Rmu_co8250165.1_g000001

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8250165.1
OG0013593
Physical Location & Seq
Forward (+)
1 .. 786
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8250165.1_g000001.1.cds

Sequence Viewer

Length: 786 bp
ctggatcgggtgcaggagctaaaagatgcagcagtcgctgctattgcagaggcccgagacattcaccagtcaagaaattcggaacccatgaatgatgggactaacaaagacagcaaggtaagcagctcacttggtgatacaaattcaccacaggaagatattccaactaaaaaaggtgataatgctaagggtatggctagtgacgttaagccacgcccagaactgaggcaattttgtgagcagatggatgccaaagggcttctgaattatattgctgagaatcataaaaaactaaatgttgctcgtcaggaacttactattgcactagaaagtgcaagtgaaccagcgcaattggtgctggattcactggaggggttttaccctcttgatgaaactaaccaaccagagggtaagaaggatcctgtccttcggggtaagcgtagatcctgtctcatgcttatggaatccttgaccaccttagcctcaaaggctgatcgagttgctgatcaccttttgaaccctgagaccaagcagcaagccaaagcaattgctgatgagtggaggcctaagttgtttagtggagctattgacgctgccaatggaatttcattggaagcagaggcattcttgcagcttcttgcaacttttaggattgcttctgagtttgacgaagaagaactctgcaaggttgttcttgcagcagttgctcaccgcaggcagacacctgagctctgccgttcccttggtttaacacacaaaatgccaggttggtcatcctttacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

261

Amino Acids

28.78

Weight (kDa)

5.41

Isoelectric Point (pI)

