Rh2BG203400

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0013593
Physical Location & Seq
Forward (+)
18812910 .. 18817015
4106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG203400.1

Sequence Viewer

Length: 1278 bp
ATGGCCGATGCAGAGCAAGTGGTGGCAAGTGATACATCACAGTGTTTGATAGATCAGCTTGGTATGGTATTACTGGAACTAAATGCTCATAATCATACTGCTGAGGACAGAGTTCAGTGGACAGAAATTGAAGAGCACTTCCGCAACCTTGAATTGACACTGAAGAAGAAATCTGAAGAGCTTGAAGTCAAGGAGAAGAAATTTGAGGAGCAGGAAGCTGAAACCTGTACTTTTCTTGTGGAGAGAGAAGCTACTGTTATTGCTAAAGAGCAAGCTCTGCTGGATCGGGTGCAGGAGCTAAAAGATGCAGCAGTCGCTGCTATTGCAGAGGCCCGAGACATTCACCAGTCAAGAAATTCGGAACCCATGAATGATGGGACTAACAAAGACAGCAAGGTAAGCAGCTCACTTGGTGATACAAATTCACCACAGGAAGATATTCCAACTAAAAAAGGTGATAATGCTAAGGGTATGGCTAGTGACGTTAAGCCACGCCCAGAACTGAGGCAATTTTGTGAGCAGATGGATGCCAAAGGGCTTCTGAATTATATTGCTGAGAATCATAAAAAACTAAATGTTGCTCGTCAGGAACTTACTATTGCACTAGAAAGTGCAAGTGAACCAGCGCTATTGGTGCTGGATTCACTGGAGGGGTTTTACCCTCTTGATGAAACTAACCAACCAGAGGGTAAGAAGGATCCTGTCCTTCGGGGTAAGCGTAGATCCTGTCTCATGCTTATGGAATCCTTGACCACCTTAGCCTCAAAGGCTGATCGAGTTGCTGATCGCCTTTTGAACCCTGAGACCAAGCAGCAAGCCAAAGCAATTGCTGATGAGTGGAGGCCTAAGTTGTTTAGTGGAGCTATTGACGCTGCCAATGGAATTTCATTGGAAGCAGAGGCATTCTTGCAGCTTCTTGCAACTTTTAGGATTGCTTCTGAGTTTGACGAAGAAGAACTCTGCAAGGTTGTTCTTGCAGCAGTTGCTCACCGCAGGCAGACACCTGAGCTCTGCCGTTCCCTTGGTTTAACACACAAAATGCCAGGTGTTGTTGAATCAATGATCAGAATTGGGAAACAAATTGATGCTGTGCATTTTATTCATGCCTTCCAGCTTACTGAAAATTTTCCTCCTGTGCCACTTTTGAAGACGTATTTGAAAGAACTGAGGAGAAATTCACAAGGCGACAGCAATGGAGACGCACAGGTAGAATTTAGTCGACCAAATGACCAGATGTTTTGTAATAATATTTTACTGATGATCTCTAATAAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

425

Amino Acids

47.6

Weight (kDa)

