Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002261

Physical Location & Seq

Genomic Coordinates Reverse (-)

3239868 .. 3243586

Gene Structure 3719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0041700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCTAGCACACAACTTTCCGACCAAGTTTTCAGGCCAATCCCTGCCGTGTGCGTCAGTTTGCGGCGACTGAGCACCACCAAACCGAATAAACTACCATGCCACCCACGTCCCAAAGCCTTGAAACACAAACACTTGGGGCTTCAAACAGCGCAGAAGTACTACTCAAAGTGGGCTGTTAGACTTAGCTTAGTAGACCAAAGCCCGGCAAAATCAACCGTCGACATGGAACGGGATCCAATCACCAAGCATGACTCTATAACTGGCTACTTGTTGAACATTGCCTTCTTGAAGACAGTCTTCACTCCCAAGTTCCAGTTGCATTGGGTCAAACAGTCAGGACCATATGAAATCACTACAAGGTGGACTATGGTTATGAAATTCATCCCTCTGCCTTGGAAACCAGAATTGATCTTCACTGGTACTTCTGTTATGGGAATCAACCCTGAAACCGGGAAGTTCTGCAGCCATGTGGACTTCTGGGATTCCATAAGGAAGAATGACTATTTTTCTGTAGAAGGTTTGTTAGATGTATTCAAGCAGCTGAGGATTTACAAAACTCCAGACTTGGAAACACCAAAATATGAGATACTAAAGAGAACAGCAAATTATGAGGTAAGAAAGTACTCCCCTTTTATAGTGGTAGAAGGAAGTGTAGACAAGCTGTCTGGATCAGCTGGTTTCAATGATGTTACTGGGTACATCTTCGGAAAGAACTCGAAAATGGAGAAGATACCAATGACAACTCCAGTGTTCACAGAGGCATCTGATGCTGAATTTTCCAAAGTATCCATCAAAGTATGTCTTCCACTAGACAAGGATTTAAGCAGTTTACCAGATCCTAATGCAGAAACAATTAGCTTGAAAAAAATGGAAGAAGGCATTGCTGCTGTTACCAAGTTCAGTGGGAAGCCTACCGAAGATGTTGTTCGTGAAAAGGAGAAATTGCTGCGTGCTAGTCTTATTAGAGATGGTCTCAAACCTAAGGCCGGTTGTATGCTTGCTCGTTACAATGACCCCGGCCGAACTTGGAGCTTTATACTGAGAAATGAAGTGCTGATATGGCTGGAGGAATTCACATTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006928 GO:0006996 GO:0007097 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009987 GO:0016043 GO:0019750 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0099515

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM NT-C2

Protein Analysis

362

Amino Acids

41.22

Weight (kDa)

