Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002247

Physical Location & Seq

Genomic Coordinates Forward (+)

5514040 .. 5514909

Gene Structure 870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g07840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAATATGCTAGATGTAACCATGCCTGATACTCTTACAGAAGAAAAGAAGAAGAAGGTCTTAGCAGCAGTTGATCAAGGAGACACGCTGATGAAAGCTTTGCAAGATGCAGTGCCGGAAGATGTTCGTGGAAAGCTAACATCTGCTGTTTCTGGAGCTCTGCATACTCAAGGCACAAACCTAAAGTTTGATCAACTTTTGGGTATTGCTCGGATTCCTGACATGTCTTCAGGTCTAAAGTCAAAGATCGAAGACAAGGTCATGGGAACATCAAGTTCAGAAGGGGTACAGAAAGACAATCGTTCATCAGATCTGTTGAAAAAGGATGATCTGGTGGACAGCTCAACTAACAAACTACCTGATGCAAACAAGCGTCCAGGGGGATTAGAATCAGAGGATCCTCCCTCAGAGGGATCAGAAAAGATTTCAAATCTGGACCAGTCTCAATCGTTGAGCAGTCAGGAAAGTGATATTTCTGATTCTGTTGGAAAGGACACCAGCGAATCAGGAAATAATTCTTCCAAAGAAAAGGCTCCTGAAGATCTTTCCAATAGTGAAAAGTTTTTAAATCTAGACCAGTCTCAATCGTTGAGCAGTCAGGAAAGTGATATTTCTGATTCTGTTGGAAAGGACACTAGCCAATCAGGAAATGACAAGTCTTCCAAGGAAAAGGCTCCTGAACGATCTTTCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

232

Amino Acids

24.73

Weight (kDa)

