Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002261

Physical Location & Seq

Genomic Coordinates Forward (+)

24031420 .. 24032553

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAAGGCATGGGAAACTTGCTGTATGAGGGAGCATTAGAAGGCAATCTGACAACCCTAACAGATTTGCTCAACCAAGATAGACTAGCCCTTGACAGGTTCGTCGTCACTAGTTTTTCCGAGACGCCTCTCCACGTAGCAGCCATGCTTGGCCACCTCGATTTCGATAAGGAGATTTTGCGCCGGAAACCTGAACTTGCACAAGAGCTGGATTTGAAACGATCCTCGCCTCTTCACTTGGCATCGGCAAAAGGGTATCTGGGAACGGTGAAAGAGTTGCTGAGGGTTAACCCTGACATGAAACCCTATCCACCTTGCTGCCATGAAAGGCCGGATTGGAGTGTTGAGGGATTTCTGAATGCTAAGGATGACTATGGAATGACCATCTTGCACCTGGCAGTTGGTGACAAACAGATTGAGACAGTAAGGTTTTTGCTTCTGAATGGTAGAGCGGAGGTGAATGCTGTAAATGCAAACGGCTTCACAGCACTCGACGTCCTAGCACAAAGTCGTAGAGATGTGAAAGATTTCGATATTTCAGAGTGCCTCCGAAGAGCTGGAGCCTTAAGAACTGGTCCAGATAGAAGCACCAGCAATAACCACATCATGATGAACTTGCTCTCATCACACAGAACTGCTCTTATTAATTTGTTAAATCTCACGTTTGATACTCATGACTGCATTAGAAATTCTTATTTTTTAAGACTATACTGCACTCATGTGCGCTGCCTTAAATTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

248

Amino Acids

27.92

Weight (kDa)