9.29

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2358	PF10184	78 - 157	7.2e-18	Uncharacterized conserved protein (DUF2358)
SOUL	PF04832	190 - 354	1.8e-37	SOUL heme-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08140 FvH4_2g31310 FvH4_2g31340
malus_domestica	MD02G1085900.v1.1 MD08G1068900.v1.1 MD15G1053400.v1.1 MD15G1213100.v1.1
prunus_persica	Prupe.1G407000_v2.0.a1 Prupe.7G203800_v2.0.a1
pyrus_communis	pycom02g06910 pycom08g05680 pycom15g05070 pycom15g18950
rosa_chinensis	RchiOBHm_Chr2g0094191 RchiOBHm_Chr2g0094201 RchiOBHm_Chr6g0311481
rosa_laevigata	RLG00000010402 RLG00000016464 RLG00000016465
rosa_multiflora	Rmu_sc0002193.1_g000004 Rmu_sc0002193.1_g000006 Rmu_sc0006915.1_g000013 Rmu_sc0013176.1_g000001 Rmu_sc0013619.1_g000007 Rmu_sc0015790.1_g000005
rosa_roxburghii	Rroxscaffold_2G00147390 Rroxscaffold_2G00147400 Rroxscaffold_7G00157580
rosa_rugosa	Rorug02G0041700 Rorug02G0041700 Rorug06G0389300
rosa_samantha	Rh2AG089400 Rh2AG089500 Rh2BG089500 Rh2BG089600 Rh2CG092000 Rh2CG092100 Rh2DG088500 Rh6AG503800 Rh6BG514400 Rh6CG520200 Rh6DG506300
rosa_wichuraiana	Rw6G043880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	195, 222, 657
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	4 cut(s)	230, 243, 679, 833
AcoI	YGGCCR	1 cut(s)	1021
AcsI	RAATTY	3 cut(s)	380, 776, 1073
AfaI	GTAC	4 cut(s)	161, 424, 626, 701
AfiI	CCNNNNNNNGG	3 cut(s)	205, 452, 989
AgsI	TTSAA	7 cut(s)	124, 146, 277, 292, 538, 685, 865
AhdI	GACNNNNNGTC	1 cut(s)	664
AjiI	CACGTC	1 cut(s)	110
AluBI	AGCT	6 cut(s)	189, 544, 664, 677, 861, 1035
AluI	AGCT	6 cut(s)	189, 544, 664, 677, 861, 1035
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	980
AlwI	GGATC	4 cut(s)	230, 243, 679, 833
AoxI	GGCC	3 cut(s)	35, 987, 1021
ApeKI	GCWGC	4 cut(s)	465, 541, 887, 949
ApoI	RAATTY	3 cut(s)	380, 776, 1073
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	341
AsuC2I	CCSGG	3 cut(s)	206, 454, 1020
AsuHPI	GGTGA	1 cut(s)	235
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	341
AxyI	CCTNAGG	1 cut(s)	984
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BamHI	GGATCC	1 cut(s)	235
BbsI	GAAGAC	3 cut(s)	292, 299, 797
Bbv12I	GWGCWC	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	545
BbvI	GCAGC	4 cut(s)	477, 553, 874, 936
BccI	CCATC	2 cut(s)	800, 965
BceAI	ACGGC	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	799
BcnI	CCSGG	3 cut(s)	206, 454, 1020
BcoDI	GTCTC	1 cut(s)	980
BfaI	CTAG	3 cut(s)	6, 812, 957
BfmI	CTRYAG	2 cut(s)	463, 513
BfuI	GTATCC	1 cut(s)	799
BisI	GCNGC	5 cut(s)	65, 466, 542, 888, 950
BlsI	GCNGC	5 cut(s)	66, 467, 543, 889, 951
BmcAI	AGTACT	2 cut(s)	161, 626
Bme1390I	CCNGG	3 cut(s)	206, 454, 1020
Bme18I	GGWCC	1 cut(s)	341
BmeRI	GACNNNNNGTC	1 cut(s)	664
BmgBI	CACGTC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	3 cut(s)	206, 454, 1020
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	2 cut(s)	760, 773
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	3 cut(s)	292, 299, 797
BplI	GAGNNNNNCTC	2 cut(s)	960, 992
BpmI	CTGGAG	3 cut(s)	546, 732, 1088
Bpu10I	CCTNAGC	1 cut(s)	545
BpuMI	CCSGG	3 cut(s)	206, 454, 1020
BsaI	GGTCTC	1 cut(s)	980
BsaJI	CCNNGG	2 cut(s)	395, 1018
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 452, 989
Bse118I	RCCGGY	1 cut(s)	989
Bse1I	ACTGG	5 cut(s)	268, 316, 424, 700, 749
Bse21I	CCTNAGG	1 cut(s)	984
Bse3DI	GCAATG	2 cut(s)	279, 882
BseDI	CCNNGG	2 cut(s)	395, 1018
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	3 cut(s)	205, 452, 989
