Rw6G043880

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002261
Physical Location & Seq
Reverse (-)
67023317 .. 67026102
2786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G043880.1

Sequence Viewer

Length: 672 bp
ATGTTTGATCAAGATACAGTGCAAGTTCCTAGCACAATGCAGCCACTGATGTCAAAGAGGAGGAGTTTAAGGCAACTAGTATTTAAGCCAAAGCAGAAAGAAGTTGATTGGTTGGGTAGGAAACGAAGTTCATTAATGGTTGTGGCTTCACTAATTGCTACAGTGGCATTTCAGTCTGCAATAAACCCGCCAGGTGGTGTTTGGCAGTCGGACTATCTGGAAGATAGCAATGGCAACCCTGTGGATAAACCACACCATGCTGGGCAGTCAGTGATGGCCGATACAGAACCAAGTCTGTATGGACTGTACATGATTTCCAATACACTTGCTTTCCTTTCATCACTGAGCATAATTCTATTACTTGTGAGTGGATTGCCTATGAAGCGGCGCAGATGGATGTGGATTCAGATGGTGATCATGTGGGTTGCAATCACAGCGCTAACAGCTACATATTTTCTTGGACTGATATTTATGACACCACAACAGCAGAAGGGGGGTTACCTGTATCATGTGACCCAAGTTTCTGTGCTTGTATGGATGGCACTGATGGGGCTCGTGTTTATCGGTAATGTTGTTCGGGCAGCAAGATGGCTACTTAGAAAGTATGGATGCATGAAGAAGAAACCTAGAGATGATTCGCTTTATGAAGATTATGACATTGATGACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

223

Amino Acids

25.43

Weight (kDa)

9.52

Isoelectric Point (pI)

