pycom02g07110

RNA polymerase-associated protein CTR9 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0016235
Physical Location & Seq
Forward (+)
4959676 .. 4967480
7805 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3363 bp
ATGGCGTGCGTGTATATACCGGTGCAGAATTCGGAGGAGGAGGTGATGGTGGTTCTGGATCAGCTGCCTAAGGAAGCTACCGATATCATCGACATCCTCAAGGCCGAGCAAGCATCTCTCGATCTCTGGCTCATTATCGCGGTTCGTAATTTTCAGTTGCACGGAGTTTCGATATGTTGGTGTATTAATTTTGAATTGGTAATGCTGCAGAGAGAGTATTTCAAACAAGGAAAGCTTGACCAGTTCCGCCAGATTTTGGAGGAAGGCTCCGGTGCTGGTGGAATAATGTTTGTGGTTATTATGTTCTTTGGTGCAGAAATTGATGAATATTATTCTGATGTTCGTTATGAAAGGATTGCCATCTTGAATGCTTTAGGGGCCTACTACACCTACCTTGGAAAAATTGAGACAAAACAGAGGGAAAAGGAGGAGCATTTTATTTTAGCAACACAATTCTACAACAAAGCATCGAGAATCGATATTCACGAGCCTTCTACTTGGGTTGGGAAAGGGGATACTCATTTGAAATATGACAGACCTAGTTGCCCCAGTGAGAACAAGAGAGACCAAATTGGGACTCGCTTGATTAGTGTAGAAACACTTCATTGTTTTGTGATTTGTAAACAATTTGCCCCTCATATCTGCAGGCATGCGTTGAATTCAATCGTGGGCACTATTCAGATTCATTGGAGCTCTACAAGGGCCCTGCAAGTACATCCTGATTGTCCTGCCGCTGTAAGGCTTGGCATAGGTCTCTGTCGTTACAAAATGGGTCAATTTGATAAAGCTCGGCAGGCCTTTGAACGGGTTCTACAGTTAGATCCAGAAAATGTTGAGGCTCTTGTTGCACTTGCAATTCTGGATTTGCATGCAAATACAGGTACGACTTTGCAAGTCAGCATTTTTATAGTATTCTTAACTCGTTACTGTTTGTTTACTTTGATTGTTATCATGGGCATGCTTCTCTGTTTCAACGAGCAGTCTAACATTGAGGCTATATTATACTTGATAGCTGCTGGAATAAGGAGAGGAATGGAAAAAATGCAAAGAGCTTTTGAGATTTACCCTTATTGTGCAATGGCCTTGAACTATTTGGCAAACCATTTTTTCTACACTGGTCAGCACTTTCTGGTTGAGCAGTTAACGGAAACTGCACTGGCTGTGACCAACCATGGACCGACAAAGTCACATTCCTACTACAACTTGGCGCGATCTTACCATAGCAAGGGTGACTATGATAAGGCTGGAGTGTACTACATGGCATCTGTTAAGGAAATCAGTAAACCCCATGAGTTCGTATTTCCTTATTATGGTTTGGGACAAGTACAACTGAAGATGGGAGATCTTAGAAGTGCACTGTCGAACTTTGAAAGGGTTTTGGAGGTTTATCCTGATAATAGCGACACATTGAAAGTCCTTGGACACATATATGTTCAGCTTGGGCAGACTGAGAAGGCCTTGGAATTTATGAGGAAGGCCACAAAAGTGGACCCAAATGATTCCCAGGCATTTCTTGACCTGGGGGAACTGTTGATTTCATCTGATGCTGGAGCTGCTCTGGATTGCCTAAAAACTGCACATAATCTTTTGAAAAAGGAAGGTCAAGAAGTACCAATTGAAGTTCTTAACAATCTTGGGGTTCTCCATTTTGAGAGGGGAGAATTTGAGCTTGCTCAACAAACTTTCAGGGAGGCACTAGGTGATGGAATATGGTTGGCCTTCATAGATGGTAAAGAAAACCCCCCATCTATTGATGCGAATGCGACTATTTCACAGTACAAGGACATGGGTATATTTCATCATCTTGAGAAAGAAGGTCACTTAGTCGAATTACCTTGGGATAAAGTCACAGCACTATTTAACCTGGCCAGATTACTCGAGCAGTTACATATCACTGAAACTGCAAGCATACTGTACCGTCTCATTTTGTTTAAGTATCCAGACTATGTAGATGCTTATCTGAGACTCGCTGCCCTGGCCAAAGCTCAAAATAACTTTCAACTAAGCATTGAACTGGTTAATGATGCTCTGAAGGTGAATAACAAGTGCCCAAATGCATTATTAATGCTTGGTGACTTGGAATTGAAAAATGATGACTGGGTTAAGGCAAAAGAAACCTTGCGGGCTGCTAGTGAAGCAACTGAAGGGAAGGATTCCTATGCCACCCTATCTCTGGGCAACTGGAACTACTTTGCGGCAATTCGCAATGAGAAGAGAAATCCCAAGTTGGAAGCTACACATCTGGAAAAATCCAAAGAACTCTACACTAAAGTCCTATCTCAACATTCTGCTAATTTGTATGCTGCCAATGGTGCCGGAGTGGTCTTTGCAGAGAAAGGTCACTTTGATGTTTCAAAAGACATTTTTACGCAGGTTCAAGAAGCTGCAAGTGGAAACATTTTTGTTCAGATGCCAGACGTGTGGATAAATTTGGCACATGTTTATTTTGCTCAAGGCAATTTTGCATTGGCTGTGAAAATGTATCAAAACTGCTTGAGGAAGTTCTTTAATAACACGGACTCTCAGATTCTACTCTATTTGGCTCGTACCCATTATGAAGCTGAGCAGTGGCAAGACTGCAAAAAGAGTTTACTGAGAGCCATTCATTTGGCACCTTCAAATTACACGCTAAGGTTTGACGCAGGCGTTGTAATGCAAAAGTTCTCAGCTTCAACGTTACAAAAGCCAAAGAAATCTGTTGATGAGGTGCGATCAACAGTTTCAGAGCTAGAAAATGCTGTTCGTTTATTTAGACAGTTGTCTGCTGCTTCCAGCCTTCACATCCATGGATTTGATGAGAAAAAAATTGATACCCATGTTGAGTATTGTAGTCACTTGCTTGATGCTGCGAGAGTTCACTTCAAAGCAGCTGAGCATGAGGAGCAGAAGATCAAGCACAAACAAGAAGTTGCTCGTCAATTGGCATTGGCTGAGGAGGCCCGTCGTAAGGCTGAAGAACAGAGGAAATTCCAGGAGCAATGGAAGAGCAGTACGCCTGGTTCTAAGCGAAGGGAAAGGTCAGAAATGGATGATGAGGAGGGCGGGCATAGTGAAAAGAGACGGAGAAAGGGTGGAAAGAGGAGAAAGAAGGACAAGCACTCAAGATCACGCTATGAAACGGAGGGAGCAGAAGCTGAGATGATGGATGATCAGGAAGAACCGGAATATGAAGATGCCAACATGAATTACAGGGAGCCCATGGGTCAGATGAACGAGCAGGATGAAGAAGAGAATGTTCAAGATCCTCTTGCAGCAGCTGGGCTTGAAGATTCTGACGCTGAAGAGGAGGTAGTAAATTCTCTTTATAAATCCAAGGATACTAACATATCTTGTCACCACATGACATGGACTGAAAATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000428 GO:0000785 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016020 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035327 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_16 TPR_2 TPR_6 TPR_8

Protein Analysis

1121

Amino Acids

127.85

Weight (kDa)

5.84

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 247 - 277 2.6e-07 Tetratricopeptide repeat
TPR_2 PF07719 249 - 277 2.4e-06 Tetratricopeptide repeat
TPR_12 PF13424 436 - 497 1.5e-07 Tetratricopeptide repeat
TPR_16 PF13432 437 - 500 1.7e-06 Tetratricopeptide repeat
TPR_19 PF14559 444 - 503 1.7e-09 Tetratricopeptide repeat
TPR_CcmH_CycH PF23914 463 - 565 5.2e-08 Cytochrome c-type biogenesis protein H TPR domain
TPR_8 PF13181 473 - 500 5e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08430 FvH4_1g08430
malus_domestica MD02G1088500.v1.1
prunus_persica Prupe.7G201100_v2.0.a1 Prupe.7G201100_v2.0.a1
pyrus_communis pycom02g07110
rosa_chinensis RchiOBHm_Chr2g0094531