BseMI	GCAATG	2 cut(s)	279, 882
BseMII	CTCAG	3 cut(s)	62, 536, 1034
BseNI	ACTGG	5 cut(s)	268, 316, 424, 700, 749
BseX3I	CGGCCG	1 cut(s)	1021
BseXI	GCAGC	4 cut(s)	477, 553, 874, 936
Bsh1285I	CGRYCG	1 cut(s)	1024
BshFI	GGCC	3 cut(s)	37, 989, 1023
BsiEI	CGRYCG	1 cut(s)	1024
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	4 cut(s)	206, 453, 990, 1020
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	3 cut(s)	205, 452, 989
BsmAI	GTCTC	1 cut(s)	980
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	3 cut(s)	37, 989, 1023
Bso31I	GGTCTC	1 cut(s)	980
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	4 cut(s)	235, 411, 671, 838
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	3 cut(s)	37, 989, 1023
BspCNI	CTCAG	3 cut(s)	63, 537, 1035
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	467
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	4 cut(s)	230, 243, 679, 833
BspTNI	GGTCTC	1 cut(s)	980
BsrDI	GCAATG	2 cut(s)	279, 882
BsrFI	RCCGGY	1 cut(s)	989
BsrI	ACTGG	5 cut(s)	268, 316, 424, 700, 749
BssAI	RCCGGY	1 cut(s)	989
BssECI	CCNNGG	2 cut(s)	395, 1018
BssMI	GATC	4 cut(s)	235, 411, 671, 838
BssT1I	CCWWGG	1 cut(s)	395
Bst4CI	ACNGT	3 cut(s)	220, 298, 336
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstC8I	GCNNGC	3 cut(s)	7, 954, 1002
BstDEI	CTNAG	6 cut(s)	71, 185, 190, 545, 984, 1043
BstF5I	GGATG	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	4 cut(s)	238, 414, 674, 841
BstMAI	GTCTC	1 cut(s)	980
BstMBI	GATC	4 cut(s)	235, 411, 671, 838
BstMCI	CGRYCG	1 cut(s)	1024
BstMWI	GCNNNNNNNGC	2 cut(s)	770, 1063
BstSCI	CCNGG	3 cut(s)	204, 452, 1018
BstSFI	CTRYAG	2 cut(s)	463, 513
BstV1I	GCAGC	4 cut(s)	477, 553, 874, 936
BstV2I	GAAGAC	3 cut(s)	292, 299, 797
BstX2I	RGATCY	2 cut(s)	235, 838
BstYI	RGATCY	2 cut(s)	235, 838
BstZI	CGGCCG	1 cut(s)	1021
Bsu36I	CCTNAGG	1 cut(s)	984
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	3 cut(s)	37, 989, 1023
BtrI	CACGTC	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	384
BtsIMutI	CAGTG	3 cut(s)	417, 756, 910
Cac8I	GCNNGC	3 cut(s)	7, 954, 1002
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	989
Cfr13I	GGNCC	1 cut(s)	341
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	4 cut(s)	160, 423, 625, 700
CspCI	CAANNNNNGTGG	2 cut(s)	886, 921
CviAII	CATG	4 cut(s)	99, 226, 251, 470
CviQI	GTAC	4 cut(s)	160, 423, 625, 700
DdeI	CTNAG	6 cut(s)	71, 185, 190, 545, 984, 1043
DpnI	GATC	4 cut(s)	237, 413, 673, 840
DpnII	GATC	4 cut(s)	235, 411, 671, 838
DriI	GACNNNNNGTC	1 cut(s)	664
EaeI	YGGCCR	1 cut(s)	1021
EagI	CGGCCG	1 cut(s)	1021
Eam1105I	GACNNNNNGTC	1 cut(s)	664
EclXI	CGGCCG	1 cut(s)	1021
Eco130I	CCWWGG	1 cut(s)	395
Eco31I	GGTCTC	1 cut(s)	980
Eco47I	GGWCC	1 cut(s)	341
Eco52I	CGGCCG	1 cut(s)	1021
Eco81I	CCTNAGG	1 cut(s)	984
EcoRI	GAATTC	1 cut(s)	1073
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	4 cut(s)	102, 229, 254, 473
FalI	AAGNNNNNCTT	4 cut(s)	284, 316, 789, 821
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	4 cut(s)	98, 225, 250, 469
FauNDI	CATATG	1 cut(s)	346
FblI	GTMKAC	3 cut(s)	195, 222, 657
Fnu4HI	GCNGC	5 cut(s)	65, 466, 542, 888, 950
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	5 cut(s)	65, 466, 542, 888, 950
FspBI	CTAG	3 cut(s)	6, 812, 957
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	5 cut(s)	65, 466, 542, 888, 950
GsuI	CTGGAG	3 cut(s)	546, 732, 1088
HaeIII	GGCC	3 cut(s)	37, 989, 1023
HapII	CCGG	4 cut(s)	206, 453, 990, 1020