6.5

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	12 - 97	1.2e-07	Ankyrin repeats (3 copies)
Ank_5	PF13857	119 - 166	2.2e-06	Ankyrin repeats (many copies)
Ank_2	PF12796	120 - 172	4.2e-06	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08140 FvH4_2g31310 FvH4_2g31340
malus_domestica	MD02G1085900.v1.1 MD08G1068900.v1.1 MD15G1053400.v1.1 MD15G1213100.v1.1
prunus_persica	Prupe.1G407000_v2.0.a1 Prupe.7G203800_v2.0.a1
pyrus_communis	pycom02g06910 pycom08g05680 pycom15g05070 pycom15g18950
rosa_chinensis	RchiOBHm_Chr2g0094191 RchiOBHm_Chr2g0094201 RchiOBHm_Chr6g0311481
rosa_laevigata	RLG00000010402 RLG00000016464 RLG00000016465
rosa_multiflora	Rmu_sc0002193.1_g000004 Rmu_sc0002193.1_g000006 Rmu_sc0006915.1_g000013 Rmu_sc0013176.1_g000001 Rmu_sc0013619.1_g000007 Rmu_sc0015790.1_g000005
rosa_roxburghii	Rroxscaffold_2G00147390 Rroxscaffold_2G00147400 Rroxscaffold_7G00157580
rosa_rugosa	Rorug02G0041700 Rorug02G0041700 Rorug06G0389300
rosa_samantha	Rh2AG089400 Rh2AG089500 Rh2BG089500 Rh2BG089600 Rh2CG092000 Rh2CG092100 Rh2DG088500 Rh6AG503800 Rh6BG514400 Rh6CG520200 Rh6DG506300
rosa_wichuraiana	Rw6G043880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AatII	GACGTC	1 cut(s)	498
AccBSI	CCGCTC	1 cut(s)	452
AciI	CCGC	1 cut(s)	452
AclWI	GGATC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	688
AcyI	GRCGYC	2 cut(s)	125, 495
AfaI	GTAC	1 cut(s)	740
AfiI	CCNNNNNNNGG	1 cut(s)	96
AflII	CTTAAG	1 cut(s)	565
AgsI	TTSAA	1 cut(s)	217
AhlI	ACTAGT	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	393
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	2 cut(s)	208, 557
AluI	AGCT	2 cut(s)	208, 557
Alw26I	GTCTC	2 cut(s)	116, 413
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	2 cut(s)	151, 329
ApeKI	GCWGC	3 cut(s)	140, 318, 726
ApoI	RAATTY	1 cut(s)	688
AseI	ATTAAT	1 cut(s)	645
Asp700I	GAANNNNTTC	1 cut(s)	527
AspLEI	GCGC	2 cut(s)	183, 726
AspS9I	GGNCC	1 cut(s)	575
AsuHPI	GGTGA	3 cut(s)	280, 416, 469
AvaII	GGWCC	1 cut(s)	575
BalI	TGGCCA	1 cut(s)	153
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	3 cut(s)	152, 305, 713
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	1 cut(s)	493
BciT130I	CCWGG	1 cut(s)	395
BcoDI	GTCTC	2 cut(s)	116, 413
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	3 cut(s)	86, 111, 500
BfrI	CTTAAG	1 cut(s)	565
BisI	GCNGC	3 cut(s)	141, 319, 727
BlsI	GCNGC	3 cut(s)	142, 320, 728
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	1 cut(s)	395
BmsI	GCATC	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	2 cut(s)	281, 363
BsaAI	YACGTR	1 cut(s)	136
BsaHI	GRCGYC	2 cut(s)	125, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	577
BseBI	CCWGG	1 cut(s)	395
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	577
BseXI	GCAGC	3 cut(s)	152, 305, 713
BsgI	GTGCAG	1 cut(s)	697
BshFI	GGCC	2 cut(s)	153, 331
BsiSI	CCGG	2 cut(s)	184, 332
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	2 cut(s)	116, 413
BsmBI	CGTCTC	1 cut(s)	116
BsmI	GAATGC	2 cut(s)	364, 466
BsnI	GGCC	2 cut(s)	153, 331
Bsp143I	GATC	1 cut(s)	221
BspACI	CCGC	1 cut(s)	452
BspANI	GGCC	2 cut(s)	153, 331
BspCNI	CTCAG	1 cut(s)	273
BspHI	TCATGA	2 cut(s)	606, 673
BspLI	GGNNCC	1 cut(s)	562
BspPI	GGATC	1 cut(s)	216
BspQI	GCTCTTC	1 cut(s)	547
BspTI	CTTAAG	1 cut(s)	565
BsrBI	CCGCTC	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	577
BssMI	GATC	1 cut(s)	221
BssNI	GRCGYC	2 cut(s)	125, 495
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	2 cut(s)	268, 424
Bst6I	CTCTTC	2 cut(s)	237, 547
BstACI	GRCGYC	2 cut(s)	125, 495
BstAFI	CTTAAG	1 cut(s)	565
BstBAI	YACGTR	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	281, 363
BstF5I	GGATG	1 cut(s)	373
BstHHI	GCGC	2 cut(s)	183, 726
BstKTI	GATC	1 cut(s)	224
BstMAI	GTCTC	2 cut(s)	116, 413
BstMBI	GATC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BstV1I	GCAGC	3 cut(s)	152, 305, 713
BsuRI	GGCC	2 cut(s)	153, 331
BtsCI	GGATG	1 cut(s)	373
CciI	TCATGA	2 cut(s)	606, 673
CfoI	GCGC	2 cut(s)	183, 726
Cfr13I	GGNCC	1 cut(s)	575
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	739
CviAII	CATG	7 cut(s)	10, 145, 298, 323, 607, 674, 719
CviJI	RGCY	8 cut(s)	89, 143, 153, 208, 331, 480, 557, 563
CviKI_1	RGCY	8 cut(s)	89, 143, 153, 208, 331, 480, 557, 563
CviQI	GTAC	1 cut(s)	739
