isoform X1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G19390 AT2G19390 AT4G29790 |
| fragaria_vesca | FvH4_1g08000 |
| malus_domestica | MD02G1084500.v1.1 MD15G1211900.v1.1 |
| prunus_persica | Prupe.7G204900_v2.0.a1 Prupe.7G204900_v2.0.a1 Prupe.7G204900_v2.0.a1 Prupe.7G204900_v2.0.a1 Prupe.7G204900_v2.0.a1 Prupe.7G204900_v2.0.a1 Prupe.7G204900_v2.0.a1 Prupe.7G204900_v2.0.a1 Prupe.7G204900_v2.0.a1 Prupe.7G204900_v2.0.a1 Prupe.7G204900_v2.0.a1 Prupe.7G204900_v2.0.a1 Prupe.7G204900_v2.0.a1 |
| pyrus_communis | pycom02g06750 pycom15g18830 |
| rosa_chinensis | RchiOBHm_Chr2g0094041 |
| rosa_laevigata | RLG00000016448 |
| rosa_multiflora | Rmu_ssc0000469.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00147530 |
| rosa_rugosa | Rorug02G0040600 |
| rosa_samantha | Rh2AG088000 Rh2BG088200 Rh2CG090500 Rh2DG087200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3780 |
| Acc36I | ACCTGC | 2 cut(s) | 1639, 3780 |
| AccB1I | GGYRCC | 1 cut(s) | 1330 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 965, 2342, 3539 |
| AccI | GTMKAC | 1 cut(s) | 2915 |
| AccII | CGCG | 3 cut(s) | 174, 1881, 3175 |
| AciI | CCGC | 9 cut(s) | 231, 763, 781, 1881, 2006, 2693, 3085, 3269, 3551 |
| AclI | AACGTT | 1 cut(s) | 577 |
| AcoI | YGGCCR | 5 cut(s) | 782, 1486, 3054, 3545, 3820 |
| AcsI | RAATTY | 7 cut(s) | 859, 1528, 2720, 2781, 2933, 3107, 3897 |
| AcuI | CTGAAG | 3 cut(s) | 369, 2246, 3276 |
| AfaI | GTAC | 7 cut(s) | 534, 733, 769, 1198, 1396, 1513, 2286 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 626, 965, 1316, 1570, 2342, 2944, 3150, 3539 |
| AflIII | ACRYGT | 4 cut(s) | 213, 478, 2042, 2736 |
| AjiI | CACGTC | 2 cut(s) | 2045, 3351 |
| AjnI | CCWGG | 7 cut(s) | 470, 612, 1054, 2701, 2760, 3212, 3781 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 184, 216, 2204, 2236, 2325, 2357 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1764, 1796, 1839, 1871 |
| Alw21I | GWGCWC | 3 cut(s) | 306, 2297, 3041 |
| Alw26I | GTCTC | 6 cut(s) | 661, 1486, 2011, 2404, 3341, 3771 |
| ApoI | RAATTY | 7 cut(s) | 859, 1528, 2720, 2781, 2933, 3107, 3897 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2453, 2485 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1639 |
| AspLEI | GCGC | 1 cut(s) | 1881 |
| AspS9I | GGNCC | 3 cut(s) | 617, 3014, 3803 |
| AsuC2I | CCSGG | 1 cut(s) | 916 |
| AsuHPI | GGTGA | 6 cut(s) | 354, 1610, 2357, 2707, 3277, 3761 |
| AvaII | GGWCC | 1 cut(s) | 3014 |
| BaeGI | GKGCMC | 2 cut(s) | 2965, 3501 |