rosa_laevigata RLG00000016499
rosa_multiflora Rmu_sc0004359.1_g000042
rosa_roxburghii Rroxscaffold_2G00147090
rosa_rugosa Rorug02G0044500
rosa_samantha Rh2AG092800 Rh2BG093000 Rh2CG095500 Rh2DG091900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3306
Acc36I ACCTGC 1 cut(s) 2362
AccB1I GGYRCC 2 cut(s) 2312, 2611
AccB7I CCANNNNNTGG 1 cut(s) 256
AccII CGCG 2 cut(s) 140, 1210
AciI CCGC 6 cut(s) 140, 247, 732, 2122, 2195, 3042
AclI AACGTT 1 cut(s) 2675
AclWI GGATC 3 cut(s) 66, 815, 3236
AcoI YGGCCR 2 cut(s) 1866, 1977
AcsI RAATTY 7 cut(s) 28, 658, 1463, 1661, 2428, 2966, 3295
AcuI CTGAAG 5 cut(s) 1352, 2051, 2163, 2973, 3300
AdeI CACNNNGTG 1 cut(s) 1700
AfaI GTAC 9 cut(s) 714, 883, 1253, 1326, 1611, 1778, 1916, 2548, 2992
AfiI CCNNNNNNNGG 7 cut(s) 256, 738, 804, 1225, 1310, 2173, 2947
AflIII ACRYGT 2 cut(s) 2418, 2437
AgeI ACCGGT 1 cut(s) 19
AjiI CACGTC 1 cut(s) 2419
AjnI CCWGG 6 cut(s) 1503, 1518, 1863, 1974, 2970, 2995
AleI CACNNNNGTG 1 cut(s) 1484
Alw21I GWGCWC 2 cut(s) 695, 1357
Alw26I GTCTC 6 cut(s) 401, 558, 758, 1925, 1957, 3052
Alw44I GTGCAC 1 cut(s) 1353
AlwI GGATC 3 cut(s) 66, 815, 3236
AlwNI CAGNNNCTG 2 cut(s) 3134, 3257
Ama87I CYCGRG 1 cut(s) 1877
ApaI GGGCCC 1 cut(s) 706
ApaLI GTGCAC 1 cut(s) 1353
ApoI RAATTY 7 cut(s) 28, 658, 1463, 1661, 2428, 2966, 3295
AseI ATTAAT 2 cut(s) 186, 2063
AsiGI ACCGGT 1 cut(s) 19
Asp700I GAANNNNTTC 2 cut(s) 600, 807
AspLEI GCGC 1 cut(s) 1210
AspS9I GGNCC 6 cut(s) 378, 702, 703, 1175, 1489, 2938
AsuHPI GGTGA 6 cut(s) 55, 1241, 1712, 2047, 2084, 3326
AvaI CYCGRG 1 cut(s) 1877
AvaII GGWCC 2 cut(s) 1175, 1489
AxyI CCTNAGG 1 cut(s) 69
BaeGI GKGCMC 4 cut(s) 674, 706, 1357, 2051
BaeI ACNNNNGTAYC 2 cut(s) 2802, 2835
BalI TGGCCA 2 cut(s) 1868, 1979
BanI GGYRCC 2 cut(s) 2312, 2611
BanII GRGCYC 3 cut(s) 695, 706, 3198
BarI GAAGNNNNNNTAC 2 cut(s) 585, 617
BauI CACGAG 1 cut(s) 485
Bbv12I GWGCWC 2 cut(s) 695, 1357
BbvCI CCTCAGC 1 cut(s) 2931
BccI CCATC 7 cut(s) 40, 368, 1330, 1697, 1721, 1753, 3136
BciT130I CCWGG 6 cut(s) 1505, 1520, 1865, 1976, 2972, 2997
BciVI GTATCC 3 cut(s) 508, 1947, 3310
BclI TGATCA 1 cut(s) 3148
BcoDI GTCTC 6 cut(s) 401, 558, 758, 1925, 1957, 3052
BfaI CTAG 4 cut(s) 540, 1697, 2130, 2729
BfmI CTRYAG 3 cut(s) 206, 643, 812
BfuAI ACCTGC 1 cut(s) 2362
BfuI GTATCC 3 cut(s) 508, 1947, 3310
