pycom02g07840

CAAX amino terminal protease family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0002247
Physical Location & Seq
Forward (+)
5514040 .. 5514909
870 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 696 bp
ATGAATATGCTAGATGTAACCATGCCTGATACTCTTACAGAAGAAAAGAAGAAGAAGGTCTTAGCAGCAGTTGATCAAGGAGACACGCTGATGAAAGCTTTGCAAGATGCAGTGCCGGAAGATGTTCGTGGAAAGCTAACATCTGCTGTTTCTGGAGCTCTGCATACTCAAGGCACAAACCTAAAGTTTGATCAACTTTTGGGTATTGCTCGGATTCCTGACATGTCTTCAGGTCTAAAGTCAAAGATCGAAGACAAGGTCATGGGAACATCAAGTTCAGAAGGGGTACAGAAAGACAATCGTTCATCAGATCTGTTGAAAAAGGATGATCTGGTGGACAGCTCAACTAACAAACTACCTGATGCAAACAAGCGTCCAGGGGGATTAGAATCAGAGGATCCTCCCTCAGAGGGATCAGAAAAGATTTCAAATCTGGACCAGTCTCAATCGTTGAGCAGTCAGGAAAGTGATATTTCTGATTCTGTTGGAAAGGACACCAGCGAATCAGGAAATAATTCTTCCAAAGAAAAGGCTCCTGAAGATCTTTCCAATAGTGAAAAGTTTTTAAATCTAGACCAGTCTCAATCGTTGAGCAGTCAGGAAAGTGATATTTCTGATTCTGTTGGAAAGGACACTAGCCAATCAGGAAATGACAAGTCTTCCAAGGAAAAGGCTCCTGAACGATCTTTCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

232

Amino Acids

24.73

Weight (kDa)