| BalI | TGGCCA | 3 cut(s) | 1488, 3056, 3822 |
| BamHI | GGATCC | 2 cut(s) | 131, 3751 |
| BanI | GGYRCC | 1 cut(s) | 1330 |
| BanII | GRGCYC | 3 cut(s) | 1309, 1903, 3041 |
| BbsI | GAAGAC | 3 cut(s) | 1668, 1845, 2466 |
| Bbv12I | GWGCWC | 3 cut(s) | 306, 2297, 3041 |
| BceAI | ACGGC | 1 cut(s) | 1400 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 244, 278, 2483, 2517 |
| BciT130I | CCWGG | 7 cut(s) | 472, 614, 1056, 2703, 2762, 3214, 3783 |
| BciVI | GTATCC | 1 cut(s) | 958 |
| BcnI | CCSGG | 1 cut(s) | 916 |
| BcoDI | GTCTC | 6 cut(s) | 661, 1486, 2011, 2404, 3341, 3771 |
| BfaI | CTAG | 8 cut(s) | 68, 582, 1266, 2013, 2280, 2445, 2795, 3519 |
| BfmI | CTRYAG | 1 cut(s) | 297 |
| BfuAI | ACCTGC | 2 cut(s) | 1639, 3780 |
| BfuI | GTATCC | 1 cut(s) | 958 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3636 |
| BglII | AGATCT | 3 cut(s) | 158, 1503, 2874 |
| BmcAI | AGTACT | 1 cut(s) | 769 |
| Bme1390I | CCNGG | 8 cut(s) | 472, 614, 916, 1056, 2703, 2762, 3214, 3783 |
| Bme18I | GGWCC | 1 cut(s) | 3014 |
| BmgBI | CACGTC | 2 cut(s) | 2045, 3351 |
| BmgT120I | GGNCC | 3 cut(s) | 617, 3014, 3803 |
| BmiI | GGNNCC | 9 cut(s) | 133, 618, 1308, 1332, 1561, 2184, 3015, 3235, 3753 |
| BmrFI | CCNGG | 8 cut(s) | 472, 614, 916, 1056, 2703, 2762, 3214, 3783 |
| BmrI | ACTGGG | 3 cut(s) | 1340, 1842, 2598 |
| BmsI | GCATC | 9 cut(s) | 42, 579, 736, 919, 2197, 2491, 2637, 2688, 3434 |
| BmuI | ACTGGG | 3 cut(s) | 1340, 1842, 2598 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2658 |
| BpiI | GAAGAC | 3 cut(s) | 1668, 1845, 2466 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 334, 366, 757, 789 |
| BpmI | CTGGAG | 4 cut(s) | 2400, 2783, 3025, 3196 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1321, 3070, 3594 |
| BpuEI | CTTGAG | 3 cut(s) | 695, 1261, 2253 |
| BpuMI | CCSGG | 1 cut(s) | 916 |
| Bsa29I | ATCGAT | 1 cut(s) | 3855 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1459, 2493 |
| BsaI | GGTCTC | 1 cut(s) | 1486 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1839, 1869 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 626, 965, 1316, 1570, 2342, 2944, 3150, 3539 |
| Bse118I | RCCGGY | 2 cut(s) | 89, 3661 |
| Bse3DI | GCAATG | 2 cut(s) | 62, 3665 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1459, 2493 |
| BseBI | CCWGG | 7 cut(s) | 472, 614, 1056, 2703, 2762, 3214, 3783 |
| BseCI | ATCGAT | 1 cut(s) | 3855 |
