Rorug02G0040600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005061
Physical Location & Seq
Forward (+)
3173133 .. 3173640
508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0040600.1

Sequence Viewer

Length: 411 bp
ATGGCAGCCCTTCCTCATGTTGACTCTGCGTGGGTTTCTCTTGGATCGGCGGGGCTGGAAGCTCTGCAAATCGATCGTTGGTACACGGTGGGGAGATTCCTTGGACCTAAAGCCATGTTTCCCGGTTTCAAAGGCACAATTCCATCATCTGGAAGATCAAATCTGGAACACTATGCTCGTACTCGAAAATTTGATGGAATGGGCTCGCTGTCGGAGGTCCCTTTGAATCTCTTGGAGACCTGGGTTGCGGTTAAGGGGTTGCCTTTAATCCTACGCAACAAAACGGCCTTGCATCTAATAGGTTCTACGATCGGACATGTACTTCGGTTCGATCAGACTGCTCTTCATAGGAAGGAGGAGGAACAACATATTAGACTGATATTTGATGTGCGATGTCGAGTCCGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ada3

Protein Analysis

136

Amino Acids

15.29

Weight (kDa)

9.99

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 149
AciI CCGC 2 cut(s) 50, 248
AclWI GGATC 1 cut(s) 52
AcsI RAATTY 1 cut(s) 188
AfaI GTAC 3 cut(s) 83, 181, 321
AfiI CCNNNNNNNGG 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 316
AgsI TTSAA 2 cut(s) 130, 226
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 52
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 306, 338
AspS9I GGNCC 2 cut(s) 104, 217
AsuC2I CCSGG 1 cut(s) 123
AvaII GGWCC 2 cut(s) 104, 217
BanII GRGCYC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 151, 188
BceAI ACGGC 1 cut(s) 300
BcgI CGANNNNNNTGC 4 cut(s) 56, 90, 320, 354
BciT130I CCWGG 1 cut(s) 241
BcnI CCSGG 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 230
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 123, 241
Bme18I GGWCC 2 cut(s) 104, 217
BmgT120I GGNCC 2 cut(s) 104, 217
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 2 cut(s) 123, 241
BmsI GCATC 1 cut(s) 301
BpuMI CCSGG 1 cut(s) 123
Bsa29I ATCGAT 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 100, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 241
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 100, 240
BseLI CCNNNNNNNGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 371
BseXI GCAGC 1 cut(s) 17
Bsh1285I CGRYCG 2 cut(s) 76, 312
BshFI GGCC 1 cut(s) 287
BshVI ATCGAT 1 cut(s) 72
BsiEI CGRYCG 2 cut(s) 76, 312
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 287
Bso31I GGTCTC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 5 cut(s) 44, 73, 155, 309, 331
BspACI CCGC 2 cut(s) 50, 248
BspANI GGCC 1 cut(s) 287
BspDI ATCGAT 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 1 cut(s) 52
BspQI GCTCTTC 1 cut(s) 348
BspTNI GGTCTC 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 100, 240
BssMI GATC 5 cut(s) 44, 73, 155, 309, 331
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 206
BstKTI GATC 5 cut(s) 47, 76, 158, 312, 334
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 5 cut(s) 44, 73, 155, 309, 331
BstMCI CGRYCG 2 cut(s) 76, 312
BstNI CCWGG 1 cut(s) 241
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 121, 239
BstV1I GCAGC 1 cut(s) 17
Bsu15I ATCGAT 1 cut(s) 72
BsuRI GGCC 1 cut(s) 287
BsuTUI ATCGAT 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 406
Cac8I GCNNGC 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 104, 217
ClaI ATCGAT 1 cut(s) 72
Csp6I GTAC 3 cut(s) 82, 180, 320
