Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0013506

Physical Location & Seq

Genomic Coordinates Reverse (-)

7686472 .. 7694283

Gene Structure 7812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGGATGGATTTTGGGATGTTGGGTTTTGGTGGGAATTCTTGTAGGATCATTGTATTGGTTTAACAAGGAGAAGAAGAACCAGAACAAGAAGGATAGGGAAATTCAAAAGGGTCAAGTTCCAAAAGGGAAGTTAGGTTGGCCCTTCATAGGAGAAACCCTTGACTTCATTGCTTGTGGCTACACCTCTCGACCTGTCAGCTTCATGGAAAAACGCAGATCTCTGTATGGAAAGGTGTTTAAGACTAACATATTGGGGACTCCTATCATAGTATCCACGGATGCTGAGGTGAACAAGGTGGTAATGCAAAACTATGGAAATACTTTCATTCCTGCCTATCCGAAATCAATTACAGAACTGATGGGAAAATATTCTATTCTCCAAACAAATGGAAGCCTTCATAAGAGAGTGCATGGACTCATCGCTGGGTTTCTGAAATCACCACAGTTCAAAGCTCGAATCACCGCCGACATCGAAAATTCAATCAAGCTCAACTTGGCCCTTTGGAGAGACATGCAGTCTCCTATTTACGTCCAAGATGAAACCCAAAAGATTACCTTTGAAGTACTGGTTAAAGTATTAATGAGCATTGATCCTGGTGAAGACTTAAACCTTCTCAAGAGAGAATTTGAAGAGTTCATCAAAGGATTAATTTGCATACCAATCAAGCTCCCTGGAACTAGGCTATATAAATCTCTCAAGGCTAGAGAGCGATTGTTGAAGATGGTGGGGAAGATATTAGACACGAAAAAGATGGCAATGGAAAATACAATTTGTGCTCAAAAAACAATTCCTGTCAAAGACGCAATGGACGTGCTGTTAGAAGTTGGTGACCAAAAGAACGAGACTCAAGGCCTGCCGTTGGATTTCATCACCGGAAATATAATAGAGATGATGATCCCAGGAGAGGAGACTGTTCCCATGGCCATGACCCTTGCCGTCAAATTCCTAAGTGACAGCCCTGTGGCGTTAGACAAATTACGGGAGGAGAACATGGAATTGAAGAGGCAGAAGAAGAAGAAGAAGATTGATTCCACGGAAAATTATGCATGGACTGATTACATGTCCTTGCCATTTACTCAAAATGTGATAAGTGAGACTCTTAGAATGGCAAATATCATCAATGCTGTTTGGAGAAAAGCTCAAAAGGATGTTGAAATCAAAGGTTATTTGATCCCAAAAGGGTGGTGTGTCTTGGCATCTTTTACTTCTGTTCACATGGATGAAGAAAACTACAAAAACCCATATCAGTTTGATCCATGGAGATGGGAGAAATTAGAAGCTGCTGTAAACTACAACACTAGTTTTACACCCTTTGGTGGAGGACAGAGGCTGTGCCCTGGTTTGGAGCTATCCAGGCTTGAATTATCAATCTTTCTTCATCATCTTGTCACCAATTATAGATGGGTTGCTGAGAAGGATGACATTGTTCACTTTCCAATGGTCAAGATGAAGAGGAAATTGCCCATTAAAGTCACGTCCATAAACACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009653 GO:0009791 GO:0009826 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010268 GO:0010817 GO:0016043 GO:0016049 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042445 GO:0042446 GO:0042592 GO:0042814 GO:0044238 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048443 GO:0048465 GO:0048466 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0055088 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

498

Amino Acids

56.98

Weight (kDa)