| BseJI | GATNNNNATC | 2 cut(s) | 1459, 2493 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 626, 965, 1316, 1570, 2342, 2944, 3150, 3539 |
| BseMI | GCAATG | 2 cut(s) | 62, 3665 |
| BseMII | CTCAG | 5 cut(s) | 672, 1335, 1658, 1707, 3930 |
| BseRI | GAGGAG | 3 cut(s) | 1715, 2450, 3484 |
| BseSI | GKGCMC | 2 cut(s) | 2965, 3501 |
| BseYI | CCCAGC | 5 cut(s) | 882, 1609, 2555, 2689, 3237 |
| BsgI | GTGCAG | 2 cut(s) | 858, 1668 |
| Bsh1236I | CGCG | 3 cut(s) | 174, 1881, 3175 |
| Bsh1285I | CGRYCG | 2 cut(s) | 604, 2006 |
| BshNI | GGYRCC | 1 cut(s) | 1330 |
| BshVI | ATCGAT | 1 cut(s) | 3855 |
| BsiEI | CGRYCG | 2 cut(s) | 604, 2006 |
| BsiHKAI | GWGCWC | 3 cut(s) | 306, 2297, 3041 |
| BsiSI | CCGG | 3 cut(s) | 90, 915, 3662 |
| BslFI | GGGAC | 2 cut(s) | 338, 1327 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 626, 965, 1316, 1570, 2342, 2944, 3150, 3539 |
| BsmAI | GTCTC | 6 cut(s) | 661, 1486, 2011, 2404, 3341, 3771 |
| BsmBI | CGTCTC | 1 cut(s) | 3341 |
| BsmFI | GGGAC | 2 cut(s) | 338, 1327 |
| BsmI | GAATGC | 4 cut(s) | 509, 996, 3010, 3271 |
| Bso31I | GGTCTC | 1 cut(s) | 1486 |
| Bsp1286I | GDGCHC | 7 cut(s) | 306, 1309, 1903, 2297, 2965, 3041, 3501 |
| Bsp1407I | TGTACA | 1 cut(s) | 2284 |
| Bsp19I | CCATGG | 2 cut(s) | 1042, 3228 |
| Bsp68I | TCGCGA | 1 cut(s) | 174 |
| BspACI | CCGC | 9 cut(s) | 231, 763, 781, 1881, 2006, 2693, 3085, 3269, 3551 |
| BspCNI | CTCAG | 5 cut(s) | 671, 1334, 1657, 1708, 3929 |
| BspDI | ATCGAT | 1 cut(s) | 3855 |
| BspFNI | CGCG | 3 cut(s) | 174, 1881, 3175 |
| BspHI | TCATGA | 1 cut(s) | 3877 |
| BspLI | GGNNCC | 9 cut(s) | 133, 618, 1308, 1332, 1561, 2184, 3015, 3235, 3753 |
| BspMAI | CTGCAG | 1 cut(s) | 301 |
| BspMI | ACCTGC | 2 cut(s) | 1639, 3780 |
| BspQI | GCTCTTC | 2 cut(s) | 2103, 3029 |
| BspT107I | GGYRCC | 1 cut(s) | 1330 |
| BspTNI | GGTCTC | 1 cut(s) | 1486 |
| BsrDI | GCAATG | 2 cut(s) | 62, 3665 |
| BsrFI | RCCGGY | 2 cut(s) | 89, 3661 |
| BsrGI | TGTACA | 1 cut(s) | 2284 |
| BssAI | RCCGGY | 2 cut(s) | 89, 3661 |
| BssT1I | CCWWGG | 6 cut(s) | 1042, 1843, 2336, 3228, 3714, 3823 |
| Bst2UI | CCWGG | 7 cut(s) | 472, 614, 1056, 2703, 2762, 3214, 3783 |
| Bst4CI | ACNGT | 5 cut(s) | 974, 1918, 2302, 2867, 3255 |
| Bst6I | CTCTTC | 6 cut(s) | 539, 2103, 3029, 3295, 3339, 3365 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2066 |
| BstAUI | TGTACA | 1 cut(s) | 2284 |
| BstC8I | GCNNGC | 9 cut(s) | 825, 1486, 1999, 2894, 2961, 3063, 3173, 3549, 3641 |
