Rroxscaffold_2G00147530

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005061
Physical Location & Seq
Reverse (-)
85324064 .. 85335495
11432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00147530.1

Sequence Viewer

Length: 3831 bp
ATGGCAACTTCTAGCAAGTTTGATCTCTCTTCTGGTAGCCCAGATAGACCATTATACACCAGTGGGCAGCGTGGGTCCCACATGGCTGCTTCACTGGAAAGACCTGGTAGCTTTCGCGAGAGCATGGAAAATCCAATTTTGTCTTCACTTCCAAACATGTCAAGAAGCACTTCTGCAATAGCCCAAGGAGATGTGACAAACTTCCTCCAATGCTTGCGCTTCGACCCAAAACAGGTGGCCGCAGAGCACAAGTCTAACCGACAAGGGGACTTGAAAAGACTTATGAATGTTGCTCTTAGCATTTCACCTGATGAATCTCCGTCTAGTTCTGTGAAAGGTAAGTTGCTACCAGCCCCACTACCGGAGGATGTAAAACGAGTGAAGGCTGGTCTCCGTGAAAGCATTGTTAAAGCCAGGGAACGCATAAAGATTTTCACTGAAGCATTATCTGTATTCAACAAGGTTTTTCCTAGTGTACCATCAAAGAAGAGATCAAGAACTGAAAGTTTTTCTAATGAACGGTCTGGTGTGGTGTTACCAACTGATCGGTCAATGATGGGGCCAAGCATGGGTAAGATTGGTATGCAGAGTCATGCTGTGGCAGGTGGTTTTGAACTTGAGCAGCAAAAGTCTGAAGAAAGGACAAAAAATTCTGTCCCGAACAAACGCACTCGTACTTCTTTGGTGGATGTGAGGATGGATGTGCGAAGTAATACTCTTGTACGACCATCGGGGGCTGTAGAAAGAGAAAGGGAAATGATGAGGCTTGCAAGTAGTGGTGCGGTTCAGGGAGAGGAACGTAATCTATCTATCAGTGTGGATGGTTGGGAAAAATCAAAAATGAAGAAAAAGCGTTCTGGGATAAAGCCAGATGTTTCTCCAATGGTGACCAGTAAACCAATTGATGGCTACCGTGAAACTAAACAGGGGATGCAGCAAAGGCCTGTTAATGATGTCCGTTCAAGGTTGAATAATGACTCCCATGGGTTCAGGCCTGGAGTCACTAATGGAGCGGTTGGAGTTGGAAAGTCGGACGGAATCACACAACCAACTGGCCCAGCCTTCCGTTCATCCATCCCTAAGACTGAACCAGACAACCCTTCCCTTATCAACGATAAGAGAGATCGTCCTATTGGTTCAGATAAGGAAAGGGTGAACCAGAGAGCTGTTAATAAATCAAATGCTCGTGATGATTTTAATTCTGCTAGTCCCACCTCTAGTACAAAGATGAATGCATCTGTTCGGGCTCCGCGATCAGGCTCAGCTGTTGCACCCAAGTTGTCCCCAGTTGTTCATCGAGCAACTGTTCCTAATGATTGGGAGATATCTCAATGTACAAACAAGCCACCGGCTGTTGTTGGAGCTAACAATCGCAAACGCATGACATCAGCACGATCTTCATCCCCACCTGTTGCTCAATGGGCTGGCCAGAGACCACAGAAGATGTCCCGCACTGCTAGACGATCAAATTTCAATCCAATTGTTTCAGGTAATGAGGAAAACCCTGCTATTGATAGTGCATCGGACGTCACTGGTAGTGACATCGGGCAAGGATTCGCCAGACGCTTACCCGGAAGTTCTCCTCAGCAAGTTAAGTTAAAAAGTGAACCTTTGTCTTCAGCTGCACTATCAGAGAGTGAGGAGTCAGGAGTTGCTGAGGTCAAATCCAGAGACAAAGGCAAAAAATCCGATGAGATAGATGAGAAACCTGGACAGAATATTCAAATTCAAAAGGTGCCTAGTCTGGTCTTGCCATCAAGAAAACATAAGTCGGCTCCCGGGGAAGACCTTGGAGATGGTGTTCGGAGGCAGGGGAGAACAGGACGAGGTTTTGCTTCAACAAGGTCTCTTGTCCCAATGTCTGTTGAGAAGATGGGAAATGTTGGTACTGCTAAACAGCTGAGAAGTTCCAGACTTGGTGTAGATAAGAGTGAAAGCAAGGCAGGCCGTCCACCAACTAGGAGACTTTCTGATCGAAAGGCTTATACACGTCAAAAGCATACAGCAATTAATACAGCAGCAGATTTTCTTGTTGGGTCAGATGATGGACATGAAGAGCTAATGACTGCTGCAAAAGCTGGAAACATCGAAGCCAGTGTGACGACTCCGGCCGAAGTCCCGTGTAGTTTAGATGGTAACCTTACTGGCCATTATGGACTTGGGTCGAGTGAATTTGAACCAAAGAGTGGAGAGTTCCATTCCGAACAATTAATGCCAGGCACTGGGGATCATTCTGAAATTCCTCTGTGTCAGAGACTCATAGCAGCATTAATTTCAGAAGAGGATTCTATTAGTGGAAATGAAGATCCTGTGTTTGATGCCTATGGAGTTGAATCTGATCTGGATGCAGAGGTAGAATCAAATGGTCTGAATTATCAATCTCAAGTTAACTTTCAGTTTGCTGGGAATTCTGCTTCAAATGGTTATAGGATTACTGGGAGGCCGGAACATGATGAGCTTGAAGGTGGAATCCACATCCCAAACAGAACAATTAGTTCAAACTTTGGTCATTCGCAAAATGGTTTACTTCCGGATCAAGCATTTTTTTCTGGTTTCGCCTGTTCAGAATTCCAGTATGGTAACATGCACATAAATGAAAAACTTCTACTGGAGATTCAGAGTATTGGGATTTACCCAGAGCTACTGCCTGACATGACACAGACGGGGGATGACGAAATCAGTGGGGAAATTAGGAAATTAGAGGAGAAGTATCATGAACAGGTCTCCAACAAGAAAGGGCTGCTAGATGGACTGTTTAGGTCTGCCTCAGAAAAGAAAGAACGCCAAGCAAAGGATCTAGAACAGCGCGCCCTTGACAAACTCGTTGGAATGGCTTATGAGAAGTATTTGGCTTGTTGCGGCCCAAATGCCACTGGGGGAAAGAGTTCCAGTAATAAAATGGCCAAGCAAGCTGCCTTAGCATTTGTCAAACGGACACTGGACCGATGCCATAAATATGAAGAGACAGGAACAAGCTGCTTCAGTGAACCGATATATAGGGATATACTTCTTTCTGTGGCTTCTGATGTTAATGGCGCACGACAAGCAGAGGCTATTGCAGACGGTGAATCCACCAAATCATATGCCTCCACTCGCTGTTTGGAAGGTAGTGTTTCAGCTTCTGTAGGCTCCAAACAACACCATTCACAGTTTAGTCAGAATATGGATAATAATGTTACTTCTTCAGATGTGCTTCCACCTTTAAATCACTTACCTGAACAAGCTACTGGTAGAGAAGAAACATGGACGAACAGGGTGAAGAAGAGGGAATTGTCCCTTGATGATGTTGGTAGTACTATTGGAACTTCAAATTCCCCATCAGGTATTGGAAATTCTCTATCTAGCAGTGCAAAAGGAAAGAGGAGTGAGAGGGATAGAGATGGCAAAGGGCATAACAGGGAGGTCTTATCTAGAAATGGAACTGCTAAAATTGGTCGGCCAGCAGTGTCCAATGTTAAGGGTGAAAGAAAATCAAAAACGAAGCCTAAGCAGAAAACGACTCAGCTATCTGTTTCAGTAAATGGCCCCGTTGGTAAGATATCAGAACAACCCAAACCAGCATTGCCTTCAGTACCAAAGTCTGGCGAAATGACTACCAGTCGGAATCCCAAGCAAAAGGATCAGTTTCCATTAGATGCAATGGAAGACCCTATCGACTTGTCTCACCTGCAATTACCAGGAATGGATGTGTTAGGTGCTGATGATATGGATGGTCAAGCACAGGATTTAGGTTCATGGTTGAATATCGATGATGATGGTTTACAAGATCATGATTTCATGGGTCTTGAAATTCCAATGGATGACCTTTCAGACTTAAATATGATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ada3

Protein Analysis

1276

Amino Acids

138.43

Weight (kDa)

8.85

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ada3 PF10198 863 - 977 1.6e-06 Histone acetyltransferases subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 593, 3675
AatII GACGTC 1 cut(s) 1530
Acc36I ACCTGC 2 cut(s) 593, 3675