9.3

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	41 - 476	3.2e-56	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36380 AT4G36380
fragaria_vesca	FvH4_1g12330
malus_domestica	MD02G1137700.v1.1 MD15G1251500.v1.1
prunus_persica	Prupe.7G162900_v2.0.a1
pyrus_communis	pycom02g10900 pycom15g22160
rosa_chinensis	RchiOBHm_Chr2g0100151
rosa_laevigata	RLG00000016941
rosa_multiflora	Rmu_sc0018554.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142520
rosa_rugosa	Rorug02G0086100
rosa_samantha	Rh2AG135100 Rh2BG138500 Rh2CG140300 Rh2DG140500
rosa_wichuraiana	Rw2G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	465
AclWI	GGATC	5 cut(s)	55, 587, 892, 1168, 1250
AcoI	YGGCCR	1 cut(s)	924
AcsI	RAATTY	5 cut(s)	36, 102, 478, 626, 944
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	5 cut(s)	149, 862, 907, 1319, 1345
AflIII	ACRYGT	2 cut(s)	1062, 1488
AgsI	TTSAA	9 cut(s)	107, 451, 483, 563, 632, 721, 1003, 1157, 1364
AhdI	GACNNNNNGTC	1 cut(s)	517
AhlI	ACTAGT	1 cut(s)	1301
AjiI	CACGTC	2 cut(s)	814, 1479
AjnI	CCWGG	5 cut(s)	595, 673, 901, 1339, 1355
AluBI	AGCT	7 cut(s)	201, 455, 490, 670, 1142, 1283, 1351
AluI	AGCT	7 cut(s)	201, 455, 490, 670, 1142, 1283, 1351
Alw21I	GWGCWC	1 cut(s)	781
Alw26I	GTCTC	5 cut(s)	504, 525, 839, 905, 1091
AlwI	GGATC	5 cut(s)	55, 587, 892, 1168, 1250
AlwNI	CAGNNNCTG	1 cut(s)	1333
AoxI	GGCC	4 cut(s)	140, 498, 853, 924
ApeKI	GCWGC	1 cut(s)	1283
ApoI	RAATTY	5 cut(s)	36, 102, 478, 626, 944
AseI	ATTAAT	2 cut(s)	581, 650
Asp700I	GAANNNNTTC	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	141, 499
AsuHPI	GGTGA	7 cut(s)	301, 432, 454, 611, 842, 865, 1384
BaeGI	GKGCMC	1 cut(s)	1340
BalI	TGGCCA	1 cut(s)	926
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	1 cut(s)	781
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	1270
BccI	CCATC	5 cut(s)	355, 718, 748, 1260, 1398
BceAI	ACGGC	2 cut(s)	844, 923
BciT130I	CCWGG	5 cut(s)	597, 675, 903, 1341, 1357
BciVI	GTATCC	1 cut(s)	283
BcoDI	GTCTC	5 cut(s)	504, 525, 839, 905, 1091
BcuI	ACTAGT	1 cut(s)	1301
BfaI	CTAG	3 cut(s)	681, 705, 1302
BfuI	GTATCC	1 cut(s)	283
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	1 cut(s)	1284
BlsI	GCNGC	1 cut(s)	1285
BmcAI	AGTACT	1 cut(s)	567
Bme1390I	CCNGG	5 cut(s)	597, 675, 903, 1341, 1357
BmeRI	GACNNNNNGTC	1 cut(s)	517
BmgBI	CACGTC	2 cut(s)	814, 1479
BmgT120I	GGNCC	2 cut(s)	141, 499
BmrFI	CCNGG	5 cut(s)	597, 675, 903, 1341, 1357
BmsI	GCATC	2 cut(s)	271, 1208
BpiI	GAAGAC	1 cut(s)	609
BplI	GAGNNNNNCTC	2 cut(s)	1126, 1158
Bpu10I	CCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	3 cut(s)	602, 683, 834