| BstDSI | CCRYGG | 3 cut(s) | 1042, 3228, 3735 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3148 |
| BstFNI | CGCG | 3 cut(s) | 174, 1881, 3175 |
| BstHHI | GCGC | 1 cut(s) | 1881 |
| BstMAI | GTCTC | 2 cut(s) | 661, 1486 |
| BstMCI | CGRYCG | 2 cut(s) | 604, 2006 |
| BstNI | CCWGG | 7 cut(s) | 472, 614, 1056, 2703, 2762, 3214, 3783 |
| BstNSI | RCATGY | 2 cut(s) | 217, 2740 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2658 |
| BstSCI | CCNGG | 8 cut(s) | 470, 612, 914, 1054, 2701, 2760, 3212, 3781 |
| BstSFI | CTRYAG | 1 cut(s) | 297 |
| BstSLI | GKGCMC | 2 cut(s) | 2965, 3501 |
| BstUI | CGCG | 3 cut(s) | 174, 1881, 3175 |
| BstV2I | GAAGAC | 3 cut(s) | 1668, 1845, 2466 |
| BstX2I | RGATCY | 5 cut(s) | 131, 158, 1503, 2874, 3751 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2524 |
| BstYI | RGATCY | 5 cut(s) | 131, 158, 1503, 2874, 3751 |
| Bsu15I | ATCGAT | 1 cut(s) | 3855 |
| BsuI | GTATCC | 1 cut(s) | 958 |
| BsuTUI | ATCGAT | 1 cut(s) | 3855 |
| BtgI | CCRYGG | 3 cut(s) | 1042, 3228, 3735 |
| BtrI | CACGTC | 2 cut(s) | 2045, 3351 |
| BtsI | GCAGTG | 3 cut(s) | 272, 2455, 3460 |
| BtsIMutI | CAGTG | 9 cut(s) | 124, 272, 877, 1170, 2455, 3142, 3383, 3460, 3627 |
| BtuMI | TCGCGA | 1 cut(s) | 174 |
| BveI | ACCTGC | 2 cut(s) | 1639, 3780 |
| Cac8I | GCNNGC | 9 cut(s) | 825, 1486, 1999, 2894, 2961, 3063, 3173, 3549, 3641 |
| CciI | TCATGA | 1 cut(s) | 3877 |
| CfoI | GCGC | 1 cut(s) | 1881 |
| Cfr10I | RCCGGY | 2 cut(s) | 89, 3661 |
| Cfr13I | GGNCC | 3 cut(s) | 617, 3014, 3803 |
| ClaI | ATCGAT | 1 cut(s) | 3855 |
| Csp6I | GTAC | 7 cut(s) | 533, 732, 768, 1197, 1395, 1512, 2285 |
| CviQI | GTAC | 7 cut(s) | 533, 732, 768, 1197, 1395, 1512, 2285 |
| DraI | TTTAAA | 2 cut(s) | 3112, 3312 |
| EaeI | YGGCCR | 5 cut(s) | 782, 1486, 3054, 3545, 3820 |
| Eam1104I | CTCTTC | 6 cut(s) | 539, 2103, 3029, 3295, 3339, 3365 |
| EarI | CTCTTC | 6 cut(s) | 539, 2103, 3029, 3295, 3339, 3365 |
| Ecl136II | GAGCTC | 1 cut(s) | 3039 |
| Eco130I | CCWWGG | 6 cut(s) | 1042, 1843, 2336, 3228, 3714, 3823 |
| Eco147I | AGGCCT | 2 cut(s) | 1003, 2036 |
| Eco24I | GRGCYC | 3 cut(s) | 1309, 1903, 3041 |
| Eco31I | GGTCTC | 1 cut(s) | 1486 |
| Eco47I | GGWCC | 1 cut(s) | 3014 |
| Eco53kI | GAGCTC | 1 cut(s) | 3039 |
| Eco57I | CTGAAG | 3 cut(s) | 369, 2246, 3276 |
| EcoICRI | GAGCTC | 1 cut(s) | 3039 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3148 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3014 |
| EcoRI | GAATTC | 1 cut(s) | 2933 |
