pycom02g14640

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013593
Physical Location & Seq
Forward (+)
11232650 .. 11234178
1529 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g14640.1

Sequence Viewer

Length: 1209 bp
ATGCAATTTTGCGAGCAGATGGATGCAAAAGGGCTTCTGAATTATGCTACTGAGAATTATAAAAAACTAAATGTTATTCGTGAGGAACTTTCTGTTGCACTAGAAAGTGCAGGTGAACCAGCACGATTGGTGCTGGATTCACTGGAGGGGTTTTACCCTCCGGATGAGACTAACCAACCAGAGGGTAAGAAGGATGCTGCCCTTCAGGGCATGCGCAGATCCTGTCTAATGTTTATGGAAGCCATGACTGCCTTATTGGCAAAGGTTGACCCAGGTGCTGATCACCTTTTGAACCCTGACACCAAGCAGCAAGCCAAAGCAATTGCTGATGAGTGGAAGCCTAAGTTGGCTAGTGCCGGCACTGATGCTGCCAATGGAATTTCATTGGAAGCAGAGGCATTCTTGCAGCTCCTCGCTACTTTTAGGATTGCTTCTGAGTTTGATGAAGACGAACTCTGCAAGTTTGTTCTTGCAGTTGCTCACCGCAGGCAGACACCTGAGCTCTGCCGCTCTCTTGGTTTAACACACAAAATGCCAGGTCTTGTTGAATCAATGGTCAGCAGTGGGAAACAAATTGATGCTGTACGTTTTATTCATGTCTTCCAGCTTACTGAAAGTTATCCCCTTGTGCCACTTCTAAAGACGTACTTGAAAGACTTGAGGAGAAATTCACAAGGGGACAACACAGGAGATGGTACTGGTGCACAGGATGATGTTAATGCAAAAGAGCTTGCTGCACTGAAGGCCGTAATAAGGTGCGTTCAAGAGTTCAAGCTTGAGGCTGACTACCCTCTTGATCCACTACAGAAAAGGGTCCATCAACTAGAGCGATCCAAAGCTGATAAGAAGAGAAGTAATGAATCTAAACGTCAACAGCAAAAGAAGCAAAAAATCAGTGGAAGATGGCGTGGTTACCGTGGGCCAGGTGTTGCTGCAACCTCTGCCCCTGCTGCTGCTAGGCACGGGCAACCTGTTTTTGGTGATAGGGCGGGATATGGTGGGATATTGGAGAGGTATGCCCAGCGTCCACTCACATACGATTACCAAGTTCCCAGCCAGCCTGCTTATGTTCCACAAGCTAATGATCAAAGGTTATATTACTACCCCCAGGACGACAGAGTCAAACCAGCCCCTTATAATGCTACTCCATCCAATTATGGCGGTTACGCTGGCAGTGGAATGCAGTCTCAACGCCAGCCGTACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

403

Amino Acids

44.77

Weight (kDa)

