Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010745

Physical Location & Seq

Genomic Coordinates Forward (+)

4777829 .. 4778544

Gene Structure 716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTGTGTAGCTGTGAATCTTTCATCCAGAAGACGAAGCATATACATCTCGGTTTCAGAACTGAGGAAGAATGATGAAGAGAGTGATCAGTCTGAGTCAGTGGGAAAATTAGAAGAAATAAAGGAGGAGATGAAAGATGAGAATTTGGCCGAAGTGGAAGCTATTCCTCAGTTTAGAATCACTGAAGTCCATGTTGCAGGTCTGAAAACCGAGCCAGATAAAAAGAAGCCATGGGGTACTGCAAACCAGAAACAGTCCGGTTCCCGCTGGTTGCTTGCTAATGGAATGGGGAAAAGCAATAAGCATCCAATTATGAAGTCAAAAGCTGCTCCAAAATCTTCTGGTCCAGCAACAACAAAGGTTCAGCCTGGTGATACCTTGTGGAGCATCTCAGCACGCGTTCATGGTACTGGAGAAAAATGGAAGGAATTGGCAGCACTAAATCCGCATATAAGGAACCCCAATGTTATTTTTCCGAATGAAACTCTCAGATTAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006928 GO:0006996 GO:0007097 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009987 GO:0016043 GO:0019750 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0099515

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM NT-C2

Protein Analysis

167

Amino Acids

18.46

Weight (kDa)

9.35

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM	PF01476	120 - 165	5.5e-11	LysM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20610
fragaria_vesca	FvH4_1g08130
malus_domestica	MD02G1085800.v1.1 MD15G1213000.v1.1
prunus_persica	Prupe.7G203900_v2.0.a1
pyrus_communis	pycom02g06870 pycom02g06880 pycom15g18930 pycom15g18940
rosa_chinensis	RchiOBHm_Chr2g0094181
rosa_laevigata	RLG00000016463
rosa_multiflora	Rmu_sc0002193.1_g000003 Rmu_sc0013176.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147410
rosa_rugosa	Rorug02G0041600 Rorug02G0041700
rosa_samantha	Rh2AG089300 Rh2BG089400 Rh2CG091900 Rh2DG088400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	188
AccII	CGCG	1 cut(s)	399
AciI	CCGC	2 cut(s)	265, 446
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	2 cut(s)	238, 409
AflIII	ACRYGT	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	4 cut(s)	11, 161, 326, 498
AluI	AGCT	4 cut(s)	11, 161, 326, 498
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	326, 434
ApoI	RAATTY	1 cut(s)	142
Asp700I	GAANNNNTTC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	313, 446
BciT130I	CCWGG	1 cut(s)	369
BclI	TGATCA	1 cut(s)	85
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	327, 435
BlsI	GCNGC	2 cut(s)	328, 436
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	262, 458
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	2 cut(s)	313, 396
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	2 cut(s)	23, 304
BseMII	CTCAG	4 cut(s)	53, 84, 182, 405
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	313, 446
Bsh1236I	CGCG	1 cut(s)	399
BshFI	GGCC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	258
BsnI	GGCC	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	85
Bsp19I	CCATGG	1 cut(s)	230
BspACI	CCGC	2 cut(s)	265, 446
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	5 cut(s)	54, 85, 181, 404, 501
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	262, 458
BspMI	ACCTGC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	72
BstC8I	GCNNGC	2 cut(s)	276, 397
BstDEI	CTNAG	5 cut(s)	62, 93, 168, 391, 488
BstDSI	CCRYGG	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	23, 304
BstFNI	CGCG	1 cut(s)	399
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	367
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	313, 446
BstV2I	GAAGAC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	23, 304
BtsIMutI	CAGTG	2 cut(s)	105, 180
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	276, 397
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	237, 408
CviAII	CATG	3 cut(s)	191, 231, 404
CviJI	RGCY	8 cut(s)	11, 149, 161, 214, 229, 326, 367, 498
CviKI_1	RGCY	8 cut(s)	11, 149, 161, 214, 229, 326, 367, 498
CviQI	GTAC	2 cut(s)	237, 408
DdeI	CTNAG	5 cut(s)	62, 93, 168, 391, 488
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	3 cut(s)	194, 234, 407
FaiI	YATR	8 cut(s)	41, 43, 192, 232, 314, 405, 450, 452
FatI	CATG	3 cut(s)	190, 230, 403
FauI	CCCGC	1 cut(s)	272
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	327, 435
FokI	GGATG	2 cut(s)	10, 291
Fsp4HI	GCNGC	2 cut(s)	327, 435
GluI	GCNGC	2 cut(s)	327, 435
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	1 cut(s)	258
Hin1II	CATG	3 cut(s)	194, 234, 407
HinfI	GANTC	3 cut(s)	16, 95, 177
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	383
Hpy188I	TCNGA	5 cut(s)	58, 94, 204, 477, 491
Hpy188III	TCNNGA	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4V	TGCA	2 cut(s)	197, 242
HpyF3I	CTNAG	5 cut(s)	62, 93, 168, 391, 488
Hsp92II	CATG	3 cut(s)	194, 234, 407
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	2 cut(s)	334, 384
Lsp1109I	GCAGC	2 cut(s)	313, 446
LweI	GCATC	2 cut(s)	313, 396
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	5 cut(s)	42, 79, 89, 125, 330
MluCI	AATT	4 cut(s)	107, 142, 309, 428
MluI	ACGCGT	1 cut(s)	397
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	3 cut(s)	57, 118, 177
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
MvnI	CGCG	1 cut(s)	399
NcoI	CCATGG	1 cut(s)	230
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	3 cut(s)	194, 234, 407
NlaIV	GGNNCC	2 cut(s)	262, 458
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	16, 177
PkrI	GCNGC	2 cut(s)	328, 436
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	2 cut(s)	262, 458
PspPI	GGNCC	1 cut(s)	344
RsaI	GTAC	2 cut(s)	238, 409
RsaNI	GTAC	2 cut(s)	237, 408
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	2 cut(s)	327, 435
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	369
SetI	ASST	7 cut(s)	13, 163, 202, 328, 363, 380, 500
SfaNI	GCATC	2 cut(s)	313, 396
SinI	GGWCC	1 cut(s)	344
Sse9I	AATT	4 cut(s)	107, 142, 309, 428
SsiI	CCGC	2 cut(s)	265, 446
StyD4I	CCNGG	1 cut(s)	367
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	255
TasI	AATT	4 cut(s)	107, 142, 309, 428
TfiI	GAWTC	2 cut(s)	16, 177
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	2 cut(s)	105, 187
TseI	GCWGC	2 cut(s)	326, 434
TspDTI	ATGAA	6 cut(s)	12, 90, 146, 329, 392, 495
TspRI	CASTG	2 cut(s)	105, 187
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.