| EcoRII | CCWGG | 7 cut(s) | 470, 612, 1054, 2701, 2760, 3212, 3781 |
| EcoT14I | CCWWGG | 6 cut(s) | 1042, 1843, 2336, 3228, 3714, 3823 |
| EcoT38I | GRGCYC | 3 cut(s) | 1309, 1903, 3041 |
| ErhI | CCWWGG | 6 cut(s) | 1042, 1843, 2336, 3228, 3714, 3823 |
| Esp3I | CGTCTC | 1 cut(s) | 3341 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2876, 2908 |
| FaqI | GGGAC | 2 cut(s) | 338, 1327 |
| FblI | GTMKAC | 1 cut(s) | 2915 |
| FriOI | GRGCYC | 3 cut(s) | 1309, 1903, 3041 |
| FspBI | CTAG | 8 cut(s) | 68, 582, 1266, 2013, 2280, 2445, 2795, 3519 |
| GlaI | GCGC | 1 cut(s) | 1880 |
| GsaI | CCCAGC | 5 cut(s) | 886, 1613, 2559, 2693, 3241 |
| GsuI | CTGGAG | 4 cut(s) | 2400, 2783, 3025, 3196 |
| HapII | CCGG | 3 cut(s) | 90, 915, 3662 |
| HhaI | GCGC | 1 cut(s) | 1881 |
| Hin6I | GCGC | 1 cut(s) | 1879 |
| HinP1I | GCGC | 1 cut(s) | 1879 |
| HpaII | CCGG | 3 cut(s) | 90, 915, 3662 |
| HphI | GGTGA | 6 cut(s) | 354, 1610, 2357, 2707, 3277, 3761 |
| Hpy166II | GTNNAC | 8 cut(s) | 272, 799, 1794, 2285, 2333, 2870, 2916, 3140 |
| Hpy8I | GTNNAC | 8 cut(s) | 272, 799, 1794, 2285, 2333, 2870, 2916, 3140 |
| Hpy99I | CGWCG | 1 cut(s) | 2243 |
| HpyAV | CCTTC | 6 cut(s) | 1918, 2164, 2286, 2609, 2819, 3681 |
| HpyCH4III | ACNGT | 5 cut(s) | 974, 1918, 2302, 2867, 3255 |
| HpyCH4IV | ACGT | 6 cut(s) | 478, 577, 2044, 2241, 3350, 3393 |
| HpySE526I | ACGT | 6 cut(s) | 478, 577, 2044, 2241, 3350, 3393 |
| HspAI | GCGC | 1 cut(s) | 1879 |
| LguI | GCTCTTC | 2 cut(s) | 2103, 3029 |
| LmnI | GCTCC | 7 cut(s) | 1312, 1421, 1709, 2182, 2292, 2947, 3044 |
| LweI | GCATC | 9 cut(s) | 42, 579, 736, 919, 2197, 2491, 2637, 2688, 3434 |
| MaeI | CTAG | 8 cut(s) | 68, 582, 1266, 2013, 2280, 2445, 2795, 3519 |
| MaeII | ACGT | 6 cut(s) | 478, 577, 2044, 2241, 3350, 3393 |
| MfeI | CAATTG | 3 cut(s) | 149, 960, 3417 |
| MflI | RGATCY | 5 cut(s) | 131, 158, 1503, 2874, 3751 |
| MhlI | GDGCHC | 7 cut(s) | 306, 1309, 1903, 2297, 2965, 3041, 3501 |
| MlsI | TGGCCA | 3 cut(s) | 1488, 3056, 3822 |
| MluNI | TGGCCA | 3 cut(s) | 1488, 3056, 3822 |
| MlyI | GAGTC | 5 cut(s) | 1031, 1068, 1089, 1712, 2406 |
| MmeI | TCCRAC | 9 cut(s) | 1057, 1063, 1399, 1750, 1909, 1918, 2184, 2758, 2959 |
| Mox20I | TGGCCA | 3 cut(s) | 1488, 3056, 3822 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1639 |
| MscI | TGGCCA | 3 cut(s) | 1488, 3056, 3822 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1286, 1910 |
| Msp20I | TGGCCA | 3 cut(s) | 1488, 3056, 3822 |
