Rorug06G0389300

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002261
Physical Location & Seq
Reverse (-)
53368777 .. 53373333
4557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0389300.1

Sequence Viewer

Length: 474 bp
ATGCATGGGAGCAGAGGTTGTCTTGGAAGCTGTAGCCAACCCAGATTTACTGTGGTAGATGAGCCATCAAGCGGACTGAGAATTCAAGGTCAAACAGTGAGGAAAAACAGCATGTCAGAGGATTTCTGGAGCACTAGCACTATTGAAATGGATAACAGTGCGATTCAGTCTCAGATAAGCATCTCATCAATTAGCACTTCAAACAATCCCCTTGACGCCCGTGGTGCGGGCAGCACAAGCAATACTCCTGAATTTGTAAATCACGGTCTCTTACTCTGGAACCAGACAAGACAGCAGTGGCGTGGAAATAAAACGTCTCGACCCCAGACACAACTTCGAGAACCTACAATAAGTTGGAATGCAACTTATGAGAGCTTACTTAGTACCAACAAGCCCTTTCGCCAGCCAATCCCTCTTCCTGAAATGATCGATTTTCTTGTTGATATATGGGAGCAAGAGGGTTTGTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

157

Amino Acids

17.65

Weight (kDa)

5.37

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
clamp_Gag1-like PF13259 47 - 157 4.5e-25 Gag1-like, clamp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 72, 227
AcsI RAATTY 2 cut(s) 81, 251
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 1 cut(s) 385
AfiI CCNNNNNNNGG 2 cut(s) 71, 226
AgsI TTSAA 3 cut(s) 86, 146, 201
AluBI AGCT 2 cut(s) 30, 375
AluI AGCT 2 cut(s) 30, 375
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 3 cut(s) 174, 272, 321
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 2 cut(s) 81, 251
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 243
BccI CCATC 1 cut(s) 73
BcoDI GTCTC 3 cut(s) 174, 272, 321
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 31
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 281
BmsI GCATC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 148
Bsa29I ATCGAT 1 cut(s) 429
BsaBI GATNNNNATC 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 220
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 226
Bse8I GATNNNNATC 1 cut(s) 179
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 220
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 2 cut(s) 71, 226
BseMII CTCAG 2 cut(s) 68, 185
BseXI GCAGC 1 cut(s) 243
BshVI ATCGAT 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 71, 226
BsmAI GTCTC 3 cut(s) 174, 272, 321
BsmBI CGTCTC 1 cut(s) 321
BsmI GAATGC 1 cut(s) 364
Bso31I GGTCTC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 426
BspACI CCGC 2 cut(s) 72, 227
BspCNI CTCAG 2 cut(s) 69, 184
BspDI ATCGAT 1 cut(s) 429
BspLI GGNNCC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 426
BssNI GRCGYC 1 cut(s) 216
Bst4CI ACNGT 4 cut(s) 52, 97, 158, 266
Bst6I CTCTTC 1 cut(s) 420
BstACI GRCGYC 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 229, 404
BstDEI CTNAG 3 cut(s) 77, 171, 380
BstDSI CCRYGG 1 cut(s) 220
BstKTI GATC 1 cut(s) 429
BstMAI GTCTC 3 cut(s) 174, 272, 321
BstMBI GATC 1 cut(s) 426
BstMWI GCNNNNNNNGC 2 cut(s) 224, 237
BstNSI RCATGY 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 243
Bsu15I ATCGAT 1 cut(s) 429
BsuTUI ATCGAT 1 cut(s) 429
BtgI CCRYGG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 302
BtsIMutI CAGTG 3 cut(s) 102, 163, 302
Cac8I GCNNGC 2 cut(s) 229, 404
ClaI ATCGAT 1 cut(s) 429
CseI GACGC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 384
CviAII CATG 2 cut(s) 5, 112
CviJI RGCY 6 cut(s) 30, 36, 64, 375, 394, 406
CviKI_1 RGCY 6 cut(s) 30, 36, 64, 375, 394, 406
CviQI GTAC 1 cut(s) 384
DdeI CTNAG 3 cut(s) 77, 171, 380
DpnI GATC 1 cut(s) 428
DpnII GATC 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
Eco31I GGTCTC 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 321
FaeI CATG 2 cut(s) 8, 115
FaiI YATR 6 cut(s) 6, 113, 369, 446, 448, 468
FatI CATG 2 cut(s) 4, 111
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 1 cut(s) 135
GluI GCNGC 1 cut(s) 232
GsuI CTGGAG 1 cut(s) 148
HgaI GACGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 2 cut(s) 8, 115
HinfI GANTC 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 118, 174
Hpy188III TCNNGA 6 cut(s) 127, 248, 277, 318, 338, 419
HpyCH4III ACNGT 4 cut(s) 52, 97, 158, 266
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 2 cut(s) 4, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 237
HpyF3I CTNAG 3 cut(s) 77, 171, 380
HpySE526I ACGT 1 cut(s) 314
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 2 cut(s) 8, 115
Kzo9I GATC 1 cut(s) 426
LmnI GCTCC 3 cut(s) 9, 129, 451
LpnPI CCDG 8 cut(s) 55, 112, 261, 262, 296, 338, 416, 432
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 1 cut(s) 189
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 314
MalI GATC 1 cut(s) 428
MboI GATC 1 cut(s) 426
MboII GAAGA 1 cut(s) 407
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 3 cut(s) 81, 189, 251
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 5 cut(s) 8, 93, 112, 423, 451
Mph1103I ATGCAT 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 364
MwoI GCNNNNNNNGC 2 cut(s) 224, 237
NdeII GATC 1 cut(s) 426
NlaIII CATG 2 cut(s) 8, 115
NlaIV GGNNCC 1 cut(s) 281
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 115
PctI GAATGC 1 cut(s) 364
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 281
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 1 cut(s) 426
SduI GDGCHC 1 cut(s) 134
SetI ASST 6 cut(s) 19, 32, 91, 317, 346, 377
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 1 cut(s) 31
Sse9I AATT 3 cut(s) 81, 189, 251
SsiI CCGC 2 cut(s) 72, 227
SspMI CTAG 1 cut(s) 135
TaaI ACNGT 4 cut(s) 52, 97, 158, 266
TaiI ACGT 1 cut(s) 317
TaqI TCGA 3 cut(s) 319, 337, 429
TasI AATT 3 cut(s) 81, 189, 251
TfiI GAWTC 1 cut(s) 163
TscAI CASTG 3 cut(s) 102, 163, 302
TseI GCWGC 1 cut(s) 231
TspRI CASTG 3 cut(s) 102, 163, 302
XapI RAATTY 2 cut(s) 81, 251
XceI RCATGY 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XspI CTAG 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.