52.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013593)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17030 FvH4_1g17030 FvH4_1g17030 FvH4_1g17030 FvH4_1g17030
malus_domestica MD02G1180500.v1.1
prunus_persica Prupe.6G225800_v2.0.a1
pyrus_communis pycom02g14640
rosa_chinensis RchiOBHm_Chr2g0107191
rosa_laevigata RLG00000017558
rosa_multiflora Rmu_co8250165.1_g000001
rosa_roxburghii Rroxscaffold_2G00136560
rosa_rugosa Rorug02G0140600
rosa_samantha Rh2AG191400 Rh2BG203400 Rh2CG196600 Rh2DG198700
rosa_wichuraiana Rw2G015130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 712
AclWI GGATC 4 cut(s) 12, 413, 426, 438
AcsI RAATTY 3 cut(s) 76, 142, 603
AdeI CACNNNGTG 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 406
AgsI TTSAA 1 cut(s) 517
AjnI CCWGG 1 cut(s) 763
AluBI AGCT 5 cut(s) 19, 126, 584, 634, 730
AluI AGCT 5 cut(s) 19, 126, 584, 634, 730
Alw21I GWGCWC 1 cut(s) 732
Alw26I GTCTC 3 cut(s) 51, 455, 518
AlwI GGATC 4 cut(s) 12, 413, 426, 438
AlwNI CAGNNNCTG 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 54
AoxI GGCC 2 cut(s) 51, 563
ApeKI GCWGC 7 cut(s) 29, 38, 123, 532, 593, 631, 698
ApoI RAATTY 3 cut(s) 76, 142, 603
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 6 cut(s) 56, 138, 146, 188, 500, 701
AvaI CYCGRG 1 cut(s) 54
BamHI GGATCC 1 cut(s) 418
BanII GRGCYC 1 cut(s) 732
Bbv12I GWGCWC 1 cut(s) 732
BbvI GCAGC 7 cut(s) 25, 41, 135, 544, 580, 643, 710
BccI CCATC 2 cut(s) 89, 238
BceAI ACGGC 1 cut(s) 720
BciT130I CCWGG 1 cut(s) 765
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 3 cut(s) 51, 455, 518
BfaI CTAG 2 cut(s) 198, 326
BglI GCCNNNNNGGC 1 cut(s) 488
BisI GCNGC 7 cut(s) 30, 39, 124, 533, 594, 632, 699
BlsI GCNGC 7 cut(s) 31, 40, 125, 534, 595, 633, 700
Bme1390I CCNGG 1 cut(s) 765
BmeT110I CYCGRG 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 84, 420
BmrFI CCNGG 1 cut(s) 765
BmsI GCATC 2 cut(s) 16, 238
BpmI CTGGAG 1 cut(s) 389
Bpu10I CCTNAGC 3 cut(s) 186, 478, 726
BsaI GGTCTC 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 742
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse1I ACTGG 2 cut(s) 67, 372
BseBI CCWGG 1 cut(s) 765
BseDI CCNNGG 1 cut(s) 742
BseGI GGATG 2 cut(s) 253, 773
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMII CTCAG 5 cut(s) 215, 267, 513, 651, 717
BseNI ACTGG 2 cut(s) 67, 372
BseXI GCAGC 7 cut(s) 25, 41, 135, 544, 580, 643, 710
BsgI GTGCAG 1 cut(s) 32
BshFI GGCC 2 cut(s) 53, 565
BsiHKAI GWGCWC 1 cut(s) 732
BsiHKCI CYCGRG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 406
BsmAI GTCTC 3 cut(s) 51, 455, 518
BsmFI GGGAC 1 cut(s) 112
BsmI GAATGC 1 cut(s) 623
BsnI GGCC 2 cut(s) 53, 565
Bso31I GGTCTC 1 cut(s) 518
BsoBI CYCGRG 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 732
Bsp143I GATC 5 cut(s) 4, 418, 443, 493, 505
BspACI CCGC 1 cut(s) 712
BspANI GGCC 2 cut(s) 53, 565
BspCNI CTCAG 5 cut(s) 216, 268, 514, 652, 718
BspLI GGNNCC 2 cut(s) 84, 420
BspPI GGATC 4 cut(s) 12, 413, 426, 438
BspTNI GGTCTC 1 cut(s) 518
BsrI ACTGG 2 cut(s) 67, 372
BssECI CCNNGG 1 cut(s) 742
BssMI GATC 5 cut(s) 4, 418, 443, 493, 505
BssT1I CCWWGG 1 cut(s) 742
Bst2UI CCWGG 1 cut(s) 765
BstAPI GCANNNNNTGC 3 cut(s) 38, 355, 704
BstC8I GCNNGC 2 cut(s) 537, 716
BstDEI CTNAG 8 cut(s) 186, 224, 276, 478, 522, 567, 660, 726
BstF5I GGATG 2 cut(s) 253, 773
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 5 cut(s) 7, 421, 446, 496, 508
BstMAI GTCTC 3 cut(s) 51, 455, 518
BstMBI GATC 5 cut(s) 4, 418, 443, 493, 505
BstMWI GCNNNNNNNGC 8 cut(s) 35, 38, 44, 120, 355, 488, 590, 704
BstNI CCWGG 1 cut(s) 765
BstSCI CCNGG 1 cut(s) 763
BstV1I GCAGC 7 cut(s) 25, 41, 135, 544, 580, 643, 710
BstX2I RGATCY 2 cut(s) 418, 443
BstYI RGATCY 2 cut(s) 418, 443
BsuRI GGCC 2 cut(s) 53, 565
BtsCI GGATG 2 cut(s) 253, 773
BtsIMutI CAGTG 1 cut(s) 365
Cac8I GCNNGC 2 cut(s) 537, 716
CaiI CAGNNNCTG 1 cut(s) 38
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 52
CseI GACGC 1 cut(s) 599
CviAII CATG 2 cut(s) 88, 454
DdeI CTNAG 8 cut(s) 186, 224, 276, 478, 522, 567, 660, 726
DpnI GATC 5 cut(s) 6, 420, 445, 495, 507
DpnII GATC 5 cut(s) 4, 418, 443, 493, 505
DraIII CACNNNGTG 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 730