BglII AGATCT 1 cut(s) 1342
BlpI GCTNAGC 2 cut(s) 2562, 2871
Bme1390I CCNGG 6 cut(s) 1505, 1520, 1865, 1976, 2972, 2997
Bme18I GGWCC 2 cut(s) 1175, 1489
BmeT110I CYCGRG 1 cut(s) 1877
BmgBI CACGTC 1 cut(s) 2419
BmgT120I GGNCC 6 cut(s) 378, 702, 703, 1175, 1489, 2938
BmiI GGNNCC 7 cut(s) 268, 379, 704, 1491, 2314, 2613, 3195
BmrFI CCNGG 6 cut(s) 1505, 1520, 1865, 1976, 2972, 2997
BmrI ACTGGG 2 cut(s) 543, 2107
BmuI ACTGGG 2 cut(s) 543, 2107
BoxI GACNNNNGTC 1 cut(s) 2758
BplI GAGNNNNNCTC 2 cut(s) 251, 283
BpmI CTGGAG 2 cut(s) 1266, 1569
Bpu10I CCTNAGC 2 cut(s) 2630, 2931
Bpu1102I GCTNAGC 2 cut(s) 2562, 2871
BpuEI CTTGAG 5 cut(s) 83, 1826, 2436, 2515, 3085
Bsa29I ATCGAT 1 cut(s) 477
BsaBI GATNNNNATC 3 cut(s) 359, 947, 1956
BsaI GGTCTC 2 cut(s) 558, 758
BsaWI WCCGGW 3 cut(s) 19, 269, 3160
BsaXI ACNNNNNCTCC 2 cut(s) 3055, 3085
Bsc4I CCNNNNNNNGG 7 cut(s) 256, 738, 804, 1225, 1310, 2173, 2947
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 7 cut(s) 241, 549, 1120, 1161, 2019, 2102, 2186
Bse21I CCTNAGG 1 cut(s) 69
Bse3DI GCAATG 3 cut(s) 1083, 2212, 2984
Bse8I GATNNNNATC 3 cut(s) 359, 947, 1956
BseBI CCWGG 6 cut(s) 1505, 1520, 1865, 1976, 2972, 2997
BseCI ATCGAT 1 cut(s) 477
BseGI GGATG 6 cut(s) 93, 715, 2781, 3034, 3151, 3226
BseJI GATNNNNATC 3 cut(s) 359, 947, 1956
BseLI CCNNNNNNNGG 7 cut(s) 256, 738, 804, 1225, 1310, 2173, 2947
BseMI GCAATG 3 cut(s) 1083, 2212, 2984
BseMII CTCAG 9 cut(s) 1440, 1952, 2537, 2553, 2585, 2679, 2862, 2922, 3126
BseNI ACTGG 7 cut(s) 241, 549, 1120, 1161, 2019, 2102, 2186
BseRI GAGGAG 8 cut(s) 50, 53, 443, 2894, 2948, 3050, 3094, 3299
BseSI GKGCMC 4 cut(s) 674, 706, 1357, 2051
BseYI CCCAGC 1 cut(s) 3257
BsgI GTGCAG 4 cut(s) 44, 333, 1137, 1560
Bsh1236I CGCG 2 cut(s) 140, 1210
BshNI GGYRCC 2 cut(s) 2312, 2611
BshTI ACCGGT 1 cut(s) 19
BshVI ATCGAT 1 cut(s) 477
BsiHKAI GWGCWC 2 cut(s) 695, 1357
BsiHKCI CYCGRG 1 cut(s) 1877
BsiSI CCGG 4 cut(s) 20, 270, 2316, 3161
BslFI GGGAC 2 cut(s) 589, 1332
BslI CCNNNNNNNGG 7 cut(s) 256, 738, 804, 1225, 1310, 2173, 2947
BsmAI GTCTC 6 cut(s) 401, 558, 758, 1925, 1957, 3052
BsmBI CGTCTC 2 cut(s) 1925, 3052
BsmFI GGGAC 2 cut(s) 589, 1332
BsmI GAATGC 2 cut(s) 373, 1765
Bso31I GGTCTC 2 cut(s) 558, 758
BsoBI CYCGRG 1 cut(s) 1877
Bsp120I GGGCCC 1 cut(s) 702
Bsp1286I GDGCHC 6 cut(s) 674, 695, 706, 1357, 2051, 3198
