Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002247

Physical Location & Seq

Genomic Coordinates Forward (+)

14163564 .. 14165493

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g19760.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTTTGAGGAGGCTGAGAAAAACCAAAGTAACATTGTCACAAGTCTTGCTGAGAAAGCCATGTCAGTTGCTGCTCCCGTGGTACCCACCAAGGAAGATGGTGAAGTGGACCAAGAAGGATTAGTCACAATGTTGACAGATTTGGGACAAAAGGGTGGCATGTTGAGGTTAGTTGGAAAAGCTGCTTTGCTTTGGGGTGGTCTACGTGGTGCAATGAGTTTGACTGACAAGCTTATCCAATTTCTTGATATAGCTGAGCGTCCCTTAATCCAGAGGATTTTTGGGTTTGTCGGTATGGTTCTTGTTTTGTGGTCACCAATTGTTGTTCCACTACTTCCATCATTTTTGCAAAGCTGGACAACCAATACATCCTCTAGAATTGCTGAACTTGCTTGCATTGTTGGCCTCTACACGGCTTTTATGATACTTGTTGTGATATGGGGCAAAAGAATACGTGGATATGAAAATCCTCTTCACAGATATGGGCTAGATTTAACGTCATTGCCAAAGTTAGGTGATTTTTTGAAGGGCTTGGTTGGTGGAGTTGCCCTTGTTTTGTCAATACACTCAGTAAGAGCACTACTTGACTCTGCGAATCTCTCTTGGCCCTCGACTCCATCTTCTTTGGATGCTGTCTCACAGCTCAAATTGTGTACGAAAGGGCTTGTGATGGTTGGTCAAGGAGTTATAGTAGCTACTGGTATTGCTCTTGTGGAAGAATTGCTTTTCAGGGCATGGCTGCCCCAAGAAATTGCTGCAGATCTTGGATATCATCGAGGAATAATTATATCAGGACTTGCGTTCGCTTTATCCCAGAGGTCTCCGCTATCAACACCAGGTCTATGGCTTCTATCTTTGAGTTTAGCAGGTGCTCGGCAAAGAAATGAAGGCAGCCCTTCCATACCAATTGGGTTGCGTGCAGGAATTATCGCTTCAAGTTTCATCATACAGAAGGGTGGCTTCCTGACCTACCGGGGTAACTTTCCTCCTTGGCTTATGGGGACACAGTCATTCCAACCGTTTAGTGGGCTAATTGGTTTTGCATTTACCTTAGTTTTAGCACTAGCTCTGTACCCTACACAGCCTCTTCGTGAAGAGAATGCAGAAAGGACTACTGAAGAATTTAAGAAACAGCATGCTGGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

383

Amino Acids

41.33

Weight (kDa)