AccB1I GGYRCC 1 cut(s) 1735
AccB7I CCANNNNNTGG 4 cut(s) 905, 2186, 2222, 3581
AccBSI CCGCTC 1 cut(s) 1013
AccII CGCG 3 cut(s) 117, 1252, 2808
AccIII TCCGGA 1 cut(s) 2530
AciI CCGC 6 cut(s) 240, 782, 1013, 1250, 1450, 2859
AclWI GGATC 5 cut(s) 2235, 2300, 2541, 2802, 3627
AcoI YGGCCR 6 cut(s) 237, 1426, 2109, 2146, 2901, 3437
AcuI CTGAAG 6 cut(s) 459, 654, 1602, 2965, 3168, 3552
AcyI GRCGYC 1 cut(s) 1527
AfaI GTAC 8 cut(s) 477, 676, 723, 1222, 1336, 1888, 3295, 3573
AflIII ACRYGT 2 cut(s) 156, 1988
AhdI GACNNNNNGTC 1 cut(s) 3597
AjiI CACGTC 1 cut(s) 1991
AjnI CCWGG 6 cut(s) 103, 413, 994, 1708, 2215, 3676
AjuI GAANNNNNNNTTGG 2 cut(s) 127, 159
AloI GAACNNNNNNTCC 2 cut(s) 1785, 1817
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 9 cut(s) 395, 1426, 1665, 1851, 1957, 2248, 2728, 2957, 3666
AlwI GGATC 5 cut(s) 2235, 2300, 2541, 2802, 3627
AlwNI CAGNNNCTG 2 cut(s) 2222, 3122
Ama87I CYCGRG 1 cut(s) 1778
Aor13HI TCCGGA 1 cut(s) 2530
AseI ATTAAT 3 cut(s) 2010, 2210, 2270
Asp700I GAANNNNTTC 3 cut(s) 169, 2601, 2884
AspLEI GCGC 4 cut(s) 219, 2808, 2810, 3038
AspS9I GGNCC 6 cut(s) 75, 560, 1055, 2861, 2941, 3524
AsuC2I CCSGG 3 cut(s) 1572, 1779, 1780
AsuHPI GGTGA 7 cut(s) 297, 898, 1165, 3077, 3268, 3473, 3656
AvaI CYCGRG 1 cut(s) 1778
AvaII GGWCC 2 cut(s) 75, 2941
BalI TGGCCA 3 cut(s) 1428, 2148, 2903
BanI GGYRCC 1 cut(s) 1735
BanII GRGCYC 1 cut(s) 1249
BauI CACGAG 1 cut(s) 1185
BbsI GAAGAC 4 cut(s) 135, 1608, 1791, 3651
Bbv12I GWGCWC 1 cut(s) 249
BbvCI CCTCAGC 2 cut(s) 1584, 1656
BceAI ACGGC 1 cut(s) 1932
BciT130I CCWGG 6 cut(s) 105, 415, 996, 1710, 2217, 3678
BcnI CCSGG 3 cut(s) 1572, 1779, 1780
BcoDI GTCTC 9 cut(s) 395, 1426, 1665, 1851, 1957, 2248, 2728, 2957, 3666
BfmI CTRYAG 2 cut(s) 738, 3123
BfuAI ACCTGC 2 cut(s) 593, 3675
BlpI GCTNAGC 1 cut(s) 1261
BmcAI AGTACT 1 cut(s) 3295
Bme1390I CCNGG 9 cut(s) 105, 415, 996, 1572, 1710, 1779, 1780, 2217, 3678
Bme18I GGWCC 2 cut(s) 75, 2941
BmeRI GACNNNNNGTC 1 cut(s) 3597
BmeT110I CYCGRG 1 cut(s) 1778
BmgBI CACGTC 1 cut(s) 1991
BmgT120I GGNCC 6 cut(s) 75, 560, 1055, 2861, 2941, 3524
BmiI GGNNCC 8 cut(s) 76, 77, 561, 1248, 1737, 1776, 3130, 3526
BmrFI CCNGG 9 cut(s) 105, 415, 996, 1572, 1710, 1779, 1780, 2217, 3678
BmrI ACTGGG 4 cut(s) 1280, 2232, 2445, 2883