Bsp1720I GCTNAGC 2 cut(s) 2562, 2871
Bsp19I CCATGG 3 cut(s) 1171, 2785, 3198
BspACI CCGC 6 cut(s) 140, 247, 732, 2122, 2195, 3042
BspCNI CTCAG 9 cut(s) 1441, 1953, 2536, 2554, 2586, 2678, 2863, 2923, 3127
BspDI ATCGAT 1 cut(s) 477
BspFNI CGCG 2 cut(s) 140, 1210
BspLI GGNNCC 7 cut(s) 268, 379, 704, 1491, 2314, 2613, 3195
BspMAI CTGCAG 2 cut(s) 210, 647
BspMI ACCTGC 1 cut(s) 2362
BspPI GGATC 3 cut(s) 66, 815, 3236
BspQI GCTCTTC 1 cut(s) 2978
BspT107I GGYRCC 2 cut(s) 2312, 2611
BspTNI GGTCTC 2 cut(s) 558, 758
BsrDI GCAATG 3 cut(s) 1083, 2212, 2984
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 7 cut(s) 241, 549, 1120, 1161, 2019, 2102, 2186
BssAI RCCGGY 1 cut(s) 19
BssSI CACGAG 1 cut(s) 485
BssT1I CCWWGG 8 cut(s) 394, 1171, 1417, 1458, 1835, 2785, 3198, 3312
Bst2BI CACGAG 1 cut(s) 485
Bst2UI CCWGG 6 cut(s) 1505, 1520, 1865, 1976, 2972, 2997
Bst4CI ACNGT 9 cut(s) 816, 929, 1359, 1530, 1776, 1914, 1919, 2719, 2757
Bst6I CTCTTC 4 cut(s) 2207, 2978, 3222, 3276
BstDSI CCRYGG 3 cut(s) 1171, 2785, 3198
BstF5I GGATG 6 cut(s) 93, 715, 2781, 3034, 3151, 3226
BstFNI CGCG 2 cut(s) 140, 1210
BstHHI GCGC 1 cut(s) 1210
BstMAI GTCTC 6 cut(s) 401, 558, 758, 1925, 1957, 3052
BstNI CCWGG 6 cut(s) 1505, 1520, 1865, 1976, 2972, 2997
BstNSI RCATGY 4 cut(s) 653, 872, 961, 2441
BstPAI GACNNNNGTC 1 cut(s) 2758
BstSCI CCNGG 6 cut(s) 1503, 1518, 1863, 1974, 2970, 2995
BstSFI CTRYAG 3 cut(s) 206, 643, 812
BstSLI GKGCMC 4 cut(s) 674, 706, 1357, 2051
BstUI CGCG 2 cut(s) 140, 1210
BstX2I RGATCY 3 cut(s) 820, 1342, 3241
BstXI CCANNNNNNTGG 3 cut(s) 1486, 2421, 2608
BstYI RGATCY 3 cut(s) 820, 1342, 3241
Bsu15I ATCGAT 1 cut(s) 477
Bsu36I CCTNAGG 1 cut(s) 69
BsuI GTATCC 3 cut(s) 508, 1947, 3310
BsuTUI ATCGAT 1 cut(s) 477
BtgI CCRYGG 3 cut(s) 1171, 2785, 3198
BtrI CACGTC 1 cut(s) 2419
BtsCI GGATG 6 cut(s) 93, 715, 2781, 3034, 3151, 3226
BtsI GCAGTG 1 cut(s) 2573
BtsIMutI CAGTG 6 cut(s) 556, 1113, 1154, 1355, 1893, 2573
BveI ACCTGC 1 cut(s) 2362
CaiI CAGNNNCTG 2 cut(s) 3134, 3257
CfoI GCGC 1 cut(s) 1210
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 6 cut(s) 378, 702, 703, 1175, 1489, 2938
ClaI ATCGAT 1 cut(s) 477
CseI GACGC 2 cut(s) 2648, 3284
Csp6I GTAC 9 cut(s) 713, 882, 1252, 1325, 1610, 1777, 1915, 2547, 2991
CspAI ACCGGT 1 cut(s) 19