Eco130I CCWWGG 1 cut(s) 742
Eco147I AGGCCT 1 cut(s) 565
Eco24I GRGCYC 1 cut(s) 732
Eco31I GGTCTC 1 cut(s) 518
Eco53kI GAGCTC 1 cut(s) 730
Eco88I CYCGRG 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 730
EcoRII CCWGG 1 cut(s) 763
EcoT14I CCWWGG 1 cut(s) 742
EcoT38I GRGCYC 1 cut(s) 732
ErhI CCWWGG 1 cut(s) 742
FaeI CATG 2 cut(s) 91, 457
FaiI YATR 6 cut(s) 89, 194, 270, 285, 455, 461
FaqI GGGAC 1 cut(s) 112
FatI CATG 2 cut(s) 87, 453
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 7 cut(s) 30, 39, 124, 533, 594, 632, 699
FokI GGATG 2 cut(s) 260, 760
FriOI GRGCYC 1 cut(s) 732
Fsp4HI GCNGC 7 cut(s) 30, 39, 124, 533, 594, 632, 699
FspBI CTAG 2 cut(s) 198, 326
GlaI GCGC 1 cut(s) 348
GluI GCNGC 7 cut(s) 30, 39, 124, 533, 594, 632, 699
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 2 cut(s) 53, 565
HgaI GACGC 1 cut(s) 599
HhaI GCGC 1 cut(s) 349
Hin1II CATG 2 cut(s) 91, 457
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HinfI GANTC 3 cut(s) 280, 362, 464
HphI GGTGA 6 cut(s) 56, 138, 146, 188, 500, 701
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 3 cut(s) 82, 264, 661
Hpy188III TCNNGA 3 cut(s) 72, 308, 386
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 409, 437
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 9 cut(s) 13, 29, 47, 323, 335, 631, 641, 684, 698
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 38, 44, 120, 355, 488, 590, 704
HpyF3I CTNAG 8 cut(s) 186, 224, 276, 478, 522, 567, 660, 726
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 2 cut(s) 91, 457
HspAI GCGC 1 cut(s) 347
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 5 cut(s) 4, 418, 443, 493, 505
LmnI GCTCC 2 cut(s) 16, 581
Lsp1109I GCAGC 7 cut(s) 25, 41, 135, 544, 580, 643, 710
LweI GCATC 2 cut(s) 16, 238
MaeI CTAG 2 cut(s) 198, 326
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 200
MalI GATC 5 cut(s) 6, 420, 445, 495, 507
MboI GATC 5 cut(s) 4, 418, 443, 493, 505
MboII GAAGA 3 cut(s) 167, 683, 686
MfeI CAATTG 2 cut(s) 350, 546
MflI RGATCY 2 cut(s) 418, 443
MhlI GDGCHC 1 cut(s) 732
MluCI AATT 7 cut(s) 76, 142, 230, 265, 350, 546, 603
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 8 cut(s) 43, 219, 364, 393, 400, 493, 555, 613
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 2 cut(s) 207, 749
MslI CAYNNNNRTG 1 cut(s) 458
MspR9I CCNGG 1 cut(s) 765
MunI CAATTG 2 cut(s) 350, 546
Mva1269I GAATGC 1 cut(s) 623
MvaI CCWGG 1 cut(s) 765
MwoI GCNNNNNNNGC 8 cut(s) 35, 38, 44, 120, 355, 488, 590, 704
NdeII GATC 5 cut(s) 4, 418, 443, 493, 505
NlaIII CATG 2 cut(s) 91, 457
NlaIV GGNNCC 2 cut(s) 84, 420
NmuCI GTSAC 1 cut(s) 200
PceI AGGCCT 1 cut(s) 565
PcsI WCGNNNNNNNCGW 1 cut(s) 436
PctI GAATGC 1 cut(s) 623
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 3 cut(s) 280, 362, 464
PkrI GCNGC 7 cut(s) 31, 40, 125, 534, 595, 633, 700
Psp124BI GAGCTC 1 cut(s) 732
Psp6I CCWGG 1 cut(s) 763
PspGI CCWGG 1 cut(s) 763
PspN4I GGNNCC 2 cut(s) 84, 420
PspPI GGNCC 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 38
PsuI RGATCY 2 cut(s) 418, 443
RseI CAYNNNNRTG 1 cut(s) 458
SacI GAGCTC 1 cut(s) 732
SaqAI TTAA 2 cut(s) 207, 749
SatI GCNGC 7 cut(s) 30, 39, 124, 533, 594, 632, 699
Sau3AI GATC 5 cut(s) 4, 418, 443, 493, 505
Sau96I GGNCC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 765
SduI GDGCHC 1 cut(s) 732
SfaNI GCATC 2 cut(s) 16, 238
SmiMI CAYNNNNRTG 1 cut(s) 458
Sse9I AATT 7 cut(s) 76, 142, 230, 265, 350, 546, 603
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 1 cut(s) 712
SspMI CTAG 2 cut(s) 198, 326
SstI GAGCTC 1 cut(s) 732
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 1 cut(s) 763
StyI CCWWGG 1 cut(s) 742
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 496
TasI AATT 7 cut(s) 76, 142, 230, 265, 350, 546, 603
TfiI GAWTC 3 cut(s) 280, 362, 464
Tru1I TTAA 2 cut(s) 207, 749
Tru9I TTAA 2 cut(s) 207, 749
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 7 cut(s) 29, 38, 123, 532, 593, 631, 698
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 3 cut(s) 104, 405, 597
TspRI CASTG 1 cut(s) 372
XapI RAATTY 3 cut(s) 76, 142, 603
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 2 cut(s) 198, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.