8.48

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140
fragaria_vesca	FvH4_1g09310 FvH4_1g09310 FvH4_1g09310 FvH4_1g09310
malus_domestica	MD02G1100300.v1.1 MD15G1223200.v1.1 MD15G1223300.v1.1
prunus_persica	Prupe.7G192500_v2.0.a1 Prupe.7G192500_v2.0.a1 Prupe.7G192500_v2.0.a1 Prupe.7G192500_v2.0.a1 Prupe.7G192500_v2.0.a1 Prupe.7G192500_v2.0.a1
pyrus_communis	pycom02g07830 pycom02g07840 pycom02g07850 pycom15g19730 pycom15g19740 pycom15g19750 pycom15g19760
rosa_chinensis	RchiOBHm_Chr2g0095891
rosa_laevigata	RLG00000016603
rosa_multiflora	Rmu_co8506623.1_g000001 Rmu_sc0014241.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146000
rosa_rugosa	Rorug02G0053500
rosa_samantha	Rh2AG102700 Rh2BG104100 Rh2CG106600 Rh2DG104300
rosa_wichuraiana	Rw2G007810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	857
Acc36I	ACCTGC	1 cut(s)	857
Acc65I	GGTACC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	202
AciI	CCGC	1 cut(s)	824
AcsI	RAATTY	1 cut(s)	1121
AcuI	CTGAAG	1 cut(s)	1137
AfaI	GTAC	3 cut(s)	84, 655, 1073
AfiI	CCNNNNNNNGG	3 cut(s)	412, 512, 1025
AgsI	TTSAA	2 cut(s)	526, 936
AjnI	CCWGG	1 cut(s)	835
AluBI	AGCT	7 cut(s)	182, 232, 254, 354, 643, 695, 1067
AluI	AGCT	7 cut(s)	182, 232, 254, 354, 643, 695, 1067
Alw21I	GWGCWC	2 cut(s)	580, 874
Alw26I	GTCTC	2 cut(s)	640, 825
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	2 cut(s)	403, 605
ApeKI	GCWGC	5 cut(s)	71, 182, 739, 755, 891
ApoI	RAATTY	1 cut(s)	1121
Asp718I	GGTACC	1 cut(s)	82
AspS9I	GGNCC	2 cut(s)	109, 606
AsuC2I	CCSGG	1 cut(s)	974
AsuHPI	GGTGA	3 cut(s)	113, 306, 527
AvaII	GGWCC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	82
Bbv12I	GWGCWC	2 cut(s)	580, 874
BbvI	GCAGC	5 cut(s)	58, 169, 726, 742, 903
BccI	CCATC	4 cut(s)	92, 346, 625, 664
BceAI	ACGGC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	837
BcnI	CCSGG	1 cut(s)	974
BcoDI	GTCTC	2 cut(s)	640, 825
BfaI	CTAG	3 cut(s)	375, 488, 1064
BfmI	CTRYAG	1 cut(s)	756
BfuAI	ACCTGC	1 cut(s)	857
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	5 cut(s)	72, 183, 740, 756, 892
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	5 cut(s)	73, 184, 741, 757, 893
Bme1390I	CCNGG	2 cut(s)	837, 974
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	109, 606
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	837, 974
BmsI	GCATC	1 cut(s)	619
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	974
BsaAI	YACGTR	2 cut(s)	206, 455
BsaI	GGTCTC	1 cut(s)	825
BsaJI	CCNNGG	4 cut(s)	78, 90, 973, 989
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	3 cut(s)	412, 512, 1025
Bse1I	ACTGG	1 cut(s)	703
Bse3DI	GCAATG	2 cut(s)	219, 500
BseBI	CCWGG	1 cut(s)	837
BseDI	CCNNGG	4 cut(s)	78, 90, 973, 989
BseGI	GGATG	2 cut(s)	368, 634
BseLI	CCNNNNNNNGG	3 cut(s)	412, 512, 1025
BseMI	GCAATG	2 cut(s)	219, 500
BseMII	CTCAG	4 cut(s)	6, 42, 246, 582
BseNI	ACTGG	1 cut(s)	703
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	5 cut(s)	58, 169, 726, 742, 903
BsgI	GTGCAG	1 cut(s)	939
BshFI	GGCC	2 cut(s)	405, 607
BshNI	GGYRCC	1 cut(s)	82
BsiHKAI	GWGCWC	2 cut(s)	580, 874
BsiSI	CCGG	1 cut(s)	973
BslFI	GGGAC	3 cut(s)	159, 246, 1015
BslI	CCNNNNNNNGG	3 cut(s)	412, 512, 1025