DdeI	CTNAG	2 cut(s)	281, 363
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	151
Eam1104I	CTCTTC	2 cut(s)	237, 547
EarI	CTCTTC	2 cut(s)	237, 547
Eco47I	GGWCC	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	7 cut(s)	13, 148, 301, 326, 610, 677, 722
FatI	CATG	7 cut(s)	9, 144, 297, 322, 606, 673, 718
Fnu4HI	GCNGC	3 cut(s)	141, 319, 727
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	3 cut(s)	141, 319, 727
FspBI	CTAG	3 cut(s)	86, 111, 500
GlaI	GCGC	2 cut(s)	182, 725
GluI	GCNGC	3 cut(s)	141, 319, 727
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	2 cut(s)	153, 331
HapII	CCGG	2 cut(s)	184, 332
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	2 cut(s)	183, 726
Hin1I	GRCGYC	2 cut(s)	125, 495
Hin1II	CATG	7 cut(s)	13, 148, 301, 326, 610, 677, 722
Hin6I	GCGC	2 cut(s)	181, 724
HinP1I	GCGC	2 cut(s)	181, 724
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HpaI	GTTAAC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	184, 332
HphI	GGTGA	3 cut(s)	280, 416, 469
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	6 cut(s)	51, 121, 357, 441, 541, 551
Hpy188III	TCNNGA	3 cut(s)	578, 607, 674
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	2 cut(s)	107, 497
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	2 cut(s)	268, 424
HpyCH4IV	ACGT	3 cut(s)	135, 495, 662
HpyCH4V	TGCA	5 cut(s)	200, 391, 473, 681, 714
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	2 cut(s)	281, 363
HpySE526I	ACGT	3 cut(s)	135, 495, 662
Hsp92I	GRCGYC	2 cut(s)	125, 495
Hsp92II	CATG	7 cut(s)	13, 148, 301, 326, 610, 677, 722
HspAI	GCGC	2 cut(s)	181, 724
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	221
LguI	GCTCTTC	1 cut(s)	547
LmnI	GCTCC	2 cut(s)	32, 560
Lsp1109I	GCAGC	3 cut(s)	152, 305, 713
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	3 cut(s)	86, 111, 500
MaeII	ACGT	3 cut(s)	135, 495, 662
MaeIII	GTNAC	2 cut(s)	106, 404
MalI	GATC	1 cut(s)	223
MbiI	CCGCTC	1 cut(s)	452
MboI	GATC	1 cut(s)	221
MboII	GAAGA	2 cut(s)	224, 564
MlsI	TGGCCA	1 cut(s)	153
MluCI	AATT	3 cut(s)	646, 688, 734
MluNI	TGGCCA	1 cut(s)	153
MnlI	CCTC	9 cut(s)	22, 138, 167, 235, 240, 276, 340, 448, 557
Mox20I	TGGCCA	1 cut(s)	153
MroXI	GAANNNNTTC	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	153
MseI	TTAA	6 cut(s)	288, 566, 645, 653, 701, 732
MslI	CAYNNNNRTG	2 cut(s)	608, 719
Msp20I	TGGCCA	1 cut(s)	153
MspCI	CTTAAG	1 cut(s)	565
MspI	CCGG	2 cut(s)	184, 332
MspR9I	CCNGG	1 cut(s)	395
Mva1269I	GAATGC	2 cut(s)	364, 466
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	470
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	7 cut(s)	13, 148, 301, 326, 610, 677, 722
NlaIV	GGNNCC	1 cut(s)	562
NmuCI	GTSAC	2 cut(s)	106, 404
OliI	CACNNNNGTG	1 cut(s)	719
PagI	TCATGA	2 cut(s)	606, 673
PciSI	GCTCTTC	1 cut(s)	547
PctI	GAATGC	2 cut(s)	364, 466
PdmI	GAANNNNTTC	1 cut(s)	527
PkrI	GCNGC	3 cut(s)	142, 320, 728
Ppu21I	YACGTR	1 cut(s)	136
PshBI	ATTAAT	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	562
PspPI	GGNCC	1 cut(s)	575
RsaI	GTAC	1 cut(s)	740
RsaNI	GTAC	1 cut(s)	739
RseI	CAYNNNNRTG	2 cut(s)	608, 719
SapI	GCTCTTC	1 cut(s)	547
SaqAI	TTAA	6 cut(s)	288, 566, 645, 653, 701, 732
SatI	GCNGC	3 cut(s)	141, 319, 727
Sau3AI	GATC	1 cut(s)	221
Sau96I	GGNCC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	395
SfaNI	GCATC	1 cut(s)	251
SinI	GGWCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	2 cut(s)	608, 719
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
SpeI	ACTAGT	1 cut(s)	110
Sse9I	AATT	3 cut(s)	646, 688, 734
SsiI	CCGC	1 cut(s)	452
SspMI	CTAG	3 cut(s)	86, 111, 500
StyD4I	CCNGG	1 cut(s)	393
TaaI	ACNGT	2 cut(s)	268, 424
TaiI	ACGT	3 cut(s)	138, 498, 665
TaqI	TCGA	4 cut(s)	159, 165, 492, 531
TasI	AATT	3 cut(s)	646, 688, 734
TatI	WGTACW	1 cut(s)	738
Tru1I	TTAA	6 cut(s)	288, 566, 645, 653, 701, 732
Tru9I	TTAA	6 cut(s)	288, 566, 645, 653, 701, 732
TseFI	GTSAC	2 cut(s)	106, 404
TseI	GCWGC	3 cut(s)	140, 318, 726
Tsp45I	GTSAC	2 cut(s)	106, 404
TspDTI	ATGAA	3 cut(s)	314, 339, 626
Vha464I	CTTAAG	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	575
VspI	ATTAAT	1 cut(s)	645
XapI	RAATTY	1 cut(s)	688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	3 cut(s)	86, 111, 500
ZraI	GACGTC	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.