Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013619.1

Orthogroup ID

OG0002261

Physical Location & Seq

Genomic Coordinates Reverse (-)

10445 .. 10843

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013619.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atggccgatacagaaccaagtctgtatggactgtacatgatttccaatacacttgctttcctttcatcactgagcataattctattacttgtgagtggattgcctatgaagcggcgcagatggatgtggattcagatggtgatcatgtgggttgcaatcacagcgctaacagctacgtattttcttggactgatatttatgacaccacaacagcagaaggggggttacctgtatcatgtgacccaagtttctgtgcttgtatggatggcactgatggggctcgtgtttatcggtaatgttgttcgggcagcaagatggctacttagaaagtatggatgcatgaagaagaaacctagagatgattcgctttatgaagattatgacattgatgacctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

132

Amino Acids

15.28

Weight (kDa)

9.3

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08140 FvH4_2g31310 FvH4_2g31340
malus_domestica	MD02G1085900.v1.1 MD08G1068900.v1.1 MD15G1053400.v1.1 MD15G1213100.v1.1
prunus_persica	Prupe.1G407000_v2.0.a1 Prupe.7G203800_v2.0.a1
pyrus_communis	pycom02g06910 pycom08g05680 pycom15g05070 pycom15g18950
rosa_chinensis	RchiOBHm_Chr2g0094191 RchiOBHm_Chr2g0094201 RchiOBHm_Chr6g0311481
rosa_laevigata	RLG00000010402 RLG00000016464 RLG00000016465
rosa_multiflora	Rmu_sc0002193.1_g000004 Rmu_sc0002193.1_g000006 Rmu_sc0006915.1_g000013 Rmu_sc0013176.1_g000001 Rmu_sc0013619.1_g000007 Rmu_sc0015790.1_g000005
rosa_roxburghii	Rroxscaffold_2G00147390 Rroxscaffold_2G00147400 Rroxscaffold_7G00157580
rosa_rugosa	Rorug02G0041700 Rorug02G0041700 Rorug06G0389300
rosa_samantha	Rh2AG089400 Rh2AG089500 Rh2BG089500 Rh2BG089600 Rh2CG092000 Rh2CG092100 Rh2DG088500 Rh6AG503800 Rh6BG514400 Rh6CG520200 Rh6DG506300
rosa_wichuraiana	Rw6G043880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	35
AfeI	AGCGCT	1 cut(s)	165
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Aor51HI	AGCGCT	1 cut(s)	165
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	308
AspLEI	GCGC	2 cut(s)	117, 166
AsuHPI	GGTGA	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	209, 241
BauI	CACGAG	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	5 cut(s)	114, 130, 259, 268, 309
BclI	TGATCA	1 cut(s)	141
BfaI	CTAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	167
BisI	GCNGC	2 cut(s)	113, 309
BlsI	GCNGC	2 cut(s)	114, 310
BmsI	GCATC	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	140
BseGI	GGATG	3 cut(s)	129, 270, 341
BseJI	GATNNNNATC	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	320
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp1407I	TGTACA	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	63
BsrGI	TGTACA	1 cut(s)	33
BssMI	GATC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	33
BstAUI	TGTACA	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	71, 323
BstEII	GGTNACC	1 cut(s)	224
BstF5I	GGATG	3 cut(s)	129, 270, 341
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	2 cut(s)	117, 166
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 161, 170
BstPI	GGTNACC	1 cut(s)	224
BstSNI	TACGTA	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	320
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	3 cut(s)	129, 270, 341
BtsIMutI	CAGTG	2 cut(s)	68, 269
CfoI	GCGC	2 cut(s)	117, 166
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	4 cut(s)	37, 145, 236, 340
CviJI	RGCY	4 cut(s)	5, 173, 280, 319
CviKI_1	RGCY	4 cut(s)	5, 173, 280, 319
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	71, 323
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	3
Eco105I	TACGTA	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	282
Eco47III	AGCGCT	1 cut(s)	165
Eco91I	GGTNACC	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	224
EcoT22I	ATGCAT	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	282
FaeI	CATG	4 cut(s)	40, 148, 239, 343
FatI	CATG	4 cut(s)	36, 144, 235, 339
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	113, 309
FokI	GGATG	3 cut(s)	136, 277, 348
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	2 cut(s)	113, 309
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	2 cut(s)	116, 165
GluI	GCNGC	2 cut(s)	113, 309
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	2 cut(s)	117, 166
Hin1II	CATG	4 cut(s)	40, 148, 239, 343
Hin6I	GCGC	2 cut(s)	115, 164
HinP1I	GCGC	2 cut(s)	115, 164
HinfI	GANTC	2 cut(s)	130, 362
HphI	GGTGA	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	155, 339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 161, 170
HpyF3I	CTNAG	2 cut(s)	71, 323
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	4 cut(s)	40, 148, 239, 343
HspAI	GCGC	2 cut(s)	115, 164
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	141
LpnPI	CCDG	1 cut(s)	242
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	224, 238
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	3 cut(s)	355, 358, 386
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	1 cut(s)	78
Mph1103I	ATGCAT	1 cut(s)	341
MwoI	GCNNNNNNNGC	3 cut(s)	109, 161, 170
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	4 cut(s)	40, 148, 239, 343
NmuCI	GTSAC	1 cut(s)	238
NsiI	ATGCAT	1 cut(s)	341
PfeI	GAWTC	2 cut(s)	130, 362
PkrI	GCNGC	2 cut(s)	114, 310
Ppu21I	YACGTR	1 cut(s)	177
PspEI	GGTNACC	1 cut(s)	224
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SatI	GCNGC	2 cut(s)	113, 309
Sau3AI	GATC	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	5 cut(s)	175, 179, 231, 355, 396
SfaNI	GCATC	1 cut(s)	326
SnaBI	TACGTA	1 cut(s)	177
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	1 cut(s)	179
TasI	AATT	1 cut(s)	78
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	2 cut(s)	130, 362
TscAI	CASTG	2 cut(s)	75, 276
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	4 cut(s)	54, 122, 356, 387
TspRI	CASTG	2 cut(s)	75, 276
XspI	CTAG	1 cut(s)	354
Zsp2I	ATGCAT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.