BsaAI	YACGTR	1 cut(s)	1491
BsaBI	GATNNNNATC	1 cut(s)	896
BsaJI	CCNNGG	7 cut(s)	276, 673, 901, 921, 1035, 1259, 1339
BsaWI	WCCGGW	1 cut(s)	875
Bsc4I	CCNNNNNNNGG	5 cut(s)	149, 862, 907, 1319, 1345
Bse1I	ACTGG	1 cut(s)	573
Bse3DI	GCAATG	3 cut(s)	168, 765, 813
Bse8I	GATNNNNATC	1 cut(s)	896
BseBI	CCWGG	5 cut(s)	597, 675, 903, 1341, 1357
BseDI	CCNNGG	7 cut(s)	276, 673, 901, 921, 1035, 1259, 1339
BseGI	GGATG	6 cut(s)	11, 23, 286, 1156, 1228, 1426
BseJI	GATNNNNATC	1 cut(s)	896
BseLI	CCNNNNNNNGG	5 cut(s)	149, 862, 907, 1319, 1345
BseMI	GCAATG	3 cut(s)	168, 765, 813
BseMII	CTCAG	2 cut(s)	276, 1404
BseNI	ACTGG	1 cut(s)	573
BseRI	GAGGAG	2 cut(s)	923, 1001
BseSI	GKGCMC	1 cut(s)	1340
BseXI	GCAGC	1 cut(s)	1270
BseYI	CCCAGC	1 cut(s)	425
BshFI	GGCC	4 cut(s)	142, 500, 855, 926
BsiHKAI	GWGCWC	1 cut(s)	781
BsiSI	CCGG	1 cut(s)	876
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	5 cut(s)	149, 862, 907, 1319, 1345
BsmAI	GTCTC	5 cut(s)	504, 525, 839, 905, 1091
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	4 cut(s)	142, 500, 855, 926
Bsp1286I	GDGCHC	2 cut(s)	781, 1340
Bsp143I	GATC	6 cut(s)	47, 218, 592, 897, 1173, 1255
Bsp19I	CCATGG	2 cut(s)	921, 1259
BspACI	CCGC	1 cut(s)	465
BspANI	GGCC	4 cut(s)	142, 500, 855, 926
BspCNI	CTCAG	2 cut(s)	277, 1405
BspPI	GGATC	5 cut(s)	55, 587, 892, 1168, 1250
BsrDI	GCAATG	3 cut(s)	168, 765, 813
BsrI	ACTGG	1 cut(s)	573
BssECI	CCNNGG	7 cut(s)	276, 673, 901, 921, 1035, 1259, 1339
BssMI	GATC	6 cut(s)	47, 218, 592, 897, 1173, 1255
BssT1I	CCWWGG	2 cut(s)	921, 1259
Bst2UI	CCWGG	5 cut(s)	597, 675, 903, 1341, 1357
Bst4CI	ACNGT	2 cut(s)	447, 916
Bst6I	CTCTTC	3 cut(s)	627, 998, 1448
BstBAI	YACGTR	1 cut(s)	1491
BstC8I	GCNNGC	1 cut(s)	857
BstDEI	CTNAG	4 cut(s)	285, 950, 1103, 1413
BstDSI	CCRYGG	4 cut(s)	276, 921, 1035, 1259
BstEII	GGTNACC	1 cut(s)	830
BstF5I	GGATG	6 cut(s)	11, 23, 286, 1156, 1228, 1426
BstKTI	GATC	6 cut(s)	50, 221, 595, 900, 1176, 1258
BstMAI	GTCTC	5 cut(s)	504, 525, 839, 905, 1091
BstMBI	GATC	6 cut(s)	47, 218, 592, 897, 1173, 1255
BstMWI	GCNNNNNNNGC	1 cut(s)	1357
BstNI	CCWGG	5 cut(s)	597, 675, 903, 1341, 1357
BstNSI	RCATGY	2 cut(s)	517, 1066
BstPI	GGTNACC	1 cut(s)	830
BstSCI	CCNGG	5 cut(s)	595, 673, 901, 1339, 1355
BstSLI	GKGCMC	1 cut(s)	1340
BstV1I	GCAGC	1 cut(s)	1270
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	1 cut(s)	218
BstXI	CCANNNNNNTGG	3 cut(s)	389, 1185, 1266
BstYI	RGATCY	1 cut(s)	218
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	4 cut(s)	142, 500, 855, 926
BtgI	CCRYGG	4 cut(s)	276, 921, 1035, 1259
