Rorug02G0053500

CAAX amino terminal protease family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002247
Physical Location & Seq
Reverse (-)
4100489 .. 4102115
1627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0053500.1

Sequence Viewer

Length: 567 bp
ATGATGGAATTGTGCTTGGTGTCTGTACAATGGAGAATGATTCTTGGCGACAGATTGAGTGCTTGTTTCCCTACAAATCTTTATCAAAGGATCGTGGTGAACGGTGCTGTTCATTGGTTGGTGAGTAAGGTTGCAGATGGAACATTGGTGATTATGTCTTTCCTTTTAGTAGAGGAGGAGGTTAGGGAAATTCCACTACCGCCCATTCCCAGTACTCTTTCAAGTCGACTAGGGGTATTCAGAAATTGGCTATGTATAACACTAGTATCAGAATGGAATGCAGGAGAAACATTTAATGAGTTTTGGGTCATGAAGGAATATGGAGTGAGGGAATCTTGGACTAAAATGCAGGTATGCAAACCATATCACGAATTATCACATTCCGGTTTCTGTACAGAGTCTCATGATCTGATGGTGTTTGATGAATTGTCATTAGTTATGTACAATTTTAATGATGGAACATTTTGGAATCTATCAATTGGTGATCTTAGCGAAAATGGTCGTTTTGGTAGCGTTGGTATCTATGTGGAGAGCTTACCCTTCACTCACCGATCAAGATCAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

188

Amino Acids

21.57

Weight (kDa)