BmsI GCATC 7 cut(s) 921, 1244, 1529, 2308, 2335, 2936, 3625
BmuI ACTGGG 4 cut(s) 1280, 2232, 2445, 2883
BoxI GACNNNNGTC 1 cut(s) 2161
BpiI GAAGAC 4 cut(s) 135, 1608, 1791, 3651
BpmI CTGGAG 2 cut(s) 1017, 2630
Bpu10I CCTNAGC 4 cut(s) 1584, 1656, 2917, 3486
Bpu1102I GCTNAGC 1 cut(s) 1261
BpuEI CTTGAG 2 cut(s) 638, 2367
BpuMI CCSGG 3 cut(s) 1572, 1779, 1780
Bsa29I ATCGAT 1 cut(s) 3747
BsaBI GATNNNNATC 1 cut(s) 1399
BsaHI GRCGYC 1 cut(s) 1527
BsaI GGTCTC 4 cut(s) 395, 1426, 1851, 2728
BsaJI CCNNGG 6 cut(s) 184, 414, 982, 1778, 1779, 1789
BsaWI WCCGGW 2 cut(s) 361, 2530
BsaXI ACNNNNNCTCC 2 cut(s) 1785, 1815
Bse118I RCCGGY 1 cut(s) 1348
Bse3DI GCAATG 2 cut(s) 3560, 3645
Bse8I GATNNNNATC 1 cut(s) 1399
BseAI TCCGGA 1 cut(s) 2530
BseBI CCWGG 6 cut(s) 105, 415, 996, 1710, 2217, 3678
BseCI ATCGAT 1 cut(s) 3747
BseDI CCNNGG 6 cut(s) 184, 414, 982, 1778, 1779, 1789
BseJI GATNNNNATC 1 cut(s) 1399
BseMI GCAATG 2 cut(s) 3560, 3645
BseMII CTCAG 6 cut(s) 1275, 1598, 1647, 1892, 2781, 3515
BsePI GCGCGC 1 cut(s) 2806
BseRI GAGGAG 4 cut(s) 1572, 1655, 2717, 3376
BseX3I CGGCCG 1 cut(s) 2109
BseYI CCCAGC 2 cut(s) 1057, 2402
BsgI GTGCAG 1 cut(s) 1608
Bsh1236I CGCG 3 cut(s) 117, 1252, 2808
Bsh1285I CGRYCG 1 cut(s) 2112
BshNI GGYRCC 1 cut(s) 1735
BshVI ATCGAT 1 cut(s) 3747
BsiEI CGRYCG 1 cut(s) 2112
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 1778
BsiSI CCGG 7 cut(s) 362, 1349, 1572, 1779, 2108, 2444, 2531
BslFI GGGAC 9 cut(s) 61, 281, 641, 1194, 1267, 1432, 1838, 2102, 3259
BsmAI GTCTC 9 cut(s) 395, 1426, 1665, 1851, 1957, 2248, 2728, 2957, 3666
BsmFI GGGAC 9 cut(s) 61, 281, 641, 1194, 1267, 1432, 1838, 2102, 3259
BsmI GAATGC 1 cut(s) 1237
Bso31I GGTCTC 4 cut(s) 395, 1426, 1851, 2728
BsoBI CYCGRG 1 cut(s) 1778
Bsp1286I GDGCHC 2 cut(s) 249, 1249
Bsp13I TCCGGA 1 cut(s) 2530
Bsp1407I TGTACA 1 cut(s) 1334
Bsp1720I GCTNAGC 1 cut(s) 1261
Bsp19I CCATGG 1 cut(s) 982
Bsp68I TCGCGA 1 cut(s) 117
BspACI CCGC 6 cut(s) 240, 782, 1013, 1250, 1450, 2859
BspCNI CTCAG 6 cut(s) 1274, 1597, 1648, 1893, 2780, 3514
BspDI ATCGAT 1 cut(s) 3747
BspEI TCCGGA 1 cut(s) 2530
BspFNI CGCG 3 cut(s) 117, 1252, 2808
BspHI TCATGA 2 cut(s) 2713, 3769
BspLI GGNNCC 8 cut(s) 76, 77, 561, 1248, 1737, 1776, 3130, 3526