BtgZI	GCGATG	1 cut(s)	406
BtrI	CACGTC	2 cut(s)	814, 1479
BtsCI	GGATG	6 cut(s)	11, 23, 286, 1156, 1228, 1426
Cac8I	GCNNGC	1 cut(s)	857
CaiI	CAGNNNCTG	1 cut(s)	1333
Cfr13I	GGNCC	2 cut(s)	141, 499
CseI	GACGC	1 cut(s)	812
Csp6I	GTAC	1 cut(s)	566
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	4 cut(s)	285, 950, 1103, 1413
DpnI	GATC	6 cut(s)	49, 220, 594, 899, 1175, 1257
DpnII	GATC	6 cut(s)	47, 218, 592, 897, 1173, 1255
DriI	GACNNNNNGTC	1 cut(s)	517
EaeI	YGGCCR	1 cut(s)	924
Eam1104I	CTCTTC	3 cut(s)	627, 998, 1448
Eam1105I	GACNNNNNGTC	1 cut(s)	517
EarI	CTCTTC	3 cut(s)	627, 998, 1448
Eco130I	CCWWGG	2 cut(s)	921, 1259
Eco147I	AGGCCT	1 cut(s)	855
Eco91I	GGTNACC	1 cut(s)	830
EcoO65I	GGTNACC	1 cut(s)	830
EcoRI	GAATTC	1 cut(s)	36
EcoRII	CCWGG	5 cut(s)	595, 673, 901, 1339, 1355
EcoT14I	CCWWGG	2 cut(s)	921, 1259
EcoT22I	ATGCAT	1 cut(s)	1051
ErhI	CCWWGG	2 cut(s)	921, 1259
FalI	AAGNNNNNCTT	4 cut(s)	479, 511, 542, 574
FaqI	GGGAC	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	1284
FokI	GGATG	6 cut(s)	18, 30, 293, 1163, 1235, 1433
Fsp4HI	GCNGC	1 cut(s)	1284
FspBI	CTAG	3 cut(s)	681, 705, 1302
GluI	GCNGC	1 cut(s)	1284
GsaI	CCCAGC	1 cut(s)	429
HaeIII	GGCC	4 cut(s)	142, 500, 855, 926
HapII	CCGG	1 cut(s)	876
HgaI	GACGC	1 cut(s)	812
HinfI	GANTC	6 cut(s)	259, 417, 459, 847, 1031, 1099
HpaII	CCGG	1 cut(s)	876
HphI	GGTGA	7 cut(s)	301, 432, 454, 611, 842, 865, 1384
Hpy166II	GTNNAC	4 cut(s)	292, 1216, 1291, 1432
Hpy188I	TCNGA	2 cut(s)	342, 435
Hpy188III	TCNNGA	3 cut(s)	189, 619, 1447
Hpy8I	GTNNAC	4 cut(s)	292, 1216, 1291, 1432
HpyAV	CCTTC	5 cut(s)	85, 154, 407, 623, 1411
HpyCH4III	ACNGT	2 cut(s)	447, 916
HpyCH4IV	ACGT	4 cut(s)	531, 813, 1478, 1490
HpyCH4V	TGCA	5 cut(s)	307, 412, 517, 657, 1049
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1357
HpyF3I	CTNAG	4 cut(s)	285, 950, 1103, 1413
HpySE526I	ACGT	4 cut(s)	531, 813, 1478, 1490
Kzo9I	GATC	6 cut(s)	47, 218, 592, 897, 1173, 1255
LmnI	GCTCC	2 cut(s)	675, 1348
Lsp1109I	GCAGC	1 cut(s)	1270
LweI	GCATC	2 cut(s)	271, 1208
MaeI	CTAG	3 cut(s)	681, 705, 1302
MaeII	ACGT	4 cut(s)	531, 813, 1478, 1490
MaeIII	GTNAC	4 cut(s)	830, 953, 1390, 1474
MalI	GATC	6 cut(s)	49, 220, 594, 899, 1175, 1257
MboI	GATC	6 cut(s)	47, 218, 592, 897, 1173, 1255
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	781, 1340
MlsI	TGGCCA	1 cut(s)	926
MluNI	TGGCCA	1 cut(s)	926
MlyI	GAGTC	4 cut(s)	253, 411, 841, 1093
MmeI	TCCRAC	1 cut(s)	843
MnlI	CCTC	8 cut(s)	196, 280, 901, 979, 999, 1316, 1323, 1449
Mox20I	TGGCCA	1 cut(s)	926
Mph1103I	ATGCAT	1 cut(s)	1051