8.38

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 2 - 285 2e-101 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013593)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17030 FvH4_1g17030 FvH4_1g17030 FvH4_1g17030 FvH4_1g17030
malus_domestica MD02G1180500.v1.1
prunus_persica Prupe.6G225800_v2.0.a1
pyrus_communis pycom02g14640
rosa_chinensis RchiOBHm_Chr2g0107191
rosa_laevigata RLG00000017558
rosa_multiflora Rmu_co8250165.1_g000001
rosa_roxburghii Rroxscaffold_2G00136560
rosa_rugosa Rorug02G0140600
rosa_samantha Rh2AG191400 Rh2BG203400 Rh2CG196600 Rh2DG198700
rosa_wichuraiana Rw2G015130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 60, 1137
AarI CACCTGC 1 cut(s) 101
AasI GACNNNNNNGTC 1 cut(s) 1118
Acc16I TGCGCA 1 cut(s) 215
Acc36I ACCTGC 1 cut(s) 101
AccBSI CCGCTC 1 cut(s) 510
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 4 cut(s) 484, 508, 989, 1161
AclWI GGATC 3 cut(s) 213, 791, 825
AcsI RAATTY 2 cut(s) 378, 667
AcuI CTGAAG 2 cut(s) 188, 761
AfaI GTAC 4 cut(s) 585, 647, 697, 1202
AfiI CCNNNNNNNGG 3 cut(s) 181, 753, 977
AflIII ACRYGT 1 cut(s) 1203
AgsI TTSAA 5 cut(s) 292, 548, 652, 764, 772
AjnI CCWGG 4 cut(s) 271, 535, 922, 1107
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 7 cut(s) 409, 502, 607, 730, 775, 839, 1079
AluI AGCT 7 cut(s) 409, 502, 607, 730, 775, 839, 1079
Alw21I GWGCWC 2 cut(s) 504, 706
Alw26I GTCTC 2 cut(s) 161, 1191
Alw44I GTGCAC 1 cut(s) 702
AlwI GGATC 3 cut(s) 213, 791, 825
AlwNI CAGNNNCTG 2 cut(s) 222, 278
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 2 cut(s) 744, 920
ApaLI GTGCAC 1 cut(s) 702
ApeKI GCWGC 8 cut(s) 197, 307, 368, 406, 734, 932, 950, 953
ApoI RAATTY 2 cut(s) 378, 667
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 814, 920
AsuHPI GGTGA 4 cut(s) 125, 275, 473, 992
AvaII GGWCC 1 cut(s) 814
BaeGI GKGCMC 1 cut(s) 706
BanII GRGCYC 1 cut(s) 504
BbsI GAAGAC 2 cut(s) 453, 592
Bbv12I GWGCWC 2 cut(s) 504, 706
BbvI GCAGC 8 cut(s) 184, 319, 355, 418, 721, 919, 937, 940
BccI CCATC 5 cut(s) 13, 686, 825, 897, 1156
BceAI ACGGC 2 cut(s) 731, 1183
BciT130I CCWGG 4 cut(s) 273, 537, 924, 1109
BclI TGATCA 2 cut(s) 280, 1084
BcoDI GTCTC 2 cut(s) 161, 1191
BfaI CTAG 4 cut(s) 101, 351, 824, 957
BfmI CTRYAG 1 cut(s) 803
BfuAI ACCTGC 1 cut(s) 101
BglI GCCNNNNNGGC 1 cut(s) 257
BisI GCNGC 9 cut(s) 198, 308, 369, 407, 508, 735, 933, 951, 954
BlsI GCNGC 9 cut(s) 199, 309, 370, 408, 509, 736, 934, 952, 955
Bme1390I CCNGG 4 cut(s) 273, 537, 924, 1109
Bme18I GGWCC 1 cut(s) 814
BmgT120I GGNCC 2 cut(s) 814, 920
BmiI GGNNCC 1 cut(s) 815
BmrFI CCNGG 4 cut(s) 273, 537, 924, 1109
BmsI GCATC 4 cut(s) 13, 184, 355, 568
BpiI GAAGAC 2 cut(s) 453, 592
BpmI CTGGAG 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 498
BpuEI CTTGAG 2 cut(s) 679, 797