BspMI ACCTGC 2 cut(s) 593, 3675
BspPI GGATC 5 cut(s) 2235, 2300, 2541, 2802, 3627
BspQI GCTCTTC 1 cut(s) 2049
BspT107I GGYRCC 1 cut(s) 1735
BspTNI GGTCTC 4 cut(s) 395, 1426, 1851, 2728
BsrBI CCGCTC 1 cut(s) 1013
BsrDI GCAATG 2 cut(s) 3560, 3645
BsrFI RCCGGY 1 cut(s) 1348
BsrGI TGTACA 1 cut(s) 1334
BssAI RCCGGY 1 cut(s) 1348
BssECI CCNNGG 6 cut(s) 184, 414, 982, 1778, 1779, 1789
BssHII GCGCGC 1 cut(s) 2806
BssNI GRCGYC 1 cut(s) 1527
BssSI CACGAG 1 cut(s) 1185
BssT1I CCWWGG 3 cut(s) 184, 982, 1789
Bst2BI CACGAG 1 cut(s) 1185
Bst2UI CCWGG 6 cut(s) 105, 415, 996, 1710, 2217, 3678
Bst4CI ACNGT 6 cut(s) 522, 914, 1306, 2754, 3065, 3150
Bst6I CTCTTC 6 cut(s) 34, 482, 2049, 2274, 2955, 3257
BstACI GRCGYC 1 cut(s) 1527
BstAUI TGTACA 1 cut(s) 1334
BstC8I GCNNGC 7 cut(s) 215, 768, 1426, 1945, 2808, 2910, 3441
BstDSI CCRYGG 1 cut(s) 982
BstEII GGTNACC 2 cut(s) 886, 2135
BstFNI CGCG 3 cut(s) 117, 1252, 2808
BstHHI GCGC 4 cut(s) 219, 2808, 2810, 3038
BstMAI GTCTC 9 cut(s) 395, 1426, 1665, 1851, 1957, 2248, 2728, 2957, 3666
BstMCI CGRYCG 1 cut(s) 2112
BstMWI GCNNNNNNNGC 7 cut(s) 940, 1421, 1944, 2075, 2909, 2918, 3044
BstNI CCWGG 6 cut(s) 105, 415, 996, 1710, 2217, 3678
BstNSI RCATGY 2 cut(s) 160, 2587
BstPAI GACNNNNGTC 1 cut(s) 2161
BstPI GGTNACC 2 cut(s) 886, 2135
BstSCI CCNGG 9 cut(s) 103, 413, 994, 1570, 1708, 1777, 1778, 2215, 3676
BstSFI CTRYAG 2 cut(s) 738, 3123
BstUI CGCG 3 cut(s) 117, 1252, 2808
BstV2I GAAGAC 4 cut(s) 135, 1608, 1791, 3651
BstX2I RGATCY 2 cut(s) 2305, 2794
BstYI RGATCY 2 cut(s) 2305, 2794
BstZI CGGCCG 1 cut(s) 2109
Bsu15I ATCGAT 1 cut(s) 3747
BsuTUI ATCGAT 1 cut(s) 3747
BtgI CCRYGG 1 cut(s) 982
BtrI CACGTC 1 cut(s) 1991
BtsI GCAGTG 3 cut(s) 1452, 3352, 3450
BtuMI TCGCGA 1 cut(s) 117
BveI ACCTGC 2 cut(s) 593, 3675
Cac8I GCNNGC 7 cut(s) 215, 768, 1426, 1945, 2808, 2910, 3441
CaiI CAGNNNCTG 2 cut(s) 2222, 3122
CciI TCATGA 2 cut(s) 2713, 3769
CfoI GCGC 4 cut(s) 219, 2808, 2810, 3038
Cfr10I RCCGGY 1 cut(s) 1348
Cfr13I GGNCC 6 cut(s) 75, 560, 1055, 2861, 2941, 3524
Cfr9I CCCGGG 1 cut(s) 1778
ClaI ATCGAT 1 cut(s) 3747
CseI GACGC 1 cut(s) 1572
CsiI ACCWGGT 1 cut(s) 103
Csp6I GTAC 8 cut(s) 476, 675, 722, 1221, 1335, 1887, 3294, 3572
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviQI GTAC 8 cut(s) 476, 675, 722, 1221, 1335, 1887, 3294, 3572