MroXI	GAANNNNTTC	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	926
MseI	TTAA	7 cut(s)	63, 240, 573, 581, 608, 650, 1470
MslI	CAYNNNNRTG	3 cut(s)	926, 1221, 1264
Msp20I	TGGCCA	1 cut(s)	926
MspI	CCGG	1 cut(s)	876
MspR9I	CCNGG	5 cut(s)	597, 675, 903, 1341, 1357
MvaI	CCWGG	5 cut(s)	597, 675, 903, 1341, 1357
MwoI	GCNNNNNNNGC	1 cut(s)	1357
NcoI	CCATGG	2 cut(s)	921, 1259
NdeII	GATC	6 cut(s)	47, 218, 592, 897, 1173, 1255
NmuCI	GTSAC	4 cut(s)	830, 953, 1390, 1474
NsiI	ATGCAT	1 cut(s)	1051
NspI	RCATGY	2 cut(s)	517, 1066
PceI	AGGCCT	1 cut(s)	855
PciI	ACATGT	1 cut(s)	1062
PcsI	WCGNNNNNNNCGW	1 cut(s)	810
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	2 cut(s)	459, 1031
PkrI	GCNGC	1 cut(s)	1285
PleI	GAGTC	4 cut(s)	253, 411, 841, 1093
PpsI	GAGTC	4 cut(s)	253, 411, 841, 1093
Ppu21I	YACGTR	1 cut(s)	1491
PscI	ACATGT	1 cut(s)	1062
PshBI	ATTAAT	2 cut(s)	581, 650
Psp6I	CCWGG	5 cut(s)	595, 673, 901, 1339, 1355
PspEI	GGTNACC	1 cut(s)	830
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	5 cut(s)	595, 673, 901, 1339, 1355
PspPI	GGNCC	2 cut(s)	141, 499
PstNI	CAGNNNCTG	1 cut(s)	1333
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
RseI	CAYNNNNRTG	3 cut(s)	926, 1221, 1264
SaqAI	TTAA	7 cut(s)	63, 240, 573, 581, 608, 650, 1470
SatI	GCNGC	1 cut(s)	1284
Sau3AI	GATC	6 cut(s)	47, 218, 592, 897, 1173, 1255
Sau96I	GGNCC	2 cut(s)	141, 499
ScaI	AGTACT	1 cut(s)	567
SchI	GAGTC	4 cut(s)	253, 411, 841, 1093
ScrFI	CCNGG	5 cut(s)	597, 675, 903, 1341, 1357
SduI	GDGCHC	2 cut(s)	781, 1340
SfaNI	GCATC	2 cut(s)	271, 1208
SmiMI	CAYNNNNRTG	3 cut(s)	926, 1221, 1264
SmlI	CTYRAG	3 cut(s)	617, 698, 849
SmoI	CTYRAG	3 cut(s)	617, 698, 849
SpeI	ACTAGT	1 cut(s)	1301
SseBI	AGGCCT	1 cut(s)	855
SsiI	CCGC	1 cut(s)	465
SspI	AATATT	1 cut(s)	371
SspMI	CTAG	3 cut(s)	681, 705, 1302
StuI	AGGCCT	1 cut(s)	855
StyD4I	CCNGG	5 cut(s)	595, 673, 901, 1339, 1355
StyI	CCWWGG	2 cut(s)	921, 1259
TaaI	ACNGT	2 cut(s)	447, 916
TaiI	ACGT	4 cut(s)	534, 816, 1481, 1493
TaqI	TCGA	3 cut(s)	190, 457, 474
TatI	WGTACW	1 cut(s)	565
TfiI	GAWTC	2 cut(s)	459, 1031
Tru1I	TTAA	7 cut(s)	63, 240, 573, 581, 608, 650, 1470
Tru9I	TTAA	7 cut(s)	63, 240, 573, 581, 608, 650, 1470
TseFI	GTSAC	4 cut(s)	830, 953, 1390, 1474
TseI	GCWGC	1 cut(s)	1283
Tsp45I	GTSAC	4 cut(s)	830, 953, 1390, 1474
TspGWI	ACGGA	2 cut(s)	293, 1052
VspI	ATTAAT	2 cut(s)	581, 650
XapI	RAATTY	5 cut(s)	36, 102, 478, 626, 944
XceI	RCATGY	2 cut(s)	517, 1066
XmnI	GAANNNNTTC	1 cut(s)	370
XspI	CTAG	3 cut(s)	681, 705, 1302
ZrmI	AGTACT	1 cut(s)	567
Zsp2I	ATGCAT	1 cut(s)	1051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.