5.11

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 162 - 399 1.1e-79 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013593)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17030 FvH4_1g17030 FvH4_1g17030 FvH4_1g17030 FvH4_1g17030
malus_domestica MD02G1180500.v1.1
prunus_persica Prupe.6G225800_v2.0.a1
pyrus_communis pycom02g14640
rosa_chinensis RchiOBHm_Chr2g0107191
rosa_laevigata RLG00000017558
rosa_multiflora Rmu_co8250165.1_g000001
rosa_roxburghii Rroxscaffold_2G00136560
rosa_rugosa Rorug02G0140600
rosa_samantha Rh2AG191400 Rh2BG203400 Rh2CG196600 Rh2DG198700
rosa_wichuraiana Rw2G015130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1219
AciI CCGC 2 cut(s) 142, 991
AclWI GGATC 4 cut(s) 291, 692, 705, 717
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 7 cut(s) 200, 355, 421, 882, 1123, 1174, 1211
AcuI CTGAAG 2 cut(s) 182, 195
AdeI CACNNNGTG 1 cut(s) 413
AfaI GTAC 1 cut(s) 229
AfeI AGCGCT 1 cut(s) 627
AfiI CCNNNNNNNGG 1 cut(s) 685
AgsI TTSAA 7 cut(s) 131, 152, 185, 796, 1055, 1147, 1159
AjnI CCWGG 1 cut(s) 1042
Alw21I GWGCWC 2 cut(s) 138, 1011
Alw26I GTCTC 4 cut(s) 330, 734, 797, 1191
AlwI GGATC 4 cut(s) 291, 692, 705, 717
AlwNI CAGNNNCTG 1 cut(s) 317
Ama87I CYCGRG 1 cut(s) 333
Aor51HI AGCGCT 1 cut(s) 627
AoxI GGCC 3 cut(s) 3, 330, 842
ApeKI GCWGC 7 cut(s) 308, 317, 402, 811, 872, 910, 977
ApoI RAATTY 7 cut(s) 200, 355, 421, 882, 1123, 1174, 1211
Asp700I GAANNNNTTC 2 cut(s) 438, 1125
AspLEI GCGC 1 cut(s) 628
AspS9I GGNCC 1 cut(s) 331
AsuHPI GGTGA 5 cut(s) 335, 417, 425, 467, 980
AvaI CYCGRG 1 cut(s) 333
BamHI GGATCC 1 cut(s) 697
BanII GRGCYC 1 cut(s) 1011
BbsI GAAGAC 1 cut(s) 1154
Bbv12I GWGCWC 2 cut(s) 138, 1011
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 7 cut(s) 304, 320, 414, 823, 859, 922, 989
BccI CCATC 2 cut(s) 368, 517
BceAI ACGGC 1 cut(s) 999
BciT130I CCWGG 1 cut(s) 1044
BclI TGATCA 1 cut(s) 1062
BcoDI GTCTC 4 cut(s) 330, 734, 797, 1191
BfaI CTAG 2 cut(s) 477, 605
BfoI RGCGCY 1 cut(s) 629
BglI GCCNNNNNGGC 1 cut(s) 767
BisI GCNGC 7 cut(s) 309, 318, 403, 812, 873, 911, 978
BlsI GCNGC 7 cut(s) 310, 319, 404, 813, 874, 912, 979
Bme1390I CCNGG 1 cut(s) 1044
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 2 cut(s) 363, 699
BmrFI CCNGG 1 cut(s) 1044
BmsI GCATC 3 cut(s) 295, 517, 1075
BpiI GAAGAC 1 cut(s) 1154
BpmI CTGGAG 1 cut(s) 668
Bpu10I CCTNAGC 4 cut(s) 102, 465, 757, 1005
BsaI GGTCTC 1 cut(s) 797
BsaJI CCNNGG 1 cut(s) 1021
Bsc4I CCNNNNNNNGG 1 cut(s) 685
Bse1I ACTGG 3 cut(s) 78, 346, 651
Bse3DI GCAATG 1 cut(s) 1198
BseBI CCWGG 1 cut(s) 1044
BseDI CCNNGG 1 cut(s) 1021
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 1 cut(s) 685
BseMI GCAATG 1 cut(s) 1198
BseMII CTCAG 7 cut(s) 93, 494, 546, 792, 930, 996, 1157
BseNI ACTGG 3 cut(s) 78, 346, 651
BseRI GAGGAG 2 cut(s) 221, 1183
BseXI GCAGC 7 cut(s) 304, 320, 414, 823, 859, 922, 989
BsgI GTGCAG 1 cut(s) 311
BshFI GGCC 3 cut(s) 5, 332, 844
BsiHKAI GWGCWC 2 cut(s) 138, 1011
BsiHKCI CYCGRG 1 cut(s) 333
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 1 cut(s) 685
BsmAI GTCTC 4 cut(s) 330, 734, 797, 1191
BsmBI CGTCTC 1 cut(s) 1191
BsmFI GGGAC 1 cut(s) 391
BsmI GAATGC 1 cut(s) 902
BsnI GGCC 3 cut(s) 5, 332, 844
Bso31I GGTCTC 1 cut(s) 797
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 2 cut(s) 138, 1011
Bsp143I GATC 8 cut(s) 52, 283, 697, 722, 772, 784, 1062, 1260
BspACI CCGC 2 cut(s) 142, 991
