Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8301145.1

Orthogroup ID

OG0010295

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 733

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8301145.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ctggatggactgaatttaccagaggataaaccggatacccccaagaaaaagtcagtaattcccaaccaaattagttgtgaaatatatctgctacagatatttcaccagcatgtatttctcaaagctaaggatagacccacttccggaggtggagtatctggccaaccggcaaaagaagggtctggtcttcttggtcacttctgcatgtctttggctcatcggatattttcaaacaaagttctaatggagctggaaaatgtggttagaggtgtaccatatatgcagttgacatctcatcccacttggcattcacggacatcgtcatggacactctttgtgaagatacctcaatctattctacatgcatgccaaacccgagcatcagactcacatcagaggaagcatgttaccaagtctcagtttcatactaaggtggttgttactgatgattgcatcaatgtcgaaggggaaggtgctcctaatgttgtaggcctgttcaaagggacttcccaggaaatctgttcaatgaatagatatgactgtgatttggccgatctttctgtgataattttacagcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016592 GO:0019222 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med17

Protein Analysis

193

Amino Acids

21.46

Weight (kDa)

8.26

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20170
fragaria_vesca	FvH4_5g23630 FvH4_5g23630 FvH4_5g23630 FvH4_5g23630
malus_domestica	MD02G1034800.v1.1 MD15G1175600.v1.1
prunus_persica	Prupe.7G240500_v2.0.a1
pyrus_communis	pycom02g02840 pycom15g15710
rosa_chinensis	RchiOBHm_Chr7g0212931
rosa_laevigata	RLG00000002843
rosa_multiflora	Rmu_co8301145.1_g000001 Rmu_sc0001684.1_g000012
rosa_roxburghii	Rroxscaffold_3G00246410
rosa_rugosa	Rorug07G0138300
rosa_samantha	Rh7AG269500 Rh7BG265000 Rh7CG288700 Rh7DG277600
rosa_wichuraiana	Rw7G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	143
AcoI	YGGCCR	2 cut(s)	160, 549
AcsI	RAATTY	1 cut(s)	13
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	231, 499, 525
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	2 cut(s)	125, 250
AluI	AGCT	2 cut(s)	125, 250
Alw21I	GWGCWC	1 cut(s)	478
Alw26I	GTCTC	1 cut(s)	420
Ama87I	CYCGRG	1 cut(s)	375
Aor13HI	TCCGGA	1 cut(s)	143
AoxI	GGCC	3 cut(s)	160, 490, 549
ApoI	RAATTY	1 cut(s)	13
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AsuHPI	GGTGA	1 cut(s)	95
AvaI	CYCGRG	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	478
BcgI	CGANNNNNNTGC	2 cut(s)	442, 476
BciT130I	CCWGG	1 cut(s)	512
BciVI	GTATCC	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	512
BmeT110I	CYCGRG	1 cut(s)	375
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	2 cut(s)	389, 462
BpiI	GAAGAC	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	510
BsaWI	WCCGGW	2 cut(s)	31, 143
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse118I	RCCGGY	1 cut(s)	166
BseAI	TCCGGA	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	2 cut(s)	10, 295
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	431
BshFI	GGCC	3 cut(s)	162, 492, 551
BsiHKAI	GWGCWC	1 cut(s)	478
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	3 cut(s)	32, 144, 167
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	420
BsmFI	GGGAC	1 cut(s)	517
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	3 cut(s)	162, 492, 551
BsoBI	CYCGRG	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp13I	TCCGGA	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	553
BspANI	GGCC	3 cut(s)	162, 492, 551
BspCNI	CTCAG	1 cut(s)	430
BspEI	TCCGGA	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	166
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	1 cut(s)	553
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	3 cut(s)	126, 417, 429
BstF5I	GGATG	2 cut(s)	10, 295