CviQI GTAC 9 cut(s) 713, 882, 1252, 1325, 1610, 1777, 1915, 2547, 2991
DraIII CACNNNGTG 1 cut(s) 1700
EaeI YGGCCR 2 cut(s) 1866, 1977
Eam1104I CTCTTC 4 cut(s) 2207, 2978, 3222, 3276
EarI CTCTTC 4 cut(s) 2207, 2978, 3222, 3276
EciI GGCGGA 1 cut(s) 236
Ecl136II GAGCTC 1 cut(s) 693
Eco130I CCWWGG 8 cut(s) 394, 1171, 1417, 1458, 1835, 2785, 3198, 3312
Eco147I AGGCCT 2 cut(s) 797, 1457
Eco24I GRGCYC 3 cut(s) 695, 706, 3198
Eco31I GGTCTC 2 cut(s) 558, 758
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 1175, 1489
Eco53kI GAGCTC 1 cut(s) 693
Eco57I CTGAAG 5 cut(s) 1352, 2051, 2163, 2973, 3300
Eco81I CCTNAGG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 1877
EcoICRI GAGCTC 1 cut(s) 693
EcoO109I RGGNCCY 3 cut(s) 378, 702, 703
EcoRI GAATTC 2 cut(s) 28, 658
EcoRII CCWGG 6 cut(s) 1503, 1518, 1863, 1974, 2970, 2995
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 8 cut(s) 394, 1171, 1417, 1458, 1835, 2785, 3198, 3312
EcoT22I ATGCAT 1 cut(s) 2059
EcoT38I GRGCYC 3 cut(s) 695, 706, 3198
ErhI CCWWGG 8 cut(s) 394, 1171, 1417, 1458, 1835, 2785, 3198, 3312
Esp3I CGTCTC 2 cut(s) 1925, 3052
FalI AAGNNNNNCTT 4 cut(s) 219, 251, 3231, 3263
FaqI GGGAC 2 cut(s) 589, 1332
FauI CCCGC 2 cut(s) 2115, 3035
FbaI TGATCA 1 cut(s) 3148
FokI GGATG 6 cut(s) 80, 702, 2768, 3041, 3158, 3233
FriOI GRGCYC 3 cut(s) 695, 706, 3198
FspBI CTAG 4 cut(s) 540, 1697, 2130, 2729
GlaI GCGC 1 cut(s) 1209
GsaI CCCAGC 1 cut(s) 3261
GsuI CTGGAG 2 cut(s) 1266, 1569
HapII CCGG 4 cut(s) 20, 270, 2316, 3161
HgaI GACGC 2 cut(s) 2648, 3284
HhaI GCGC 1 cut(s) 1210
Hin6I GCGC 1 cut(s) 1208
HinP1I GCGC 1 cut(s) 1208
HincII GTYRAC 1 cut(s) 1143
HindII GTYRAC 1 cut(s) 1143
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 9 cut(s) 474, 577, 682, 1499, 1965, 2153, 2519, 2527, 3269
HpaI GTTAAC 1 cut(s) 1143
HpaII CCGG 4 cut(s) 20, 270, 2316, 3161
HphI GGTGA 6 cut(s) 55, 1241, 1712, 2047, 2084, 3326
Hpy166II GTNNAC 9 cut(s) 623, 936, 1143, 1252, 1283, 1355, 1489, 2591, 2857
Hpy8I GTNNAC 9 cut(s) 623, 936, 1143, 1252, 1283, 1355, 1489, 2591, 2857
Hpy99I CGWCG 1 cut(s) 2946
HpyCH4III ACNGT 9 cut(s) 816, 929, 1359, 1530, 1776, 1914, 1919, 2719, 2757
HpyCH4IV ACGT 2 cut(s) 2418, 2675
HpySE526I ACGT 2 cut(s) 2418, 2675
HspAI GCGC 1 cut(s) 1208
Ksp22I TGATCA 1 cut(s) 3148
KspAI GTTAAC 1 cut(s) 1143
LguI GCTCTTC 1 cut(s) 2978