4.59

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7750 PF24930 1 - 55 1.3e-30 Domain of unknown function (DUF7750)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 392, 405, 421
AcuI CTGAAG 2 cut(s) 213, 558
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 2 cut(s) 319, 429
AjnI CCWGG 1 cut(s) 376
AloI GAACNNNNNNTCC 1 cut(s) 672
AluBI AGCT 4 cut(s) 98, 136, 158, 342
AluI AGCT 4 cut(s) 98, 136, 158, 342
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 3 cut(s) 75, 447, 585
AlwI GGATC 3 cut(s) 392, 405, 421
ApeKI GCWGC 1 cut(s) 65
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
Asp700I GAANNNNTTC 2 cut(s) 123, 514
AspS9I GGNCC 1 cut(s) 436
AvaII GGWCC 1 cut(s) 436
BamHI GGATCC 1 cut(s) 397
BanII GRGCYC 1 cut(s) 160
BbsI GAAGAC 3 cut(s) 219, 258, 651
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 378
BclI TGATCA 2 cut(s) 73, 190
BcoDI GTCTC 3 cut(s) 75, 447, 585
BfaI CTAG 3 cut(s) 11, 572, 636
BglII AGATCT 2 cut(s) 310, 541
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 436
BmiI GGNNCC 3 cut(s) 399, 534, 675
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 2 cut(s) 97, 352
BpiI GAAGAC 3 cut(s) 219, 258, 651
BpmI CTGGAG 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 388
BsaJI CCNNGG 2 cut(s) 377, 663
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse1I ACTGG 2 cut(s) 439, 577
Bse8I GATNNNNATC 1 cut(s) 388
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 2 cut(s) 377, 663
BseGI GGATG 1 cut(s) 331
BseJI GATNNNNATC 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 2 cut(s) 439, 577
BseXI GCAGC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 3 cut(s) 75, 447, 585
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 9 cut(s) 73, 190, 246, 310, 328, 397, 413, 541, 683
BspCNI CTCAG 1 cut(s) 419
BspLI GGNNCC 3 cut(s) 399, 534, 675
BspPI GGATC 3 cut(s) 392, 405, 421
BsrI ACTGG 2 cut(s) 439, 577
BssECI CCNNGG 2 cut(s) 377, 663
BssMI GATC 9 cut(s) 73, 190, 246, 310, 328, 397, 413, 541, 683
BssT1I CCWWGG 1 cut(s) 663
Bst2UI CCWGG 1 cut(s) 378
BstDEI CTNAG 2 cut(s) 61, 406
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 9 cut(s) 76, 193, 249, 313, 331, 400, 416, 544, 686
BstMAI GTCTC 3 cut(s) 75, 447, 585
BstMBI GATC 9 cut(s) 73, 190, 246, 310, 328, 397, 413, 541, 683
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 376
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 3 cut(s) 219, 258, 651
BstX2I RGATCY 3 cut(s) 310, 397, 541
BstYI RGATCY 3 cut(s) 310, 397, 541
BtsCI GGATG 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 436
CseI GACGC 1 cut(s) 362
Csp6I GTAC 1 cut(s) 287
CviAII CATG 3 cut(s) 22, 223, 262
CviJI RGCY 7 cut(s) 98, 136, 158, 342, 533, 639, 674
CviKI_1 RGCY 7 cut(s) 98, 136, 158, 342, 533, 639, 674
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 2 cut(s) 61, 406
DpnI GATC 9 cut(s) 75, 192, 248, 312, 330, 399, 415, 543, 685
DpnII GATC 9 cut(s) 73, 190, 246, 310, 328, 397, 413, 541, 683
DraI TTTAAA 1 cut(s) 567
Ecl136II GAGCTC 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 663
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 436
Eco53kI GAGCTC 1 cut(s) 158
Eco57I CTGAAG 2 cut(s) 213, 558
EcoICRI GAGCTC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 663
EcoT38I GRGCYC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 663
FaeI CATG 3 cut(s) 25, 226, 265
FaiI YATR 5 cut(s) 8, 23, 165, 224, 263
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FatI CATG 3 cut(s) 21, 222, 261
FbaI TGATCA 2 cut(s) 73, 190
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 3 cut(s) 11, 572, 636
GluI GCNGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 174
HapII CCGG 1 cut(s) 116
HgaI GACGC 1 cut(s) 362
Hin1II CATG 3 cut(s) 25, 226, 265
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 5 cut(s) 214, 389, 479, 503, 617
HpaII CCGG 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 8 cut(s) 213, 280, 310, 394, 409, 418, 478, 616
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 49, 275
HpyCH4V TGCA 4 cut(s) 103, 110, 163, 365
HpyF3I CTNAG 2 cut(s) 61, 406
Hsp92II CATG 3 cut(s) 25, 226, 265
Ksp22I TGATCA 2 cut(s) 73, 190
Kzo9I GATC 9 cut(s) 73, 190, 246, 310, 328, 397, 413, 541, 683
LmnI GCTCC 3 cut(s) 155, 538, 679
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 2 cut(s) 97, 352
MaeI CTAG 3 cut(s) 11, 572, 636
MaeIII GTNAC 1 cut(s) 16
MalI GATC 9 cut(s) 75, 192, 248, 312, 330, 399, 415, 543, 685
MboI GATC 9 cut(s) 73, 190, 246, 310, 328, 397, 413, 541, 683
MboII GAAGA 9 cut(s) 53, 61, 64, 131, 219, 263, 510, 551, 651
MflI RGATCY 3 cut(s) 310, 397, 541
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 1 cut(s) 514
MmeI TCCRAC 2 cut(s) 466, 604
MnlI CCTC 4 cut(s) 388, 403, 411, 415
MroXI GAANNNNTTC 2 cut(s) 123, 514
MseI TTAA 1 cut(s) 566
MslI CAYNNNNRTG 1 cut(s) 89
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 378
NdeII GATC 9 cut(s) 73, 190, 246, 310, 328, 397, 413, 541, 683
NlaIII CATG 3 cut(s) 25, 226, 265
NlaIV GGNNCC 3 cut(s) 399, 534, 675
NspI RCATGY 1 cut(s) 226
PciI ACATGT 1 cut(s) 222
PdmI GAANNNNTTC 2 cut(s) 123, 514
PfeI GAWTC 5 cut(s) 214, 389, 479, 503, 617
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 67
PscI ACATGT 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 3 cut(s) 399, 534, 675
PspPI GGNCC 1 cut(s) 436
PsuI RGATCY 3 cut(s) 310, 397, 541
PsyI GACNNNGTC 1 cut(s) 257
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 89
SacI GAGCTC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 566
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 9 cut(s) 73, 190, 246, 310, 328, 397, 413, 541, 683
Sau96I GGNCC 1 cut(s) 436
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 160
SetI ASST 9 cut(s) 60, 100, 138, 160, 183, 235, 261, 344, 361
SfaNI GCATC 2 cut(s) 97, 352
SinI GGWCC 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 1 cut(s) 514
SspMI CTAG 3 cut(s) 11, 572, 636
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 376
StyI CCWWGG 1 cut(s) 663
TaqI TCGA 1 cut(s) 249
TasI AATT 1 cut(s) 514
TfiI GAWTC 5 cut(s) 214, 389, 479, 503, 617
Tru1I TTAA 1 cut(s) 566
Tru9I TTAA 1 cut(s) 566
TscAI CASTG 1 cut(s) 117
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 3 cut(s) 17, 107, 294
TspRI CASTG 1 cut(s) 117
Tth111I GACNNNGTC 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 436
XbaI TCTAGA 1 cut(s) 571
XceI RCATGY 1 cut(s) 226
XmnI GAANNNNTTC 2 cut(s) 123, 514
XspI CTAG 3 cut(s) 11, 572, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.