DraI TTTAAA 1 cut(s) 3204
DriI GACNNNNNGTC 1 cut(s) 3597
EaeI YGGCCR 6 cut(s) 237, 1426, 2109, 2146, 2901, 3437
EagI CGGCCG 1 cut(s) 2109
Eam1104I CTCTTC 6 cut(s) 34, 482, 2049, 2274, 2955, 3257
Eam1105I GACNNNNNGTC 1 cut(s) 3597
EarI CTCTTC 6 cut(s) 34, 482, 2049, 2274, 2955, 3257
EclXI CGGCCG 1 cut(s) 2109
Eco130I CCWWGG 3 cut(s) 184, 982, 1789
Eco147I AGGCCT 2 cut(s) 943, 994
Eco24I GRGCYC 1 cut(s) 1249
Eco31I GGTCTC 4 cut(s) 395, 1426, 1851, 2728
Eco32I GATATC 2 cut(s) 1326, 3540
Eco47I GGWCC 2 cut(s) 75, 2941
Eco52I CGGCCG 1 cut(s) 2109
Eco57I CTGAAG 6 cut(s) 459, 654, 1602, 2965, 3168, 3552
Eco88I CYCGRG 1 cut(s) 1778
Eco91I GGTNACC 2 cut(s) 886, 2135
EcoO109I RGGNCCY 1 cut(s) 75
EcoO65I GGTNACC 2 cut(s) 886, 2135
EcoRI GAATTC 2 cut(s) 2407, 2567
EcoRII CCWGG 6 cut(s) 103, 413, 994, 1708, 2215, 3676
EcoRV GATATC 2 cut(s) 1326, 3540
EcoT14I CCWWGG 3 cut(s) 184, 982, 1789
EcoT22I ATGCAT 1 cut(s) 1237
EcoT38I GRGCYC 1 cut(s) 1249
ErhI CCWWGG 3 cut(s) 184, 982, 1789
FalI AAGNNNNNCTT 4 cut(s) 154, 186, 1594, 1626
FaqI GGGAC 9 cut(s) 61, 281, 641, 1194, 1267, 1432, 1838, 2102, 3259
FauI CCCGC 1 cut(s) 1457
FauNDI CATATG 1 cut(s) 3082
FriOI GRGCYC 1 cut(s) 1249
GlaI GCGC 4 cut(s) 218, 2807, 2809, 3037
GsaI CCCAGC 2 cut(s) 1061, 2406
GsuI CTGGAG 2 cut(s) 1017, 2630
HapII CCGG 7 cut(s) 362, 1349, 1572, 1779, 2108, 2444, 2531
HgaI GACGC 1 cut(s) 1572
HhaI GCGC 4 cut(s) 219, 2808, 2810, 3038
Hin1I GRCGYC 1 cut(s) 1527
Hin6I GCGC 4 cut(s) 217, 2806, 2808, 3036
HinP1I GCGC 4 cut(s) 217, 2806, 2808, 3036
HincII GTYRAC 1 cut(s) 2389
HindII GTYRAC 1 cut(s) 2389
HpaI GTTAAC 1 cut(s) 2389
HpaII CCGG 7 cut(s) 362, 1349, 1572, 1779, 2108, 2444, 2531
HphI GGTGA 7 cut(s) 297, 898, 1165, 3077, 3268, 3473, 3656
Hpy166II GTNNAC 9 cut(s) 476, 896, 1156, 1607, 1952, 2389, 2525, 2987, 3761
Hpy8I GTNNAC 9 cut(s) 476, 896, 1156, 1607, 1952, 2389, 2525, 2987, 3761
HpyAV CCTTC 6 cut(s) 376, 1072, 1110, 2456, 3098, 3576
HpyCH4III ACNGT 6 cut(s) 522, 914, 1306, 2754, 3065, 3150
HpyCH4IV ACGT 3 cut(s) 799, 1527, 1990
HpyF10VI GCNNNNNNNGC 7 cut(s) 940, 1421, 1944, 2075, 2909, 2918, 3044
HpySE526I ACGT 3 cut(s) 799, 1527, 1990
Hsp92I GRCGYC 1 cut(s) 1527