| MspA1I | CMGCKG | 2 cut(s) | 2693, 3551 |
| MspI | CCGG | 3 cut(s) | 90, 915, 3662 |
| MspR9I | CCNGG | 8 cut(s) | 472, 614, 916, 1056, 2703, 2762, 3214, 3783 |
| MunI | CAATTG | 3 cut(s) | 149, 960, 3417 |
| Mva1269I | GAATGC | 4 cut(s) | 509, 996, 3010, 3271 |
| MvaI | CCWGG | 7 cut(s) | 472, 614, 1056, 2703, 2762, 3214, 3783 |
| MvnI | CGCG | 3 cut(s) | 174, 1881, 3175 |
| NciI | CCSGG | 1 cut(s) | 916 |
| NcoI | CCATGG | 2 cut(s) | 1042, 3228 |
| NlaIV | GGNNCC | 9 cut(s) | 133, 618, 1308, 1332, 1561, 2184, 3015, 3235, 3753 |
| NmeAIII | GCCGAG | 1 cut(s) | 843 |
| NmuCI | GTSAC | 7 cut(s) | 26, 1060, 1598, 2254, 2345, 2660, 3283 |
| NruI | TCGCGA | 1 cut(s) | 174 |
| NspI | RCATGY | 2 cut(s) | 217, 2740 |
| PagI | TCATGA | 1 cut(s) | 3877 |
| PaqCI | CACCTGC | 1 cut(s) | 3780 |
| PceI | AGGCCT | 2 cut(s) | 1003, 2036 |
| PciI | ACATGT | 2 cut(s) | 213, 2736 |
| PciSI | GCTCTTC | 2 cut(s) | 2103, 3029 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 593, 1309 |
| PctI | GAATGC | 4 cut(s) | 509, 996, 3010, 3271 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1639 |
| PfeI | GAWTC | 7 cut(s) | 371, 646, 1098, 2246, 2441, 2474, 2513 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 965, 2342, 3539 |
| PfoI | TCCNGGA | 2 cut(s) | 914, 2760 |
| Ple19I | CGATCG | 1 cut(s) | 604 |
| PleI | GAGTC | 5 cut(s) | 1031, 1067, 1088, 1711, 2406 |
| PpsI | GAGTC | 5 cut(s) | 1031, 1067, 1088, 1711, 2406 |
| PpuMI | RGGWCCY | 1 cut(s) | 3014 |
| PscI | ACATGT | 2 cut(s) | 213, 2736 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2658 |
| Psp124BI | GAGCTC | 1 cut(s) | 3041 |
| Psp1406I | AACGTT | 1 cut(s) | 577 |
| Psp5II | RGGWCCY | 1 cut(s) | 3014 |
| Psp6I | CCWGG | 7 cut(s) | 470, 612, 1054, 2701, 2760, 3212, 3781 |
| PspFI | CCCAGC | 5 cut(s) | 882, 1609, 2555, 2689, 3237 |
| PspGI | CCWGG | 7 cut(s) | 470, 612, 1054, 2701, 2760, 3212, 3781 |
| PspN4I | GGNNCC | 9 cut(s) | 133, 618, 1308, 1332, 1561, 2184, 3015, 3235, 3753 |
| PspPI | GGNCC | 3 cut(s) | 617, 3014, 3803 |
| PspPPI | RGGWCCY | 1 cut(s) | 3014 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3424, 3456 |
| PstI | CTGCAG | 1 cut(s) | 301 |
| PsuI | RGATCY | 5 cut(s) | 131, 158, 1503, 2874, 3751 |
| PvuI | CGATCG | 1 cut(s) | 604 |
| RruI | TCGCGA | 1 cut(s) | 174 |
| RsaI | GTAC | 7 cut(s) | 534, 733, 769, 1198, 1396, 1513, 2286 |
| RsaNI | GTAC | 7 cut(s) | 533, 732, 768, 1197, 1395, 1512, 2285 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1286, 1910 |