BsmAI	GTCTC	2 cut(s)	640, 825
BsmFI	GGGAC	3 cut(s)	159, 246, 1015
BsmI	GAATGC	1 cut(s)	1105
BsnI	GGCC	2 cut(s)	405, 607
Bso31I	GGTCTC	1 cut(s)	825
Bsp1286I	GDGCHC	2 cut(s)	580, 874
Bsp143I	GATC	1 cut(s)	760
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	1 cut(s)	824
BspANI	GGCC	2 cut(s)	405, 607
BspCNI	CTCAG	4 cut(s)	7, 43, 247, 581
BspLI	GGNNCC	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	760
BspMI	ACCTGC	1 cut(s)	857
BspT107I	GGYRCC	1 cut(s)	82
BspTNI	GGTCTC	1 cut(s)	825
BsrDI	GCAATG	2 cut(s)	219, 500
BsrI	ACTGG	1 cut(s)	703
BssECI	CCNNGG	4 cut(s)	78, 90, 973, 989
BssMI	GATC	1 cut(s)	760
BssT1I	CCWWGG	2 cut(s)	90, 989
Bst2UI	CCWGG	1 cut(s)	837
Bst4CI	ACNGT	2 cut(s)	1008, 1020
Bst6I	CTCTTC	3 cut(s)	477, 1089, 1092
BstBAI	YACGTR	2 cut(s)	206, 455
BstC8I	GCNNGC	3 cut(s)	394, 918, 1137
BstDEI	CTNAG	5 cut(s)	15, 51, 255, 568, 1051
BstDSI	CCRYGG	1 cut(s)	78
BstEII	GGTNACC	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	368, 634
BstKTI	GATC	1 cut(s)	763
BstMAI	GTCTC	2 cut(s)	640, 825
BstMBI	GATC	1 cut(s)	760
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 389, 402
BstNI	CCWGG	1 cut(s)	837
BstNSI	RCATGY	2 cut(s)	163, 1139
BstPI	GGTNACC	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	835, 972
BstSFI	CTRYAG	1 cut(s)	756
BstV1I	GCAGC	5 cut(s)	58, 169, 726, 742, 903
BstX2I	RGATCY	1 cut(s)	760
BstXI	CCANNNNNNTGG	1 cut(s)	843
BstYI	RGATCY	1 cut(s)	760
BsuRI	GGCC	2 cut(s)	405, 607
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	368, 634
BveI	ACCTGC	1 cut(s)	857
Cac8I	GCNNGC	3 cut(s)	394, 918, 1137
CaiI	CAGNNNCTG	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	109, 606
CseI	GACGC	1 cut(s)	248
CsiI	ACCWGGT	1 cut(s)	835
Csp6I	GTAC	3 cut(s)	83, 654, 1072
CviAII	CATG	4 cut(s)	61, 160, 735, 1136
CviQI	GTAC	3 cut(s)	83, 654, 1072
DdeI	CTNAG	5 cut(s)	15, 51, 255, 568, 1051
DpnI	GATC	1 cut(s)	762
DpnII	GATC	1 cut(s)	760
Eam1104I	CTCTTC	3 cut(s)	477, 1089, 1092
EarI	CTCTTC	3 cut(s)	477, 1089, 1092
Eco130I	CCWWGG	2 cut(s)	90, 989
Eco31I	GGTCTC	1 cut(s)	825
Eco32I	GATATC	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	1137
Eco91I	GGTNACC	1 cut(s)	312
EcoO65I	GGTNACC	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	835
EcoRV	GATATC	1 cut(s)	770
EcoT14I	CCWWGG	2 cut(s)	90, 989
ErhI	CCWWGG	2 cut(s)	90, 989
FaeI	CATG	4 cut(s)	64, 163, 738, 1139
FalI	AAGNNNNNCTT	4 cut(s)	708, 740, 944, 976
FaqI	GGGAC	3 cut(s)	159, 246, 1015
FatI	CATG	4 cut(s)	60, 159, 734, 1135
FblI	GTMKAC	1 cut(s)	202
Fnu4HI	GCNGC	5 cut(s)	72, 183, 740, 756, 892
FokI	GGATG	2 cut(s)	355, 641
Fsp4HI	GCNGC	5 cut(s)	72, 183, 740, 756, 892
FspBI	CTAG	3 cut(s)	375, 488, 1064
GluI	GCNGC	5 cut(s)	72, 183, 740, 756, 892
HaeIII	GGCC	2 cut(s)	405, 607
HapII	CCGG	1 cut(s)	973
HgaI	GACGC	1 cut(s)	248
Hin1II	CATG	4 cut(s)	64, 163, 738, 1139
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	3 cut(s)	587, 595, 613
HpaII	CCGG	1 cut(s)	973
HphI	GGTGA	3 cut(s)	113, 306, 527
Hpy166II	GTNNAC	4 cut(s)	109, 135, 203, 654
Hpy188III	TCNNGA	6 cut(s)	245, 271, 375, 792, 964, 1091
Hpy8I	GTNNAC	4 cut(s)	109, 135, 203, 654
HpyAV	CCTTC	5 cut(s)	110, 520, 881, 906, 946
HpyCH4III	ACNGT	2 cut(s)	1008, 1020