BsaJI CCNNGG 3 cut(s) 271, 916, 1107
BsaWI WCCGGW 1 cut(s) 160
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 753, 977
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 2 cut(s) 147, 703
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 4 cut(s) 273, 537, 924, 1109
BseDI CCNNGG 3 cut(s) 271, 916, 1107
BseGI GGATG 5 cut(s) 28, 169, 199, 715, 1148
BseLI CCNNNNNNNGG 3 cut(s) 181, 753, 977
BseMII CTCAG 3 cut(s) 42, 426, 489
BseNI ACTGG 2 cut(s) 147, 703
BseRI GAGGAG 2 cut(s) 401, 676
BseSI GKGCMC 1 cut(s) 706
BseXI GCAGC 8 cut(s) 184, 319, 355, 418, 721, 919, 937, 940
BseYI CCCAGC 2 cut(s) 1020, 1052
BsgI GTGCAG 2 cut(s) 129, 720
BshFI GGCC 2 cut(s) 746, 922
BsiHKAI GWGCWC 2 cut(s) 504, 706
BsiSI CCGG 2 cut(s) 161, 357
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 3 cut(s) 181, 753, 977
BsmAI GTCTC 2 cut(s) 161, 1191
BsmFI GGGAC 1 cut(s) 692
BsmI GAATGC 2 cut(s) 398, 1185
BsnI GGCC 2 cut(s) 746, 922
Bsp1286I GDGCHC 2 cut(s) 504, 706
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 5 cut(s) 218, 280, 796, 830, 1084
BspACI CCGC 4 cut(s) 484, 508, 989, 1161
BspANI GGCC 2 cut(s) 746, 922
BspCNI CTCAG 3 cut(s) 43, 427, 490
BspEI TCCGGA 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 815
BspMI ACCTGC 1 cut(s) 101
BspPI GGATC 3 cut(s) 213, 791, 825
BsrBI CCGCTC 1 cut(s) 510
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 2 cut(s) 147, 703
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 3 cut(s) 271, 916, 1107
BssMI GATC 5 cut(s) 218, 280, 796, 830, 1084
Bst2UI CCWGG 4 cut(s) 273, 537, 924, 1109
Bst4CI ACNGT 1 cut(s) 917
Bst6I CTCTTC 1 cut(s) 842
BstAPI GCANNNNNTGC 1 cut(s) 941
BstDEI CTNAG 4 cut(s) 51, 342, 435, 498
BstDSI CCRYGG 1 cut(s) 916
BstEII GGTNACC 1 cut(s) 911
BstF5I GGATG 5 cut(s) 28, 169, 199, 715, 1148
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 5 cut(s) 221, 283, 799, 833, 1087
BstMAI GTCTC 2 cut(s) 161, 1191
BstMBI GATC 5 cut(s) 218, 280, 796, 830, 1084
BstMWI GCNNNNNNNGC 6 cut(s) 248, 257, 743, 883, 941, 950
BstNI CCWGG 4 cut(s) 273, 537, 924, 1109
BstNSI RCATGY 2 cut(s) 214, 1207
BstPI GGTNACC 1 cut(s) 911
BstSCI CCNGG 4 cut(s) 271, 535, 922, 1107
BstSFI CTRYAG 1 cut(s) 803
BstSLI GKGCMC 1 cut(s) 706
BstV1I GCAGC 8 cut(s) 184, 319, 355, 418, 721, 919, 937, 940
BstV2I GAAGAC 2 cut(s) 453, 592
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuRI GGCC 2 cut(s) 746, 922
BtgI CCRYGG 1 cut(s) 916
BtsCI GGATG 5 cut(s) 28, 169, 199, 715, 1148
BtsI GCAGTG 2 cut(s) 568, 1180
BtsIMutI CAGTG 6 cut(s) 140, 360, 568, 737, 901, 1180
BveI ACCTGC 1 cut(s) 101
CaiI CAGNNNCTG 2 cut(s) 222, 278
CfoI GCGC 1 cut(s) 216
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 2 cut(s) 814, 920
CseI GACGC 1 cut(s) 1013
Csp6I GTAC 4 cut(s) 584, 646, 696, 1201
