Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002247

Physical Location & Seq

Genomic Coordinates Forward (+)

14162498 .. 14162953

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g19750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAAAAATATGGAACCCTATCTTTCCAAAGATATGGAACAAGTGGCTAATGCAGTTTCATTTGATGTTGGATATGACAAGTATGCTCCATGTTTGGAAGTTGAATACCATAGTATTATTGACTGCACTACAGAAAAAGTTGGTACTCTCCATGGTGAGCATATAATAAGAGCCATATCATCTTCTGTTCAGGGCACTAGTTACTTGAGAAGAGTGCTGCCAATTGGTGTTATAGTAGGCTCGAGCCTAGCGGCGCTGAGAAAATATTTTGATGTGGTTACGATCCATAACTATGGTCAAATAGAAGCTCTGACGCTTAGTCGAGCAAAAGTTTCTGGAAAAAAGATCTGGGCAAGGCTAGCGGCACAGAGATTCAACACATGCCTGTTGATAAATCTGATCGAAGTGCTAGCTTGGACAGTTCAGTTAACAGGGAAGGGGAAAAGAACTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

152

Amino Acids

16.76

Weight (kDa)

9.17

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140 AT2G03140
fragaria_vesca	FvH4_1g09310 FvH4_1g09310 FvH4_1g09310 FvH4_1g09310
malus_domestica	MD02G1100300.v1.1 MD15G1223200.v1.1 MD15G1223300.v1.1
prunus_persica	Prupe.7G192500_v2.0.a1 Prupe.7G192500_v2.0.a1 Prupe.7G192500_v2.0.a1 Prupe.7G192500_v2.0.a1 Prupe.7G192500_v2.0.a1 Prupe.7G192500_v2.0.a1
pyrus_communis	pycom02g07830 pycom02g07840 pycom02g07850 pycom15g19730 pycom15g19740 pycom15g19750 pycom15g19760
rosa_chinensis	RchiOBHm_Chr2g0095891
rosa_laevigata	RLG00000016603
rosa_multiflora	Rmu_co8506623.1_g000001 Rmu_sc0014241.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146000
rosa_rugosa	Rorug02G0053500
rosa_samantha	Rh2AG102700 Rh2BG104100 Rh2CG106600 Rh2DG104300
rosa_wichuraiana	Rw2G007810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	251, 362
AclWI	GGATC	1 cut(s)	277
AfaI	GTAC	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	104, 376
AhdI	GACNNNNNGTC	1 cut(s)	318
AhlI	ACTAGT	1 cut(s)	197
AluBI	AGCT	2 cut(s)	308, 413
AluI	AGCT	2 cut(s)	308, 413
AlwI	GGATC	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	167
AsuNHI	GCTAGC	2 cut(s)	358, 409
AvaI	CYCGRG	1 cut(s)	241
BaeGI	GKGCMC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	204
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	4 cut(s)	198, 248, 359, 410
BfmI	CTRYAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	257
BglII	AGATCT	1 cut(s)	345
BisI	GCNGC	3 cut(s)	218, 252, 363
BlsI	GCNGC	3 cut(s)	219, 253, 364
BmeRI	GACNNNNNGTC	1 cut(s)	318
BmeT110I	CYCGRG	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	15
BmtI	GCTAGC	2 cut(s)	362, 413
BpuEI	CTTGAG	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	454
BseDI	CCNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	454
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	204
BsgI	GTGCAG	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	282, 345, 399
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	2 cut(s)	251, 362
BspCNI	CTCAG	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	15
BspOI	GCTAGC	2 cut(s)	362, 413
BspPI	GGATC	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	3 cut(s)	282, 345, 399
BssT1I	CCWWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	1 cut(s)	205
BstC8I	GCNNGC	2 cut(s)	360, 411
BstDEI	CTNAG	2 cut(s)	257, 317
BstDSI	CCRYGG	1 cut(s)	151
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	3 cut(s)	285, 348, 402
BstMBI	GATC	3 cut(s)	282, 345, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNSI	RCATGY	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	129