BstKTI	GATC	1 cut(s)	556
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	1 cut(s)	553
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	5 cut(s)	113, 208, 365, 369, 407
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	179
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	3 cut(s)	162, 492, 551
BtsCI	GGATG	2 cut(s)	10, 295
Cac8I	GCNNGC	1 cut(s)	367
Cfr10I	RCCGGY	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	6 cut(s)	110, 205, 324, 362, 366, 404
CviJI	RGCY	6 cut(s)	125, 162, 215, 250, 492, 551
CviKI_1	RGCY	6 cut(s)	125, 162, 215, 250, 492, 551
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	3 cut(s)	126, 417, 429
DpnI	GATC	1 cut(s)	555
DpnII	GATC	1 cut(s)	553
EaeI	YGGCCR	2 cut(s)	160, 549
Eco147I	AGGCCT	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	510
EcoT22I	ATGCAT	1 cut(s)	367
FaeI	CATG	6 cut(s)	113, 208, 327, 365, 369, 407
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	6 cut(s)	109, 204, 323, 361, 365, 403
FokI	GGATG	2 cut(s)	17, 282
HaeIII	GGCC	3 cut(s)	162, 492, 551
HapII	CCGG	3 cut(s)	32, 144, 167
Hin1II	CATG	6 cut(s)	113, 208, 327, 365, 369, 407
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	3 cut(s)	32, 144, 167
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	272, 288
Hpy188I	TCNGA	3 cut(s)	222, 385, 396
Hpy188III	TCNNGA	1 cut(s)	144
Hpy8I	GTNNAC	2 cut(s)	272, 288
HpyAV	CCTTC	3 cut(s)	170, 458, 464
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4V	TGCA	4 cut(s)	204, 283, 365, 453
HpyF3I	CTNAG	3 cut(s)	126, 417, 429
Hsp92II	CATG	6 cut(s)	113, 208, 327, 365, 369, 407
Kpn2I	TCCGGA	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	553
LmnI	GCTCC	2 cut(s)	247, 481
LweI	GCATC	2 cut(s)	389, 462
MaeIII	GTNAC	3 cut(s)	194, 406, 439
MalI	GATC	1 cut(s)	555
MboI	GATC	1 cut(s)	553
MboII	GAAGA	2 cut(s)	179, 352
MhlI	GDGCHC	1 cut(s)	478
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	4 cut(s)	13, 57, 69, 567
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	5 cut(s)	16, 140, 260, 357, 390
Mox20I	TGGCCA	1 cut(s)	162
Mph1103I	ATGCAT	1 cut(s)	367
MroI	TCCGGA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	162
MslI	CAYNNNNRTG	2 cut(s)	108, 322
Msp20I	TGGCCA	1 cut(s)	162
MspI	CCGG	3 cut(s)	32, 144, 167
MspR9I	CCNGG	1 cut(s)	512
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	512
NdeII	GATC	1 cut(s)	553
NlaIII	CATG	6 cut(s)	113, 208, 327, 365, 369, 407
NmuCI	GTSAC	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	5 cut(s)	113, 208, 365, 369, 407
PaeI	GCATGC	1 cut(s)	369
PceI	AGGCCT	1 cut(s)	492
PctI	GAATGC	1 cut(s)	307
PflFI	GACNNNGTC	1 cut(s)	319
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PsyI	GACNNNGTC	1 cut(s)	319
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	2 cut(s)	108, 322
Sau3AI	GATC	1 cut(s)	553
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	478
SetI	ASST	7 cut(s)	127, 151, 252, 271, 349, 435, 475
SfaNI	GCATC	2 cut(s)	389, 462
SfcI	CTRYAG	1 cut(s)	92
SmiMI	CAYNNNNRTG	2 cut(s)	108, 322
SphI	GCATGC	1 cut(s)	369
Sse9I	AATT	4 cut(s)	13, 57, 69, 567
SseBI	AGGCCT	1 cut(s)	492
StuI	AGGCCT	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	510
TaaI	ACNGT	1 cut(s)	542
TaqI	TCGA	1 cut(s)	462
TasI	AATT	4 cut(s)	13, 57, 69, 567
TseFI	GTSAC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	413, 542
TspGWI	ACGGA	1 cut(s)	328
Tth111I	GACNNNGTC	1 cut(s)	319
XapI	RAATTY	1 cut(s)	13
XceI	RCATGY	5 cut(s)	113, 208, 365, 369, 407
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.