HpyCH4IV	ACGT	3 cut(s)	205, 454, 497
HpyCH4V	TGCA	7 cut(s)	212, 349, 396, 758, 920, 1043, 1103
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 389, 402
HpyF3I	CTNAG	5 cut(s)	15, 51, 255, 568, 1051
HpySE526I	ACGT	3 cut(s)	205, 454, 497
Hsp92II	CATG	4 cut(s)	64, 163, 738, 1139
KpnI	GGTACC	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	760
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	5 cut(s)	58, 169, 726, 742, 903
LweI	GCATC	1 cut(s)	619
MabI	ACCWGGT	1 cut(s)	835
MaeI	CTAG	3 cut(s)	375, 488, 1064
MaeII	ACGT	3 cut(s)	205, 454, 497
MaeIII	GTNAC	5 cut(s)	29, 37, 124, 312, 977
MalI	GATC	1 cut(s)	762
MboI	GATC	1 cut(s)	760
MboII	GAAGA	7 cut(s)	107, 464, 612, 728, 1079, 1106, 1130
MfeI	CAATTG	2 cut(s)	318, 906
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	2 cut(s)	580, 874
MlyI	GAGTC	2 cut(s)	581, 607
MmeI	TCCRAC	2 cut(s)	154, 1039
MseI	TTAA	3 cut(s)	266, 494, 1125
MslI	CAYNNNNRTG	2 cut(s)	480, 1140
MspI	CCGG	1 cut(s)	973
MspR9I	CCNGG	2 cut(s)	837, 974
MunI	CAATTG	2 cut(s)	318, 906
Mva1269I	GAATGC	1 cut(s)	1105
MvaI	CCWGG	1 cut(s)	837
MwoI	GCNNNNNNNGC	3 cut(s)	56, 389, 402
NciI	CCSGG	1 cut(s)	974
NdeII	GATC	1 cut(s)	760
NlaIII	CATG	4 cut(s)	64, 163, 738, 1139
NlaIV	GGNNCC	1 cut(s)	84
NmeAIII	GCCGAG	1 cut(s)	853
NmuCI	GTSAC	3 cut(s)	37, 124, 312
NspI	RCATGY	2 cut(s)	163, 1139
PaeI	GCATGC	1 cut(s)	1139
PaqCI	CACCTGC	1 cut(s)	857
PctI	GAATGC	1 cut(s)	1105
PfeI	GAWTC	1 cut(s)	595
PflFI	GACNNNGTC	1 cut(s)	1006
PkrI	GCNGC	5 cut(s)	73, 184, 741, 757, 893
PleI	GAGTC	2 cut(s)	581, 607
PpsI	GAGTC	2 cut(s)	581, 607
Ppu21I	YACGTR	2 cut(s)	206, 455
Psp6I	CCWGG	1 cut(s)	835
PspEI	GGTNACC	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	835
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	109, 606
PstI	CTGCAG	1 cut(s)	760
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	760
PsyI	GACNNNGTC	1 cut(s)	1006
RsaI	GTAC	3 cut(s)	84, 655, 1073
RsaNI	GTAC	3 cut(s)	83, 654, 1072
RseI	CAYNNNNRTG	2 cut(s)	480, 1140
SaqAI	TTAA	3 cut(s)	266, 494, 1125
SatI	GCNGC	5 cut(s)	72, 183, 740, 756, 892
Sau3AI	GATC	1 cut(s)	760
Sau96I	GGNCC	2 cut(s)	109, 606
SchI	GAGTC	2 cut(s)	581, 607
ScrFI	CCNGG	2 cut(s)	837, 974
SduI	GDGCHC	2 cut(s)	580, 874
SexAI	ACCWGGT	1 cut(s)	835
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	1 cut(s)	756
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	2 cut(s)	480, 1140
SphI	GCATGC	1 cut(s)	1139
SsiI	CCGC	1 cut(s)	824
SspMI	CTAG	3 cut(s)	375, 488, 1064
StyD4I	CCNGG	2 cut(s)	835, 972
StyI	CCWWGG	2 cut(s)	90, 989
TaaI	ACNGT	2 cut(s)	1008, 1020
TaiI	ACGT	3 cut(s)	208, 457, 500
TaqI	TCGA	2 cut(s)	611, 775
TfiI	GAWTC	1 cut(s)	595
Tru1I	TTAA	3 cut(s)	266, 494, 1125
Tru9I	TTAA	3 cut(s)	266, 494, 1125
TseFI	GTSAC	3 cut(s)	37, 124, 312
TseI	GCWGC	5 cut(s)	71, 182, 739, 755, 891
Tsp45I	GTSAC	3 cut(s)	37, 124, 312
TspDTI	ATGAA	3 cut(s)	477, 900, 931
Tth111I	GACNNNGTC	1 cut(s)	1006
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	1 cut(s)	1121
XbaI	TCTAGA	1 cut(s)	374
XceI	RCATGY	2 cut(s)	163, 1139
XcmI	CCANNNNNNNNNTGG	2 cut(s)	278, 1022
XmiI	GTMKAC	1 cut(s)	202
XspI	CTAG	3 cut(s)	375, 488, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.