	3 cut(s)	480, 539, 547
BsrDI	GCAATG	2 cut(s)	396, 536
BsrFI	RCCGGY	1 cut(s)	598
BsrI	ACTGG	4 cut(s)	154, 334, 355, 485
BssAI	RCCGGY	1 cut(s)	598
BssECI	CCNNGG	2 cut(s)	370, 467
BssMI	GATC	5 cut(s)	30, 115, 472, 539, 544
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	4 cut(s)	203, 232, 283, 515
BstBAI	YACGTR	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	3 cut(s)	10, 146, 161
BstF5I	GGATG	1 cut(s)	578
BstKTI	GATC	5 cut(s)	33, 118, 475, 542, 547
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	5 cut(s)	30, 115, 472, 539, 544
BstNI	CCWGG	1 cut(s)	177
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	279
BstSNI	TACGTA	1 cut(s)	361
BstX2I	RGATCY	3 cut(s)	115, 472, 544
BstYI	RGATCY	3 cut(s)	115, 472, 544
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	578
BtsIMutI	CAGTG	4 cut(s)	228, 259, 288, 341
Cac8I	GCNNGC	1 cut(s)	143
CaiI	CAGNNNCTG	2 cut(s)	160, 548
CciI	TCATGA	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	204, 358
CspAI	ACCGGT	1 cut(s)	598
CviAII	CATG	4 cut(s)	28, 93, 343, 391
CviQI	GTAC	2 cut(s)	204, 358
DdeI	CTNAG	3 cut(s)	10, 146, 161
DpnI	GATC	5 cut(s)	32, 117, 474, 541, 546
DpnII	GATC	5 cut(s)	30, 115, 472, 539, 544
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	312
Eco105I	TACGTA	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	175
FaeI	CATG	4 cut(s)	31, 96, 346, 394
FaiI	YATR	6 cut(s)	29, 94, 344, 392, 623, 628
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	4 cut(s)	27, 92, 342, 390
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	1 cut(s)	565
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	425, 599
Hin1II	CATG	4 cut(s)	31, 96, 346, 394
HinfI	GANTC	3 cut(s)	106, 129, 565
HpaII	CCGG	2 cut(s)	425, 599
HphI	GGTGA	2 cut(s)	28, 297
Hpy188I	TCNGA	4 cut(s)	13, 90, 468, 544
Hpy188III	TCNNGA	4 cut(s)	28, 119, 160, 476
HpyAV	CCTTC	5 cut(s)	49, 64, 68, 304, 318
HpyCH4III	ACNGT	4 cut(s)	203, 232, 283, 515
HpyCH4IV	ACGT	2 cut(s)	360, 381
HpyCH4V	TGCA	2 cut(s)	342, 578
HpyF3I	CTNAG	3 cut(s)	10, 146, 161
HpySE526I	ACGT	2 cut(s)	360, 381
Hsp92II	CATG	4 cut(s)	31, 96, 346, 394
Kzo9I	GATC	5 cut(s)	30, 115, 472, 539, 544
LmnI	GCTCC	1 cut(s)	469
LweI	GCATC	2 cut(s)	273, 587
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	2 cut(s)	360, 381
MaeIII	GTNAC	2 cut(s)	95, 149
MalI	GATC	5 cut(s)	32, 117, 474, 541, 546
MboI	GATC	5 cut(s)	30, 115, 472, 539, 544
MboII	GAAGA	3 cut(s)	25, 40, 231
MflI	RGATCY	3 cut(s)	115, 472, 544
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	315
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	6 cut(s)	19, 72, 88, 322, 380, 462
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	26, 401
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	425, 599
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
NdeII	GATC	5 cut(s)	30, 115, 472, 539, 544
NlaIII	CATG	4 cut(s)	31, 96, 346, 394
NlaIV	GGNNCC	1 cut(s)	465
NmeAIII	GCCGAG	1 cut(s)	351
NspI	RCATGY	1 cut(s)	96
PagI	TCATGA	1 cut(s)	27
PciI	ACATGT	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 378
PfeI	GAWTC	2 cut(s)	129, 565
PinAI	ACCGGT	1 cut(s)	598
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Ppu21I	YACGTR	1 cut(s)	361
PscI	ACATGT	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	465
PstNI	CAGNNNCTG	2 cut(s)	160, 548
PsuI	RGATCY	3 cut(s)	115, 472, 544
RsaI	GTAC	2 cut(s)	205, 359
RsaNI	GTAC	2 cut(s)	204, 358
RseI	CAYNNNNRTG	2 cut(s)	26, 401
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	5 cut(s)	30, 115, 472, 539, 544
ScaI	AGTACT	1 cut(s)	205
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	177
SfaNI	GCATC	2 cut(s)	273, 587
SfcI	CTRYAG	1 cut(s)	279
SmiMI	CAYNNNNRTG	2 cut(s)	26, 401
SnaBI	TACGTA	1 cut(s)	361
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	2 cut(s)	323, 422
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	175
TaaI	ACNGT	4 cut(s)	203, 232, 283, 515
TaiI	ACGT	2 cut(s)	363, 384
TaqI	TCGA	6 cut(s)	104, 127, 258, 267, 275, 568
TasI	AATT	1 cut(s)	315
TatI	WGTACW	1 cut(s)	203
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	2 cut(s)	129, 565
TscAI	CASTG	4 cut(s)	235, 259, 288, 341
TspDTI	ATGAA	3 cut(s)	10, 178, 225
TspRI	CASTG	4 cut(s)	235, 259, 288, 341
XceI	RCATGY	1 cut(s)	96
XspI	CTAG	1 cut(s)	243
ZrmI	AGTACT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.