LmnI GCTCC 8 cut(s) 272, 430, 690, 1550, 2881, 2974, 3125, 3193
MaeI CTAG 4 cut(s) 540, 1697, 2130, 2729
MaeII ACGT 2 cut(s) 2418, 2675
MfeI CAATTG 2 cut(s) 1614, 2918
MflI RGATCY 3 cut(s) 820, 1342, 3241
MhlI GDGCHC 6 cut(s) 674, 695, 706, 1357, 2051, 3198
MlsI TGGCCA 2 cut(s) 1868, 1979
MluNI TGGCCA 2 cut(s) 1868, 1979
MlyI GAGTC 3 cut(s) 571, 1959, 2513
MmeI TCCRAC 1 cut(s) 2208
Mox20I TGGCCA 2 cut(s) 1868, 1979
Mph1103I ATGCAT 1 cut(s) 2059
MroXI GAANNNNTTC 2 cut(s) 600, 807
MscI TGGCCA 2 cut(s) 1868, 1979
MslI CAYNNNNRTG 5 cut(s) 956, 1428, 1484, 2346, 2784
Msp20I TGGCCA 2 cut(s) 1868, 1979
MspA1I CMGCKG 4 cut(s) 64, 734, 2870, 3257
MspI CCGG 4 cut(s) 20, 270, 2316, 3161
MspR9I CCNGG 6 cut(s) 1505, 1520, 1865, 1976, 2972, 2997
MunI CAATTG 2 cut(s) 1614, 2918
Mva1269I GAATGC 2 cut(s) 373, 1765
MvaI CCWGG 6 cut(s) 1505, 1520, 1865, 1976, 2972, 2997
MvnI CGCG 2 cut(s) 140, 1210
NcoI CCATGG 3 cut(s) 1171, 2785, 3198
NlaIV GGNNCC 7 cut(s) 268, 379, 704, 1491, 2314, 2613, 3195
NmeAIII GCCGAG 2 cut(s) 130, 769
NmuCI GTSAC 9 cut(s) 1162, 1185, 1229, 1817, 1846, 2072, 2339, 2831, 3332
NsiI ATGCAT 1 cut(s) 2059
NspI RCATGY 4 cut(s) 653, 872, 961, 2441
OliI CACNNNNGTG 1 cut(s) 1484
PaeI GCATGC 3 cut(s) 653, 872, 961
PaeR7I CTCGAG 1 cut(s) 1877
PceI AGGCCT 2 cut(s) 797, 1457
PciI ACATGT 1 cut(s) 2437
PciSI GCTCTTC 1 cut(s) 2978
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PctI GAATGC 2 cut(s) 373, 1765
PdmI GAANNNNTTC 2 cut(s) 600, 807
PfeI GAWTC 6 cut(s) 474, 682, 1499, 2153, 2527, 3269
PflFI GACNNNGTC 1 cut(s) 1183
PflMI CCANNNNNTGG 1 cut(s) 256
PfoI TCCNGGA 1 cut(s) 2970
PinAI ACCGGT 1 cut(s) 19
PleI GAGTC 3 cut(s) 571, 1959, 2513
PpsI GAGTC 3 cut(s) 571, 1959, 2513
PscI ACATGT 1 cut(s) 2437
PshAI GACNNNNGTC 1 cut(s) 2758
PshBI ATTAAT 2 cut(s) 186, 2063
PsiI TTATAA 1 cut(s) 3306
Psp124BI GAGCTC 1 cut(s) 695
Psp1406I AACGTT 1 cut(s) 2675
Psp6I CCWGG 6 cut(s) 1503, 1518, 1863, 1974, 2970, 2995
PspFI CCCAGC 1 cut(s) 3257
PspGI CCWGG 6 cut(s) 1503, 1518, 1863, 1974, 2970, 2995
PspN4I GGNNCC 7 cut(s) 268, 379, 704, 1491, 2314, 2613, 3195
PspOMI GGGCCC 1 cut(s) 702
PspPI GGNCC 6 cut(s) 378, 702, 703, 1175, 1489, 2938
PspXI VCTCGAGB 1 cut(s) 1877
PsrI GAACNNNNNNTAC 4 cut(s) 795, 827, 2983, 3015
PstI CTGCAG 2 cut(s) 210, 647
PstNI CAGNNNCTG 2 cut(s) 3134, 3257