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	4 cut(s)	102, 229, 254, 473
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	3 cut(s)	254, 438, 485
HpaII	CCGG	4 cut(s)	206, 453, 990, 1020
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	7 cut(s)	196, 223, 366, 475, 658, 756, 833
Hpy188I	TCNGA	3 cut(s)	22, 710, 769
Hpy188III	TCNNGA	5 cut(s)	289, 339, 563, 669, 932
Hpy8I	GTNNAC	7 cut(s)	196, 223, 366, 475, 658, 756, 833
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	4 cut(s)	295, 512, 641, 872
HpyCH4III	ACNGT	3 cut(s)	220, 298, 336
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	3 cut(s)	322, 465, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	770, 1063
HpyF3I	CTNAG	6 cut(s)	71, 185, 190, 545, 984, 1043
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	4 cut(s)	102, 229, 254, 473
HspAI	GCGC	1 cut(s)	152
Kzo9I	GATC	4 cut(s)	235, 411, 671, 838
LmnI	GCTCC	1 cut(s)	1032
Lsp1109I	GCAGC	4 cut(s)	477, 553, 874, 936
LweI	GCATC	2 cut(s)	760, 773
MaeI	CTAG	3 cut(s)	6, 812, 957
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	3 cut(s)	691, 892, 1007
MalI	GATC	4 cut(s)	237, 413, 673, 840
MboI	GATC	4 cut(s)	235, 411, 671, 838
MboII	GAAGA	9 cut(s)	292, 304, 406, 508, 697, 742, 797, 887, 932
MflI	RGATCY	2 cut(s)	235, 838
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	7 cut(s)	380, 407, 607, 776, 855, 944, 1073
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	5 cut(s)	399, 540, 607, 754, 1063
MseI	TTAA	1 cut(s)	824
MspA1I	CMGCKG	2 cut(s)	544, 677
MspI	CCGG	4 cut(s)	206, 453, 990, 1020
MspR9I	CCNGG	3 cut(s)	206, 454, 1020
MwoI	GCNNNNNNNGC	2 cut(s)	770, 1063
NciI	CCSGG	3 cut(s)	206, 454, 1020
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	4 cut(s)	235, 411, 671, 838
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	102, 229, 254, 473
NlaIV	GGNNCC	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	438, 485
PkrI	GCNGC	5 cut(s)	66, 467, 543, 889, 951
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	341
PstI	CTGCAG	1 cut(s)	467
PsuI	RGATCY	2 cut(s)	235, 838
PvuII	CAGCTG	2 cut(s)	544, 677
RsaI	GTAC	4 cut(s)	161, 424, 626, 701
RsaNI	GTAC	4 cut(s)	160, 423, 625, 700
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	824
SatI	GCNGC	5 cut(s)	65, 466, 542, 888, 950
Sau3AI	GATC	4 cut(s)	235, 411, 671, 838
Sau96I	GGNCC	1 cut(s)	341
ScaI	AGTACT	2 cut(s)	161, 626
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	3 cut(s)	206, 454, 1020
SduI	GDGCHC	1 cut(s)	77
SfaNI	GCATC	2 cut(s)	760, 773
SfcI	CTRYAG	2 cut(s)	463, 513
SinI	GGWCC	1 cut(s)	341
Sse9I	AATT	7 cut(s)	380, 407, 607, 776, 855, 944, 1073
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	3 cut(s)	6, 812, 957
StyD4I	CCNGG	3 cut(s)	204, 452, 1018
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	3 cut(s)	220, 298, 336
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	2 cut(s)	222, 719
TasI	AATT	7 cut(s)	380, 407, 607, 776, 855, 944, 1073
TatI	WGTACW	2 cut(s)	159, 624
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	438, 485
Tru1I	TTAA	1 cut(s)	824
Tru9I	TTAA	1 cut(s)	824
TscAI	CASTG	3 cut(s)	424, 756, 910
TseI	GCWGC	4 cut(s)	465, 541, 887, 949
TspDTI	ATGAA	4 cut(s)	363, 373, 392, 1065
TspRI	CASTG	3 cut(s)	424, 756, 910
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	3 cut(s)	380, 776, 1073
XmiI	GTMKAC	3 cut(s)	195, 222, 657
XspI	CTAG	3 cut(s)	6, 812, 957
ZrmI	AGTACT	2 cut(s)	161, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.