BstSLI	GKGCMC	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	345
BstXI	CCANNNNNNTGG	2 cut(s)	34, 293
BstYI	RGATCY	1 cut(s)	345
BtgI	CCRYGG	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	360, 411
CfoI	GCGC	1 cut(s)	256
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	3 cut(s)	90, 152, 381
CviJI	RGCY	7 cut(s)	47, 173, 240, 246, 308, 358, 413
CviKI_1	RGCY	7 cut(s)	47, 173, 240, 246, 308, 358, 413
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	2 cut(s)	257, 317
DpnI	GATC	3 cut(s)	284, 347, 401
DpnII	GATC	3 cut(s)	282, 345, 399
DriI	GACNNNNNGTC	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	205
Eam1105I	GACNNNNNGTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	3 cut(s)	93, 155, 384
FatI	CATG	3 cut(s)	89, 151, 380
Fnu4HI	GCNGC	3 cut(s)	218, 252, 363
Fsp4HI	GCNGC	3 cut(s)	218, 252, 363
FspBI	CTAG	4 cut(s)	198, 248, 359, 410
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	3 cut(s)	218, 252, 363
HaeII	RGCGCY	1 cut(s)	257
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	3 cut(s)	93, 155, 384
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	1 cut(s)	372
HpaI	GTTAAC	1 cut(s)	429
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	2 cut(s)	312, 399
Hpy188III	TCNNGA	1 cut(s)	336
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	1 cut(s)	430
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4V	TGCA	2 cut(s)	53, 126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	2 cut(s)	257, 317
Hsp92II	CATG	3 cut(s)	93, 155, 384
HspAI	GCGC	1 cut(s)	254
KspAI	GTTAAC	1 cut(s)	429
Kzo9I	GATC	3 cut(s)	282, 345, 399
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	6 cut(s)	176, 321, 334, 398, 417, 435
Lsp1109I	GCAGC	1 cut(s)	204
MaeI	CTAG	4 cut(s)	198, 248, 359, 410
MaeIII	GTNAC	2 cut(s)	200, 277
MalI	GATC	3 cut(s)	284, 347, 401
MboI	GATC	3 cut(s)	282, 345, 399
MboII	GAAGA	2 cut(s)	174, 222
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	49
MseI	TTAA	1 cut(s)	428
MslI	CAYNNNNRTG	1 cut(s)	291
MunI	CAATTG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	359
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	3 cut(s)	282, 345, 399
NheI	GCTAGC	2 cut(s)	358, 409
NlaIII	CATG	3 cut(s)	93, 155, 384
NlaIV	GGNNCC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	384
PaeR7I	CTCGAG	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	372
PkrI	GCNGC	3 cut(s)	219, 253, 364
PspN4I	GGNNCC	1 cut(s)	15
PspXI	VCTCGAGB	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	345
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	3 cut(s)	218, 252, 363
Sau3AI	GATC	3 cut(s)	282, 345, 399
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	2 cut(s)	310, 415
SfcI	CTRYAG	1 cut(s)	129
Sfr274I	CTCGAG	1 cut(s)	241
SlaI	CTCGAG	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	291
SmlI	CTYRAG	2 cut(s)	205, 241
SmoI	CTYRAG	2 cut(s)	205, 241
SpeI	ACTAGT	1 cut(s)	197
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	2 cut(s)	251, 362
SspI	AATATT	1 cut(s)	266
SspMI	CTAG	4 cut(s)	198, 248, 359, 410
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	421
TaqI	TCGA	3 cut(s)	242, 322, 402
TasI	AATT	1 cut(s)	222
TauI	GCSGC	2 cut(s)	254, 365
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TseI	GCWGC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	17, 48
XceI	RCATGY	1 cut(s)	384
XhoI	CTCGAG	1 cut(s)	241
XspI	CTAG	4 cut(s)	198, 248, 359, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.