PsuI RGATCY 3 cut(s) 820, 1342, 3241
PsyI GACNNNGTC 1 cut(s) 1183
PvuII CAGCTG 3 cut(s) 64, 2870, 3257
RsaI GTAC 9 cut(s) 714, 883, 1253, 1326, 1611, 1778, 1916, 2548, 2992
RsaNI GTAC 9 cut(s) 713, 882, 1252, 1325, 1610, 1777, 1915, 2547, 2991
RseI CAYNNNNRTG 5 cut(s) 956, 1428, 1484, 2346, 2784
SacI GAGCTC 1 cut(s) 695
SapI GCTCTTC 1 cut(s) 2978
Sau96I GGNCC 6 cut(s) 378, 702, 703, 1175, 1489, 2938
SchI GAGTC 3 cut(s) 571, 1959, 2513
ScrFI CCNGG 6 cut(s) 1505, 1520, 1865, 1976, 2972, 2997
SduI GDGCHC 6 cut(s) 674, 695, 706, 1357, 2051, 3198
SfcI CTRYAG 3 cut(s) 206, 643, 812
Sfr274I CTCGAG 1 cut(s) 1877
SinI GGWCC 2 cut(s) 1175, 1489
SlaI CTCGAG 1 cut(s) 1877
SmiMI CAYNNNNRTG 5 cut(s) 956, 1428, 1484, 2346, 2784
SmlI CTYRAG 6 cut(s) 98, 1805, 1877, 2451, 2494, 3100
SmoI CTYRAG 6 cut(s) 98, 1805, 1877, 2451, 2494, 3100
SphI GCATGC 3 cut(s) 653, 872, 961
SseBI AGGCCT 2 cut(s) 797, 1457
SsiI CCGC 6 cut(s) 140, 247, 732, 2122, 2195, 3042
SspI AATATT 2 cut(s) 329, 3358
SspMI CTAG 4 cut(s) 540, 1697, 2130, 2729
SstI GAGCTC 1 cut(s) 695
StuI AGGCCT 2 cut(s) 797, 1457
StyD4I CCNGG 6 cut(s) 1503, 1518, 1863, 1974, 2970, 2995
StyI CCWWGG 8 cut(s) 394, 1171, 1417, 1458, 1835, 2785, 3198, 3312
TaaI ACNGT 9 cut(s) 816, 929, 1359, 1530, 1776, 1914, 1919, 2719, 2757
TaiI ACGT 2 cut(s) 2421, 2678
TaqI TCGA 8 cut(s) 90, 120, 170, 470, 477, 1361, 1827, 1878
TaqII GACCGA 1 cut(s) 1192
TatI WGTACW 4 cut(s) 712, 1251, 1324, 1776
TauI GCSGC 2 cut(s) 734, 2198
TfiI GAWTC 6 cut(s) 474, 682, 1499, 2153, 2527, 3269
TscAI CASTG 6 cut(s) 556, 1120, 1161, 1362, 1900, 2573
TseFI GTSAC 9 cut(s) 1162, 1185, 1229, 1817, 1846, 2072, 2339, 2831, 3332
Tsp45I GTSAC 9 cut(s) 1162, 1185, 1229, 1817, 1846, 2072, 2339, 2831, 3332
TspGWI ACGGA 5 cut(s) 177, 1160, 2531, 3076, 3134
TspRI CASTG 6 cut(s) 556, 1120, 1161, 1362, 1900, 2573
Tth111I GACNNNGTC 1 cut(s) 1183
Van91I CCANNNNNTGG 1 cut(s) 256
VneI GTGCAC 1 cut(s) 1353
VpaK11BI GGWCC 2 cut(s) 1175, 1489
VspI ATTAAT 2 cut(s) 186, 2063
XapI RAATTY 7 cut(s) 28, 658, 1463, 1661, 2428, 2966, 3295
XceI RCATGY 4 cut(s) 653, 872, 961, 2441
XcmI CCANNNNNNNNNTGG 1 cut(s) 2170
XhoI CTCGAG 1 cut(s) 1877
XmnI GAANNNNTTC 2 cut(s) 600, 807
XspI CTAG 4 cut(s) 540, 1697, 2130, 2729
Zsp2I ATGCAT 1 cut(s) 2059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.