CviAII CATG 4 cut(s) 211, 244, 596, 1204
CviQI GTAC 4 cut(s) 584, 646, 696, 1201
DdeI CTNAG 4 cut(s) 51, 342, 435, 498
DpnI GATC 5 cut(s) 220, 282, 798, 832, 1086
DpnII GATC 5 cut(s) 218, 280, 796, 830, 1084
DrdI GACNNNNNNGTC 1 cut(s) 1118
DseDI GACNNNNNNGTC 1 cut(s) 1118
Eam1104I CTCTTC 1 cut(s) 842
EarI CTCTTC 1 cut(s) 842
Ecl136II GAGCTC 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 504
Eco47I GGWCC 1 cut(s) 814
Eco53kI GAGCTC 1 cut(s) 502
Eco57I CTGAAG 2 cut(s) 188, 761
Eco91I GGTNACC 1 cut(s) 911
EcoICRI GAGCTC 1 cut(s) 502
EcoO65I GGTNACC 1 cut(s) 911
EcoRII CCWGG 4 cut(s) 271, 535, 922, 1107
EcoT38I GRGCYC 1 cut(s) 504
FaeI CATG 4 cut(s) 214, 247, 599, 1207
FalI AAGNNNNNCTT 2 cut(s) 632, 664
FaqI GGGAC 1 cut(s) 692
FatI CATG 4 cut(s) 210, 243, 595, 1203
FauI CCCGC 1 cut(s) 982
FbaI TGATCA 2 cut(s) 280, 1084
Fnu4HI GCNGC 9 cut(s) 198, 308, 369, 407, 508, 735, 933, 951, 954
FokI GGATG 5 cut(s) 35, 176, 206, 722, 1135
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 9 cut(s) 198, 308, 369, 407, 508, 735, 933, 951, 954
FspBI CTAG 4 cut(s) 101, 351, 824, 957
FspI TGCGCA 1 cut(s) 215
GlaI GCGC 1 cut(s) 215
GluI GCNGC 9 cut(s) 198, 308, 369, 407, 508, 735, 933, 951, 954
GsaI CCCAGC 2 cut(s) 1024, 1056
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 2 cut(s) 746, 922
HapII CCGG 2 cut(s) 161, 357
HgaI GACGC 1 cut(s) 1013
HhaI GCGC 1 cut(s) 216
Hin1II CATG 4 cut(s) 214, 247, 599, 1207
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HincII GTYRAC 2 cut(s) 268, 872
HindII GTYRAC 2 cut(s) 268, 872
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 4 cut(s) 137, 548, 860, 1119
HpaII CCGG 2 cut(s) 161, 357
HphI GGTGA 4 cut(s) 125, 275, 473, 992
Hpy166II GTNNAC 5 cut(s) 116, 268, 704, 872, 1028
Hpy188I TCNGA 2 cut(s) 39, 436
Hpy188III TCNNGA 4 cut(s) 80, 161, 764, 794
Hpy8I GTNNAC 5 cut(s) 116, 268, 704, 872, 1028
HpyAV CCTTC 3 cut(s) 184, 212, 736
HpyCH4III ACNGT 1 cut(s) 917
HpyCH4IV ACGT 3 cut(s) 586, 644, 868
HpyF10VI GCNNNNNNNGC 6 cut(s) 248, 257, 743, 883, 941, 950
HpyF3I CTNAG 4 cut(s) 51, 342, 435, 498
HpySE526I ACGT 3 cut(s) 586, 644, 868
Hsp92II CATG 4 cut(s) 214, 247, 599, 1207
HspAI GCGC 1 cut(s) 214
Kpn2I TCCGGA 1 cut(s) 160
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Ksp22I TGATCA 2 cut(s) 280, 1084
Kzo9I GATC 5 cut(s) 218, 280, 796, 830, 1084
LmnI GCTCC 1 cut(s) 414
Lsp1109I GCAGC 8 cut(s) 184, 319, 355, 418, 721, 919, 937, 940
LweI GCATC 4 cut(s) 13, 184, 355, 568
MaeI CTAG 4 cut(s) 101, 351, 824, 957
MaeII ACGT 3 cut(s) 586, 644, 868
MaeIII GTNAC 2 cut(s) 911, 1163
MalI GATC 5 cut(s) 220, 282, 798, 832, 1086
MbiI CCGCTC 1 cut(s) 510
MboI GATC 5 cut(s) 218, 280, 796, 830, 1084
MboII GAAGA 4 cut(s) 458, 592, 859, 912
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 218