| SacI | GAGCTC | 1 cut(s) | 3041 |
| SapI | GCTCTTC | 2 cut(s) | 2103, 3029 |
| Sau96I | GGNCC | 3 cut(s) | 617, 3014, 3803 |
| ScaI | AGTACT | 1 cut(s) | 769 |
| SchI | GAGTC | 5 cut(s) | 1031, 1068, 1089, 1712, 2406 |
| ScrFI | CCNGG | 8 cut(s) | 472, 614, 916, 1056, 2703, 2762, 3214, 3783 |
| SduI | GDGCHC | 7 cut(s) | 306, 1309, 1903, 2297, 2965, 3041, 3501 |
| SfaNI | GCATC | 9 cut(s) | 42, 579, 736, 919, 2197, 2491, 2637, 2688, 3434 |
| SfcI | CTRYAG | 1 cut(s) | 297 |
| SinI | GGWCC | 1 cut(s) | 3014 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1286, 1910 |
| SmlI | CTYRAG | 3 cut(s) | 674, 1276, 2268 |
| SmoI | CTYRAG | 3 cut(s) | 674, 1276, 2268 |
| SseBI | AGGCCT | 2 cut(s) | 1003, 2036 |
| SsiI | CCGC | 9 cut(s) | 231, 763, 781, 1881, 2006, 2693, 3085, 3269, 3551 |
| SspI | AATATT | 1 cut(s) | 3406 |
| SspMI | CTAG | 8 cut(s) | 68, 582, 1266, 2013, 2280, 2445, 2795, 3519 |
| SstI | GAGCTC | 1 cut(s) | 3041 |
| StuI | AGGCCT | 2 cut(s) | 1003, 2036 |
| StyD4I | CCNGG | 8 cut(s) | 470, 612, 914, 1054, 2701, 2760, 3212, 3781 |
| StyI | CCWWGG | 6 cut(s) | 1042, 1843, 2336, 3228, 3714, 3823 |
| TaaI | ACNGT | 5 cut(s) | 974, 1918, 2302, 2867, 3255 |
| TaiI | ACGT | 6 cut(s) | 481, 580, 2047, 2244, 3353, 3396 |
| TaqI | TCGA | 9 cut(s) | 418, 587, 596, 856, 1357, 1920, 2029, 2493, 3855 |
| TaqII | GACCGA | 1 cut(s) | 594 |
| TatI | WGTACW | 2 cut(s) | 767, 2284 |
| TauI | GCSGC | 1 cut(s) | 784 |
| TfiI | GAWTC | 7 cut(s) | 371, 646, 1098, 2246, 2441, 2474, 2513 |
| TscAI | CASTG | 9 cut(s) | 124, 272, 877, 1177, 2455, 3142, 3390, 3460, 3627 |
| TseFI | GTSAC | 7 cut(s) | 26, 1060, 1598, 2254, 2345, 2660, 3283 |
| Tsp45I | GTSAC | 7 cut(s) | 26, 1060, 1598, 2254, 2345, 2660, 3283 |
| TspGWI | ACGGA | 6 cut(s) | 1110, 1214, 1235, 2496, 2831, 3752 |
| TspRI | CASTG | 9 cut(s) | 124, 272, 877, 1177, 2455, 3142, 3390, 3460, 3627 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 965, 2342, 3539 |
| VpaK11BI | GGWCC | 1 cut(s) | 3014 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3148 |
| XapI | RAATTY | 7 cut(s) | 859, 1528, 2720, 2781, 2933, 3107, 3897 |
| XbaI | TCTAGA | 1 cut(s) | 3518 |
| XceI | RCATGY | 2 cut(s) | 217, 2740 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 3049, 3742 |
| XmiI | GTMKAC | 1 cut(s) | 2915 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1639 |
| XspI | CTAG | 8 cut(s) | 68, 582, 1266, 2013, 2280, 2445, 2795, 3519 |
| ZrmI | AGTACT | 1 cut(s) | 769 |