5.19

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 8 - 179 2.6e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 340
AccI GTMKAC 1 cut(s) 226
AciI CCGC 1 cut(s) 200
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 1 cut(s) 189
AfaI GTAC 4 cut(s) 27, 214, 394, 443
AgsI TTSAA 1 cut(s) 222
AhlI ACTAGT 1 cut(s) 262
AluBI AGCT 1 cut(s) 534
AluI AGCT 1 cut(s) 534
Alw26I GTCTC 1 cut(s) 405
AlwI GGATC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 189
AsuHPI GGTGA 5 cut(s) 109, 133, 160, 494, 539
BaeI ACNNNNGTAYC 2 cut(s) 249, 282
BccI CCATC 3 cut(s) 131, 406, 449
BcoDI GTCTC 1 cut(s) 405
BcuI ACTAGT 1 cut(s) 262
BfaI CTAG 2 cut(s) 230, 263
BfuAI ACCTGC 1 cut(s) 340
BmcAI AGTACT 1 cut(s) 214
BmrI ACTGGG 1 cut(s) 204
BmuI ACTGGG 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 556
BsaWI WCCGGW 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 556
BseJI GATNNNNATC 1 cut(s) 556
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 188, 191
BsiSI CCGG 1 cut(s) 384
BsmAI GTCTC 1 cut(s) 405
BsmI GAATGC 1 cut(s) 283
Bsp1407I TGTACA 3 cut(s) 25, 392, 441
Bsp143I GATC 5 cut(s) 90, 406, 484, 551, 557
BspACI CCGC 1 cut(s) 200
BspHI TCATGA 2 cut(s) 309, 403
BspMI ACCTGC 1 cut(s) 340
BspPI GGATC 1 cut(s) 98
BsrGI TGTACA 3 cut(s) 25, 392, 441
BsrI ACTGG 1 cut(s) 210
BssMI GATC 5 cut(s) 90, 406, 484, 551, 557
Bst4CI ACNGT 1 cut(s) 104
BstAUI TGTACA 3 cut(s) 25, 392, 441
BstDEI CTNAG 1 cut(s) 488
BstKTI GATC 5 cut(s) 93, 409, 487, 554, 560
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 5 cut(s) 90, 406, 484, 551, 557
BveI ACCTGC 1 cut(s) 340
CciI TCATGA 2 cut(s) 309, 403
Csp6I GTAC 4 cut(s) 26, 213, 393, 442
CviAII CATG 2 cut(s) 310, 404
CviJI RGCY 2 cut(s) 250, 534
CviKI_1 RGCY 2 cut(s) 250, 534
CviQI GTAC 4 cut(s) 26, 213, 393, 442
DdeI CTNAG 1 cut(s) 488
DpnI GATC 5 cut(s) 92, 408, 486, 553, 559
DpnII GATC 5 cut(s) 90, 406, 484, 551, 557
FaeI CATG 2 cut(s) 313, 407
FatI CATG 2 cut(s) 309, 403
FblI GTMKAC 1 cut(s) 226
FspBI CTAG 2 cut(s) 230, 263
HapII CCGG 1 cut(s) 384
Hin1II CATG 2 cut(s) 313, 407
HincII GTYRAC 1 cut(s) 227
HindII GTYRAC 1 cut(s) 227
HinfI GANTC 4 cut(s) 40, 332, 398, 469
HpaII CCGG 1 cut(s) 384
HphI GGTGA 5 cut(s) 109, 133, 160, 494, 539
Hpy166II GTNNAC 2 cut(s) 100, 227
Hpy188I TCNGA 3 cut(s) 242, 271, 411
Hpy188III TCNNGA 4 cut(s) 310, 368, 404, 555
Hpy8I GTNNAC 2 cut(s) 100, 227
HpyAV CCTTC 2 cut(s) 307, 550
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 4 cut(s) 134, 281, 349, 357
HpyF3I CTNAG 1 cut(s) 488
Hsp92II CATG 2 cut(s) 313, 407
Kzo9I GATC 5 cut(s) 90, 406, 484, 551, 557
LpnPI CCDG 4 cut(s) 223, 267, 335, 397
MaeI CTAG 2 cut(s) 230, 263
MalI GATC 5 cut(s) 92, 408, 486, 553, 559
MboI GATC 5 cut(s) 90, 406, 484, 551, 557
MfeI CAATTG 1 cut(s) 477
MluCI AATT 7 cut(s) 8, 189, 244, 371, 425, 445, 477
MlyI GAGTC 1 cut(s) 407
MnlI CCTC 4 cut(s) 166, 169, 172, 321
MseI TTAA 2 cut(s) 294, 450
MspI CCGG 1 cut(s) 384
MunI CAATTG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 283
NdeII GATC 5 cut(s) 90, 406, 484, 551, 557
NlaIII CATG 2 cut(s) 313, 407
PagI TCATGA 2 cut(s) 309, 403
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 3 cut(s) 40, 332, 469
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
RsaI GTAC 4 cut(s) 27, 214, 394, 443
RsaNI GTAC 4 cut(s) 26, 213, 393, 442
SalI GTCGAC 1 cut(s) 225
SaqAI TTAA 2 cut(s) 294, 450
Sau3AI GATC 5 cut(s) 90, 406, 484, 551, 557
ScaI AGTACT 1 cut(s) 214
SchI GAGTC 1 cut(s) 407
SetI ASST 4 cut(s) 132, 183, 354, 536
SpeI ACTAGT 1 cut(s) 262
Sse9I AATT 7 cut(s) 8, 189, 244, 371, 425, 445, 477
SsiI CCGC 1 cut(s) 200
SspMI CTAG 2 cut(s) 230, 263
TaaI ACNGT 1 cut(s) 104
TaqI TCGA 1 cut(s) 226
TasI AATT 7 cut(s) 8, 189, 244, 371, 425, 445, 477
TatI WGTACW 4 cut(s) 25, 212, 392, 441
TfiI GAWTC 3 cut(s) 40, 332, 469
Tru1I TTAA 2 cut(s) 294, 450
Tru9I TTAA 2 cut(s) 294, 450
TspDTI ATGAA 3 cut(s) 101, 326, 438
XapI RAATTY 1 cut(s) 189
XmiI GTMKAC 1 cut(s) 226
XspI CTAG 2 cut(s) 230, 263
ZrmI AGTACT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.