HspAI GCGC 4 cut(s) 217, 2806, 2808, 3036
KflI GGGWCCC 1 cut(s) 75
Kpn2I TCCGGA 1 cut(s) 2530
KspAI GTTAAC 1 cut(s) 2389
LguI GCTCTTC 1 cut(s) 2049
LmnI GCTCC 5 cut(s) 1010, 1252, 1361, 1780, 3134
LweI GCATC 7 cut(s) 921, 1244, 1529, 2308, 2335, 2936, 3625
MabI ACCWGGT 1 cut(s) 103
MaeII ACGT 3 cut(s) 799, 1527, 1990
MbiI CCGCTC 1 cut(s) 1013
MfeI CAATTG 2 cut(s) 900, 1479
MflI RGATCY 2 cut(s) 2305, 2794
MhlI GDGCHC 2 cut(s) 249, 1249
MlsI TGGCCA 3 cut(s) 1428, 2148, 2903
MluNI TGGCCA 3 cut(s) 1428, 2148, 2903
MlyI GAGTC 7 cut(s) 598, 971, 1008, 1652, 2098, 2250, 3493
MmeI TCCRAC 7 cut(s) 997, 1003, 1011, 1339, 2751, 2806, 3581
Mox20I TGGCCA 3 cut(s) 1428, 2148, 2903
Mph1103I ATGCAT 1 cut(s) 1237
MroI TCCGGA 1 cut(s) 2530
MroXI GAANNNNTTC 3 cut(s) 169, 2601, 2884
MscI TGGCCA 3 cut(s) 1428, 2148, 2903
MslI CAYNNNNRTG 2 cut(s) 2592, 2955
Msp20I TGGCCA 3 cut(s) 1428, 2148, 2903
MspA1I CMGCKG 3 cut(s) 1265, 1622, 1900
MspI CCGG 7 cut(s) 362, 1349, 1572, 1779, 2108, 2444, 2531
MspR9I CCNGG 9 cut(s) 105, 415, 996, 1572, 1710, 1779, 1780, 2217, 3678
MunI CAATTG 2 cut(s) 900, 1479
Mva1269I GAATGC 1 cut(s) 1237
MvaI CCWGG 6 cut(s) 105, 415, 996, 1710, 2217, 3678
MvnI CGCG 3 cut(s) 117, 1252, 2808
MwoI GCNNNNNNNGC 7 cut(s) 940, 1421, 1944, 2075, 2909, 2918, 3044
NciI CCSGG 3 cut(s) 1572, 1779, 1780
NcoI CCATGG 1 cut(s) 982
NdeI CATATG 1 cut(s) 3082
NlaIV GGNNCC 8 cut(s) 76, 77, 561, 1248, 1737, 1776, 3130, 3526
NmuCI GTSAC 6 cut(s) 193, 886, 1000, 1528, 1538, 2098
NruI TCGCGA 1 cut(s) 117
NsiI ATGCAT 1 cut(s) 1237
NspI RCATGY 2 cut(s) 160, 2587
PagI TCATGA 2 cut(s) 2713, 3769
PaqCI CACCTGC 2 cut(s) 593, 3675
PauI GCGCGC 1 cut(s) 2806
PceI AGGCCT 2 cut(s) 943, 994
PciI ACATGT 1 cut(s) 156
PciSI GCTCTTC 1 cut(s) 2049
PcsI WCGNNNNNNNCGW 1 cut(s) 1249
PctI GAATGC 1 cut(s) 1237
PdmI GAANNNNTTC 3 cut(s) 169, 2601, 2884
PflMI CCANNNNNTGG 4 cut(s) 905, 2186, 2222, 3581
PleI GAGTC 7 cut(s) 597, 971, 1007, 1651, 2098, 2250, 3493
PpsI GAGTC 7 cut(s) 597, 971, 1007, 1651, 2098, 2250, 3493
PpuMI RGGWCCY 1 cut(s) 75
PscI ACATGT 1 cut(s) 156
PshAI GACNNNNGTC 1 cut(s) 2161
PshBI ATTAAT 3 cut(s) 2010, 2210, 2270
Psp5II RGGWCCY 1 cut(s) 75
Psp6I CCWGG 6 cut(s) 103, 413, 994, 1708, 2215, 3676
PspEI GGTNACC 2 cut(s) 886, 2135