58.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 36 - 157 6.4e-28 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 188, 385
AcoI YGGCCR 1 cut(s) 276
AfaI GTAC 1 cut(s) 308
AfeI AGCGCT 1 cut(s) 438
AfiI CCNNNNNNNGG 1 cut(s) 194
AhlI ACTAGT 1 cut(s) 76
AjnI CCWGG 1 cut(s) 190
AloI GAACNNNNNNTCC 2 cut(s) 112, 144
AluBI AGCT 1 cut(s) 446
AluI AGCT 1 cut(s) 446
AlwNI CAGNNNCTG 1 cut(s) 46
Aor51HI AGCGCT 1 cut(s) 438
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 2 cut(s) 40, 581
AseI ATTAAT 1 cut(s) 134
AspLEI GCGC 2 cut(s) 390, 439
AsuHPI GGTGA 1 cut(s) 424
BanII GRGCYC 1 cut(s) 555
BarI GAAGNNNNNNTAC 2 cut(s) 482, 514
BauI CACGAG 1 cut(s) 554
BbvI GCAGC 2 cut(s) 52, 593
BccI CCATC 6 cut(s) 268, 387, 403, 532, 541, 582
BciT130I CCWGG 1 cut(s) 192
BclI TGATCA 2 cut(s) 7, 414
BcuI ACTAGT 1 cut(s) 76
BfaI CTAG 3 cut(s) 30, 77, 627
BfmI CTRYAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 440
BisI GCNGC 3 cut(s) 41, 386, 582
BlsI GCNGC 3 cut(s) 42, 387, 583
Bme1390I CCNGG 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 1 cut(s) 599
BsaBI GATNNNNATC 1 cut(s) 413
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 235
Bse8I GATNNNNATC 1 cut(s) 413
BseBI CCWGG 1 cut(s) 192
BseGI GGATG 3 cut(s) 402, 543, 614
BseJI GATNNNNATC 1 cut(s) 413
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 335
BseRI GAGGAG 2 cut(s) 73, 76
BseXI GCAGC 2 cut(s) 52, 593
BseYI CCCAGC 1 cut(s) 260
BshFI GGCC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 194
BsnI GGCC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 555
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 2 cut(s) 7, 414
BspACI CCGC 2 cut(s) 188, 385
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 235
BsrGI TGTACA 1 cut(s) 306
BssMI GATC 2 cut(s) 7, 414
BssSI CACGAG 1 cut(s) 554
Bst2BI CACGAG 1 cut(s) 554
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 3 cut(s) 19, 163, 306
BstAUI TGTACA 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 344, 596
BstEII GGTNACC 1 cut(s) 497
BstF5I GGATG 3 cut(s) 402, 543, 614
BstH2I RGCGCY 1 cut(s) 440
BstHHI GCGC 2 cut(s) 390, 439
BstKTI GATC 2 cut(s) 10, 417
BstMBI GATC 2 cut(s) 7, 414
BstMWI GCNNNNNNNGC 4 cut(s) 164, 382, 434, 443
BstNI CCWGG 1 cut(s) 192
BstPI GGTNACC 1 cut(s) 497
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 52, 593
BsuRI GGCC 1 cut(s) 278
BtsCI GGATG 3 cut(s) 402, 543, 614
BtsIMutI CAGTG 6 cut(s) 24, 44, 168, 276, 341, 542
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 2 cut(s) 390, 439
Csp6I GTAC 1 cut(s) 307
CviAII CATG 5 cut(s) 257, 310, 418, 509, 613
CviJI RGCY 7 cut(s) 43, 88, 146, 278, 446, 553, 592
CviKI_1 RGCY 7 cut(s) 43, 88, 146, 278, 446, 553, 592
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 2 cut(s) 344, 596
DpnI GATC 2 cut(s) 9, 416
DpnII GATC 2 cut(s) 7, 414
EaeI YGGCCR 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 555
Eco47III AGCGCT 1 cut(s) 438
Eco91I GGTNACC 1 cut(s) 497
EcoO65I GGTNACC 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 190
EcoT22I ATGCAT 1 cut(s) 614
EcoT38I GRGCYC 1 cut(s) 555
FaeI CATG 5 cut(s) 260, 313, 421, 512, 616
FatI CATG 5 cut(s) 256, 309, 417, 508, 612
FauI CCCGC 1 cut(s) 195
FbaI TGATCA 2 cut(s) 7, 414
Fnu4HI GCNGC 3 cut(s) 41, 386, 582
FokI GGATG 3 cut(s) 409, 550, 621
FriOI GRGCYC 1 cut(s) 555
Fsp4HI GCNGC 3 cut(s) 41, 386, 582
FspBI CTAG 3 cut(s) 30, 77, 627
GlaI GCGC 2 cut(s) 389, 438
GluI GCNGC 3 cut(s) 41, 386, 582
GsaI CCCAGC 1 cut(s) 264
HaeII RGCGCY 1 cut(s) 440
HaeIII GGCC 1 cut(s) 278
HhaI GCGC 2 cut(s) 390, 439
Hin1II CATG 5 cut(s) 260, 313, 421, 512, 616
Hin6I GCGC 2 cut(s) 388, 437
HinP1I GCGC 2 cut(s) 388, 437
HinfI GANTC 2 cut(s) 403, 635
HphI GGTGA 1 cut(s) 424
Hpy188I TCNGA 2 cut(s) 211, 408
Hpy188III TCNNGA 2 cut(s) 11, 218
HpyAV CCTTC 1 cut(s) 484
HpyCH4III ACNGT 3 cut(s) 19, 163, 306
HpyCH4V TGCA 5 cut(s) 22, 40, 179, 428, 612
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 382, 434, 443
HpyF3I CTNAG 2 cut(s) 344, 596
Hsp92II CATG 5 cut(s) 260, 313, 421, 512, 616
HspAI GCGC 2 cut(s) 388, 437
Ksp22I TGATCA 2 cut(s) 7, 414
Kzo9I GATC 2 cut(s) 7, 414
LpnPI CCDG 6 cut(s) 177, 203, 204, 246, 252, 515
Lsp1109I GCAGC 2 cut(s) 52, 593
LweI GCATC 1 cut(s) 599
MaeI CTAG 3 cut(s) 30, 77, 627
MaeIII GTNAC 2 cut(s) 497, 511
MalI GATC 2 cut(s) 9, 416
MboI GATC 2 cut(s) 7, 414
MboII GAAGA 4 cut(s) 233, 628, 631, 659
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 2 cut(s) 153, 351
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 2 cut(s) 51, 54
Mph1103I ATGCAT 1 cut(s) 614
MseI TTAA 3 cut(s) 68, 84, 134
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 4 cut(s) 164, 382, 434, 443
NdeII GATC 2 cut(s) 7, 414
NlaIII CATG 5 cut(s) 260, 313, 421, 512, 616
NmuCI GTSAC 1 cut(s) 511
NsiI ATGCAT 1 cut(s) 614
PfeI GAWTC 2 cut(s) 403, 635
PkrI GCNGC 3 cut(s) 42, 387, 583
PshBI ATTAAT 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 190
PspEI GGTNACC 1 cut(s) 497
PspFI CCCAGC 1 cut(s) 260
PspGI CCWGG 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 46
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 3 cut(s) 68, 84, 134
SatI GCNGC 3 cut(s) 41, 386, 582
Sau3AI GATC 2 cut(s) 7, 414
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 555
SetI ASST 5 cut(s) 196, 448, 504, 628, 669
SfaNI GCATC 1 cut(s) 599
SfcI CTRYAG 1 cut(s) 159
SpeI ACTAGT 1 cut(s) 76
Sse9I AATT 2 cut(s) 153, 351
SsiI CCGC 2 cut(s) 188, 385
SspMI CTAG 3 cut(s) 30, 77, 627
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 3 cut(s) 19, 163, 306
TasI AATT 2 cut(s) 153, 351
TatI WGTACW 1 cut(s) 306
TauI GCSGC 1 cut(s) 388
TfiI GAWTC 2 cut(s) 403, 635
Tru1I TTAA 3 cut(s) 68, 84, 134
Tru9I TTAA 3 cut(s) 68, 84, 134
TscAI CASTG 6 cut(s) 24, 51, 168, 276, 348, 549
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 2 cut(s) 40, 581
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 5 cut(s) 120, 327, 395, 629, 660
TspRI CASTG 6 cut(s) 24, 51, 168, 276, 348, 549
VspI ATTAAT 1 cut(s) 134
XcmI CCANNNNNNNNNTGG 1 cut(s) 198
XspI CTAG 3 cut(s) 30, 77, 627
Zsp2I ATGCAT 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.