CviAII CATG 3 cut(s) 17, 115, 317
CviJI RGCY 6 cut(s) 8, 55, 62, 113, 204, 287
CviKI_1 RGCY 6 cut(s) 8, 55, 62, 113, 204, 287
CviQI GTAC 3 cut(s) 82, 180, 320
DpnI GATC 5 cut(s) 46, 75, 157, 311, 333
DpnII GATC 5 cut(s) 44, 73, 155, 309, 331
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 206
Eco31I GGTCTC 1 cut(s) 230
Eco47I GGWCC 2 cut(s) 104, 217
EcoO109I RGGNCCY 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 3 cut(s) 20, 118, 320
FaiI YATR 6 cut(s) 18, 116, 174, 318, 348, 369
FaqI GGGAC 1 cut(s) 203
FatI CATG 3 cut(s) 16, 114, 316
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 287
HapII CCGG 1 cut(s) 123
Hin1II CATG 3 cut(s) 20, 118, 320
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 4 cut(s) 23, 96, 226, 399
HpaII CCGG 1 cut(s) 123
Hpy166II GTNNAC 2 cut(s) 22, 84
Hpy188I TCNGA 4 cut(s) 214, 314, 336, 410
Hpy188III TCNNGA 2 cut(s) 150, 164
Hpy8I GTNNAC 2 cut(s) 22, 84
HpyAV CCTTC 2 cut(s) 20, 346
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 67, 292
Hsp92II CATG 3 cut(s) 20, 118, 320
Kzo9I GATC 5 cut(s) 44, 73, 155, 309, 331
LguI GCTCTTC 1 cut(s) 348
LpnPI CCDG 6 cut(s) 41, 135, 136, 149, 226, 253
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 301
MalI GATC 5 cut(s) 46, 75, 157, 311, 333
MboI GATC 5 cut(s) 44, 73, 155, 309, 331
MboII GAAGA 2 cut(s) 165, 335
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 2 cut(s) 138, 188
MlyI GAGTC 2 cut(s) 17, 408
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 4 cut(s) 24, 208, 349, 352
MseI TTAA 2 cut(s) 252, 266
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 2 cut(s) 123, 241
MvaI CCWGG 1 cut(s) 241
NciI CCSGG 1 cut(s) 123
NdeII GATC 5 cut(s) 44, 73, 155, 309, 331
NlaIII CATG 3 cut(s) 20, 118, 320
NlaIV GGNNCC 1 cut(s) 219
NspI RCATGY 1 cut(s) 320
PciI ACATGT 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 96, 226
PflMI CCANNNNNTGG 1 cut(s) 149
PkrI GCNGC 1 cut(s) 7
Ple19I CGATCG 2 cut(s) 76, 312
PleI GAGTC 2 cut(s) 17, 407
PpsI GAGTC 2 cut(s) 17, 407
PpuMI RGGWCCY 1 cut(s) 217
PscI ACATGT 1 cut(s) 316
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 2 cut(s) 104, 217
PspPPI RGGWCCY 1 cut(s) 217
PvuI CGATCG 2 cut(s) 76, 312
RsaI GTAC 3 cut(s) 83, 181, 321
RsaNI GTAC 3 cut(s) 82, 180, 320
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 2 cut(s) 252, 266
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 5 cut(s) 44, 73, 155, 309, 331
Sau96I GGNCC 2 cut(s) 104, 217
SchI GAGTC 2 cut(s) 17, 408
ScrFI CCNGG 2 cut(s) 123, 241
SduI GDGCHC 1 cut(s) 206
SetI ASST 5 cut(s) 64, 109, 219, 242, 304
SfaNI GCATC 1 cut(s) 301
SinI GGWCC 2 cut(s) 104, 217
Sse9I AATT 2 cut(s) 138, 188
SsiI CCGC 2 cut(s) 50, 248
StyD4I CCNGG 2 cut(s) 121, 239
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 4 cut(s) 72, 184, 330, 397
TasI AATT 2 cut(s) 138, 188
TatI WGTACW 1 cut(s) 319
TfiI GAWTC 2 cut(s) 96, 226
Tru1I TTAA 2 cut(s) 252, 266
Tru9I TTAA 2 cut(s) 252, 266
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 335
TspGWI ACGGA 1 cut(s) 392
Van91I CCANNNNNTGG 1 cut(s) 149
VpaK11BI GGWCC 2 cut(s) 104, 217
XapI RAATTY 1 cut(s) 188
XceI RCATGY 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.