4.59

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140
fragaria_vesca	FvH4_1g09310 FvH4_1g09310 FvH4_1g09310 FvH4_1g09310
malus_domestica	MD02G1100300.v1.1 MD15G1223200.v1.1 MD15G1223300.v1.1
prunus_persica	Prupe.7G192500_v2.0.a1 Prupe.7G192500_v2.0.a1 Prupe.7G192500_v2.0.a1 Prupe.7G192500_v2.0.a1 Prupe.7G192500_v2.0.a1 Prupe.7G192500_v2.0.a1
pyrus_communis	pycom02g07830 pycom02g07840 pycom02g07850 pycom15g19730 pycom15g19740 pycom15g19750 pycom15g19760
rosa_chinensis	RchiOBHm_Chr2g0095891
rosa_laevigata	RLG00000016603
rosa_multiflora	Rmu_co8506623.1_g000001 Rmu_sc0014241.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146000
rosa_rugosa	Rorug02G0053500
rosa_samantha	Rh2AG102700 Rh2BG104100 Rh2CG106600 Rh2DG104300
rosa_wichuraiana	Rw2G007810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	392, 405, 421
AcuI	CTGAAG	2 cut(s)	213, 558
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	319, 429
AjnI	CCWGG	1 cut(s)	376
AloI	GAACNNNNNNTCC	1 cut(s)	672
AluBI	AGCT	4 cut(s)	98, 136, 158, 342
AluI	AGCT	4 cut(s)	98, 136, 158, 342
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	3 cut(s)	75, 447, 585
AlwI	GGATC	3 cut(s)	392, 405, 421
ApeKI	GCWGC	1 cut(s)	65
ArsI	GACNNNNNNTTYG	2 cut(s)	243, 275
Asp700I	GAANNNNTTC	2 cut(s)	123, 514
AspS9I	GGNCC	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	436
BamHI	GGATCC	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	160
BbsI	GAAGAC	3 cut(s)	219, 258, 651
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	378
BclI	TGATCA	2 cut(s)	73, 190
BcoDI	GTCTC	3 cut(s)	75, 447, 585
BfaI	CTAG	3 cut(s)	11, 572, 636
BglII	AGATCT	2 cut(s)	310, 541
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	3 cut(s)	399, 534, 675
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	2 cut(s)	97, 352
BpiI	GAAGAC	3 cut(s)	219, 258, 651
BpmI	CTGGAG	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	153
BsaBI	GATNNNNATC	1 cut(s)	388
BsaJI	CCNNGG	2 cut(s)	377, 663
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	2 cut(s)	439, 577
Bse8I	GATNNNNATC	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	377, 663
BseGI	GGATG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	2 cut(s)	439, 577
BseXI	GCAGC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	3 cut(s)	75, 447, 585
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	9 cut(s)	73, 190, 246, 310, 328, 397, 413, 541, 683
BspCNI	CTCAG	1 cut(s)	419
BspLI	GGNNCC	3 cut(s)	399, 534, 675
BspPI	GGATC	3 cut(s)	392, 405, 421
BsrI	ACTGG	2 cut(s)	439, 577
BssECI	CCNNGG	2 cut(s)	377, 663
BssMI	GATC	9 cut(s)	73, 190, 246, 310, 328, 397, 413, 541, 683
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	1 cut(s)	378
BstDEI	CTNAG	2 cut(s)	61, 406
BstF5I	GGATG	1 cut(s)	331
BstKTI	GATC	9 cut(s)	76, 193, 249, 313, 331, 400, 416, 544, 686
BstMAI	GTCTC	3 cut(s)	75, 447, 585
BstMBI	GATC	9 cut(s)	73, 190, 246, 310, 328, 397, 413, 541, 683
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	77
BstV2I	GAAGAC	3 cut(s)	219, 258, 651
BstX2I	RGATCY	3 cut(s)	310, 397, 541
BstYI	RGATCY	3 cut(s)	310, 397, 541
BtsCI	GGATG	1 cut(s)	331
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	436
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	3 cut(s)	22, 223, 262
CviJI	RGCY	7 cut(s)	98, 136, 158, 342, 533, 639, 674
CviKI_1	RGCY	7 cut(s)	98, 136, 158, 342, 533, 639, 674
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	2 cut(s)	61, 406
DpnI	GATC	9 cut(s)	75, 192, 248, 312, 330, 399, 415, 543, 685
DpnII	GATC	9 cut(s)	73, 190, 246, 310, 328, 397, 413, 541, 683
DraI	TTTAAA	1 cut(s)	567
Ecl136II	GAGCTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	663
Eco24I	GRGCYC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	158
Eco57I	CTGAAG	2 cut(s)	213, 558
EcoICRI	GAGCTC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	663
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	3 cut(s)	25, 226, 265
FaiI	YATR	5 cut(s)	8, 23, 165, 224, 263
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FatI	CATG	3 cut(s)	21, 222, 261
FbaI	TGATCA	2 cut(s)	73, 190
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	338
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	3 cut(s)	11, 572, 636
GluI	GCNGC	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	174
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	362
Hin1II	CATG	3 cut(s)	25, 226, 265
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	5 cut(s)	214, 389, 479, 503, 617
HpaII	CCGG	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	8 cut(s)	213, 280, 310, 394, 409, 418, 478, 616
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	49, 275
HpyCH4V	TGCA	4 cut(s)	103, 110, 163, 365
HpyF3I	CTNAG	2 cut(s)	61, 406
Hsp92II	CATG	3 cut(s)	25, 226, 265
Ksp22I	TGATCA	2 cut(s)	73, 190
Kzo9I	GATC	9 cut(s)	73, 190, 246, 310, 328, 397, 413, 541, 683
LmnI	GCTCC	3 cut(s)	155, 538, 679
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	2 cut(s)	97, 352
MaeI	CTAG	3 cut(s)	11, 572, 636
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	9 cut(s)	75, 192, 248, 312, 330, 399, 415, 543, 685
MboI	GATC	9 cut(s)	73, 190, 246, 310, 328, 397, 413, 541, 683
MboII	GAAGA	9 cut(s)	53, 61, 64, 131, 219, 263, 510, 551, 651
MflI	RGATCY	3 cut(s)	310, 397, 541
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	1 cut(s)	514
MmeI	TCCRAC	2 cut(s)	466, 604
MnlI	CCTC	4 cut(s)	388, 403, 411, 415
MroXI	GAANNNNTTC	2 cut(s)	123, 514
MseI	TTAA	1 cut(s)	566
MslI	CAYNNNNRTG	1 cut(s)	89
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
NdeII	GATC	9 cut(s)	73, 190, 246, 310, 328, 397, 413, 541, 683
NlaIII	CATG	3 cut(s)	25, 226, 265
NlaIV	GGNNCC	3 cut(s)	399, 534, 675
NspI	RCATGY	1 cut(s)	226
PciI	ACATGT	1 cut(s)	222
PdmI	GAANNNNTTC	2 cut(s)	123, 514
PfeI	GAWTC	5 cut(s)	214, 389, 479, 503, 617
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	67
PscI	ACATGT	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	3 cut(s)	399, 534, 675
PspPI	GGNCC	1 cut(s)	436
PsuI	RGATCY	3 cut(s)	310, 397, 541
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	9 cut(s)	73, 190, 246, 310, 328, 397, 413, 541, 683
Sau96I	GGNCC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	9 cut(s)	60, 100, 138, 160, 183, 235, 261, 344, 361
SfaNI	GCATC	2 cut(s)	97, 352
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
Sse9I	AATT	1 cut(s)	514
SspMI	CTAG	3 cut(s)	11, 572, 636
SstI	GAGCTC	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	663
TaqI	TCGA	1 cut(s)	249
TasI	AATT	1 cut(s)	514
TfiI	GAWTC	5 cut(s)	214, 389, 479, 503, 617
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	3 cut(s)	17, 107, 294
TspRI	CASTG	1 cut(s)	117
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	436
XbaI	TCTAGA	1 cut(s)	571
XceI	RCATGY	1 cut(s)	226
XmnI	GAANNNNTTC	2 cut(s)	123, 514
XspI	CTAG	3 cut(s)	11, 572, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.