PspFI CCCAGC 2 cut(s) 1057, 2402
PspGI CCWGG 6 cut(s) 103, 413, 994, 1708, 2215, 3676
PspN4I GGNNCC 8 cut(s) 76, 77, 561, 1248, 1737, 1776, 3130, 3526
PspPI GGNCC 6 cut(s) 75, 560, 1055, 2861, 2941, 3524
PspPPI RGGWCCY 1 cut(s) 75
PstNI CAGNNNCTG 2 cut(s) 2222, 3122
PsuI RGATCY 2 cut(s) 2305, 2794
PteI GCGCGC 1 cut(s) 2806
PvuII CAGCTG 3 cut(s) 1265, 1622, 1900
RruI TCGCGA 1 cut(s) 117
RsaI GTAC 8 cut(s) 477, 676, 723, 1222, 1336, 1888, 3295, 3573
RsaNI GTAC 8 cut(s) 476, 675, 722, 1221, 1335, 1887, 3294, 3572
RseI CAYNNNNRTG 2 cut(s) 2592, 2955
SapI GCTCTTC 1 cut(s) 2049
Sau96I GGNCC 6 cut(s) 75, 560, 1055, 2861, 2941, 3524
ScaI AGTACT 1 cut(s) 3295
SchI GAGTC 7 cut(s) 598, 971, 1008, 1652, 2098, 2250, 3493
ScrFI CCNGG 9 cut(s) 105, 415, 996, 1572, 1710, 1779, 1780, 2217, 3678
SduI GDGCHC 2 cut(s) 249, 1249
SexAI ACCWGGT 1 cut(s) 103
SfaNI GCATC 7 cut(s) 921, 1244, 1529, 2308, 2335, 2936, 3625
SfcI CTRYAG 2 cut(s) 738, 3123
SinI GGWCC 2 cut(s) 75, 2941
SmaI CCCGGG 1 cut(s) 1780
SmiMI CAYNNNNRTG 2 cut(s) 2592, 2955
SmlI CTYRAG 2 cut(s) 617, 2382
SmoI CTYRAG 2 cut(s) 617, 2382
SseBI AGGCCT 2 cut(s) 943, 994
SsiI CCGC 6 cut(s) 240, 782, 1013, 1250, 1450, 2859
SspI AATATT 1 cut(s) 1720
StuI AGGCCT 2 cut(s) 943, 994
StyD4I CCNGG 9 cut(s) 103, 413, 994, 1570, 1708, 1777, 1778, 2215, 3676
StyI CCWWGG 3 cut(s) 184, 982, 1789
TaaI ACNGT 6 cut(s) 522, 914, 1306, 2754, 3065, 3150
TaiI ACGT 3 cut(s) 802, 1530, 1993
TaqI TCGA 7 cut(s) 222, 1297, 1975, 2088, 2165, 3654, 3747
TaqII GACCGA 2 cut(s) 537, 2958
TatI WGTACW 3 cut(s) 1220, 1334, 3293
TauI GCSGC 2 cut(s) 242, 2862
TseFI GTSAC 6 cut(s) 193, 886, 1000, 1528, 1538, 2098
Tsp45I GTSAC 6 cut(s) 193, 886, 1000, 1528, 1538, 2098
TspGWI ACGGA 6 cut(s) 309, 383, 947, 1050, 1055, 2947
TspMI CCCGGG 1 cut(s) 1778
Van91I CCANNNNNTGG 4 cut(s) 905, 2186, 2222, 3581
VpaK11BI GGWCC 2 cut(s) 75, 2941
VspI ATTAAT 3 cut(s) 2010, 2210, 2270
XbaI TCTAGA 2 cut(s) 2797, 3410
XceI RCATGY 2 cut(s) 160, 2587
XcmI CCANNNNNNNNNTGG 3 cut(s) 2156, 2896, 3097
XmaI CCCGGG 1 cut(s) 1778
XmnI GAANNNNTTC 3 cut(s) 169, 2601, 2884
ZraI GACGTC 1 cut(s) 1528
ZrmI AGTACT 1 cut(s) 3295
Zsp2I ATGCAT 1 cut(s) 1237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.