MhlI GDGCHC 2 cut(s) 504, 706
MluCI AATT 8 cut(s) 5, 40, 55, 321, 378, 573, 667, 1153
MlyI GAGTC 1 cut(s) 1128
MroI TCCGGA 1 cut(s) 160
MroNI GCCGGC 1 cut(s) 356
MseI TTAA 2 cut(s) 521, 717
MspI CCGG 2 cut(s) 161, 357
MspR9I CCNGG 4 cut(s) 273, 537, 924, 1109
MunI CAATTG 1 cut(s) 321
Mva1269I GAATGC 2 cut(s) 398, 1185
MvaI CCWGG 4 cut(s) 273, 537, 924, 1109
MwoI GCNNNNNNNGC 6 cut(s) 248, 257, 743, 883, 941, 950
NaeI GCCGGC 1 cut(s) 358
NdeII GATC 5 cut(s) 218, 280, 796, 830, 1084
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 4 cut(s) 214, 247, 599, 1207
NlaIV GGNNCC 1 cut(s) 815
NsbI TGCGCA 1 cut(s) 215
NspI RCATGY 2 cut(s) 214, 1207
PaeI GCATGC 1 cut(s) 214
PaqCI CACCTGC 1 cut(s) 101
PciI ACATGT 1 cut(s) 1203
PctI GAATGC 2 cut(s) 398, 1185
PdiI GCCGGC 1 cut(s) 358
PfeI GAWTC 3 cut(s) 137, 548, 860
PflFI GACNNNGTC 1 cut(s) 1118
PkrI GCNGC 9 cut(s) 199, 309, 370, 408, 509, 736, 934, 952, 955
PleI GAGTC 1 cut(s) 1127
PpsI GAGTC 1 cut(s) 1127
PscI ACATGT 1 cut(s) 1203
PsiI TTATAA 2 cut(s) 60, 1137
Psp124BI GAGCTC 1 cut(s) 504
Psp6I CCWGG 4 cut(s) 271, 535, 922, 1107
PspEI GGTNACC 1 cut(s) 911
PspFI CCCAGC 2 cut(s) 1020, 1052
PspGI CCWGG 4 cut(s) 271, 535, 922, 1107
PspN4I GGNNCC 1 cut(s) 815
PspPI GGNCC 2 cut(s) 814, 920
PstNI CAGNNNCTG 2 cut(s) 222, 278
PsuI RGATCY 1 cut(s) 218
PsyI GACNNNGTC 1 cut(s) 1118
RsaI GTAC 4 cut(s) 585, 647, 697, 1202
RsaNI GTAC 4 cut(s) 584, 646, 696, 1201
SacI GAGCTC 1 cut(s) 504
SaqAI TTAA 2 cut(s) 521, 717
SatI GCNGC 9 cut(s) 198, 308, 369, 407, 508, 735, 933, 951, 954
Sau3AI GATC 5 cut(s) 218, 280, 796, 830, 1084
Sau96I GGNCC 2 cut(s) 814, 920
SchI GAGTC 1 cut(s) 1128
ScrFI CCNGG 4 cut(s) 273, 537, 924, 1109
SduI GDGCHC 2 cut(s) 504, 706
SfaNI GCATC 4 cut(s) 13, 184, 355, 568
SfcI CTRYAG 1 cut(s) 803
SinI GGWCC 1 cut(s) 814
SmlI CTYRAG 2 cut(s) 658, 776
SmoI CTYRAG 2 cut(s) 658, 776
SphI GCATGC 1 cut(s) 214
Sse9I AATT 8 cut(s) 5, 40, 55, 321, 378, 573, 667, 1153
SsiI CCGC 4 cut(s) 484, 508, 989, 1161
SspMI CTAG 4 cut(s) 101, 351, 824, 957
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 4 cut(s) 271, 535, 922, 1107
TaaI ACNGT 1 cut(s) 917
TaiI ACGT 3 cut(s) 589, 647, 871
TasI AATT 8 cut(s) 5, 40, 55, 321, 378, 573, 667, 1153
TauI GCSGC 1 cut(s) 510
TfiI GAWTC 3 cut(s) 137, 548, 860
Tru1I TTAA 2 cut(s) 521, 717
Tru9I TTAA 2 cut(s) 521, 717
TscAI CASTG 6 cut(s) 147, 367, 568, 744, 901, 1180
TseI GCWGC 8 cut(s) 197, 307, 368, 406, 734, 932, 950, 953
TspDTI ATGAA 4 cut(s) 372, 459, 584, 873
TspRI CASTG 6 cut(s) 147, 367, 568, 744, 901, 1180
Tth111I GACNNNGTC 1 cut(s) 1118
VneI GTGCAC 1 cut(s) 702
VpaK11BI GGWCC 1 cut(s) 814
XapI RAATTY 2 cut(s) 378, 667
XceI RCATGY 2 cut(s) 214, 1207
XspI CTAG 4 cut(s) 101, 351, 824, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.