BspANI GGCC 3 cut(s) 5, 332, 844
BspCNI CTCAG 7 cut(s) 94, 495, 547, 793, 931, 997, 1158
BspLI GGNNCC 2 cut(s) 363, 699
BspPI GGATC 4 cut(s) 291, 692, 705, 717
BspQI GCTCTTC 2 cut(s) 126, 171
BspTNI GGTCTC 1 cut(s) 797
BsrDI GCAATG 1 cut(s) 1198
BsrI ACTGG 3 cut(s) 78, 346, 651
BssECI CCNNGG 1 cut(s) 1021
BssMI GATC 8 cut(s) 52, 283, 697, 722, 772, 784, 1062, 1260
BssT1I CCWWGG 1 cut(s) 1021
Bst2UI CCWGG 1 cut(s) 1044
Bst4CI ACNGT 2 cut(s) 42, 256
Bst6I CTCTTC 2 cut(s) 126, 171
BstAPI GCANNNNNTGC 3 cut(s) 277, 317, 983
BstC8I GCNNGC 3 cut(s) 273, 816, 995
BstF5I GGATG 1 cut(s) 532
BstH2I RGCGCY 1 cut(s) 629
BstHHI GCGC 1 cut(s) 628
BstKTI GATC 8 cut(s) 55, 286, 700, 725, 775, 787, 1065, 1263
BstMAI GTCTC 4 cut(s) 330, 734, 797, 1191
BstMBI GATC 8 cut(s) 52, 283, 697, 722, 772, 784, 1062, 1260
BstMWI GCNNNNNNNGC 9 cut(s) 277, 314, 317, 323, 399, 634, 767, 869, 983
BstNI CCWGG 1 cut(s) 1044
BstSCI CCNGG 1 cut(s) 1042
BstV1I GCAGC 7 cut(s) 304, 320, 414, 823, 859, 922, 989
BstV2I GAAGAC 1 cut(s) 1154
BstX2I RGATCY 2 cut(s) 697, 722
BstYI RGATCY 2 cut(s) 697, 722
BsuRI GGCC 3 cut(s) 5, 332, 844
BtsCI GGATG 1 cut(s) 532
BtsIMutI CAGTG 4 cut(s) 47, 122, 158, 644
Cac8I GCNNGC 3 cut(s) 273, 816, 995
CaiI CAGNNNCTG 1 cut(s) 317
CfoI GCGC 1 cut(s) 628
Cfr13I GGNCC 1 cut(s) 331
CseI GACGC 2 cut(s) 878, 1208
Csp6I GTAC 1 cut(s) 228
CviAII CATG 3 cut(s) 367, 733, 1103
CviQI GTAC 1 cut(s) 228
DpnI GATC 8 cut(s) 54, 285, 699, 724, 774, 786, 1064, 1262
DpnII GATC 8 cut(s) 52, 283, 697, 722, 772, 784, 1062, 1260
DraIII CACNNNGTG 1 cut(s) 413
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 126, 171
EarI CTCTTC 2 cut(s) 126, 171
Ecl136II GAGCTC 1 cut(s) 1009
Eco130I CCWWGG 1 cut(s) 1021
Eco147I AGGCCT 1 cut(s) 844
Eco24I GRGCYC 1 cut(s) 1011
Eco31I GGTCTC 1 cut(s) 797
Eco47III AGCGCT 1 cut(s) 627
Eco53kI GAGCTC 1 cut(s) 1009
Eco57I CTGAAG 2 cut(s) 182, 195
Eco88I CYCGRG 1 cut(s) 333
EcoICRI GAGCTC 1 cut(s) 1009
EcoRII CCWGG 1 cut(s) 1042
EcoT14I CCWWGG 1 cut(s) 1021
EcoT38I GRGCYC 1 cut(s) 1011
ErhI CCWWGG 1 cut(s) 1021
Esp3I CGTCTC 1 cut(s) 1191
FaeI CATG 3 cut(s) 370, 736, 1106
FaqI GGGAC 1 cut(s) 391
FatI CATG 3 cut(s) 366, 732, 1102
FbaI TGATCA 1 cut(s) 1062
FblI GTMKAC 1 cut(s) 1219
Fnu4HI GCNGC 7 cut(s) 309, 318, 403, 812, 873, 911, 978
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 1 cut(s) 1011
Fsp4HI GCNGC 7 cut(s) 309, 318, 403, 812, 873, 911, 978
FspBI CTAG 2 cut(s) 477, 605
GlaI GCGC 1 cut(s) 627
GluI GCNGC 7 cut(s) 309, 318, 403, 812, 873, 911, 978
GsuI CTGGAG 1 cut(s) 668
HaeII RGCGCY 1 cut(s) 629
HaeIII GGCC 3 cut(s) 5, 332, 844
HgaI GACGC 2 cut(s) 878, 1208
HhaI GCGC 1 cut(s) 628
Hin1II CATG 3 cut(s) 370, 736, 1106
Hin6I GCGC 1 cut(s) 626
HinP1I GCGC 1 cut(s) 626
HincII GTYRAC 1 cut(s) 1220
HindII GTYRAC 1 cut(s) 1220
HinfI GANTC 4 cut(s) 559, 641, 743, 1055
HphI GGTGA 5 cut(s) 335, 417, 425, 467, 980
Hpy166II GTNNAC 3 cut(s) 120, 620, 1220
Hpy188I TCNGA 5 cut(s) 175, 361, 543, 940, 1067
Hpy188III TCNNGA 3 cut(s) 351, 587, 665
Hpy8I GTNNAC 3 cut(s) 120, 620, 1220
HpyAV CCTTC 3 cut(s) 688, 716, 1117
HpyCH4III ACNGT 2 cut(s) 42, 256
HpyCH4IV ACGT 2 cut(s) 483, 1151
HpyF10VI GCNNNNNNNGC 9 cut(s) 277, 314, 317, 323, 399, 634, 767, 869, 983
HpySE526I ACGT 2 cut(s) 483, 1151
Hsp92II CATG 3 cut(s) 370, 736, 1106
HspAI GCGC 1 cut(s) 626
Ksp22I TGATCA 1 cut(s) 1062
Kzo9I GATC 8 cut(s) 52, 283, 697, 722, 772, 784, 1062, 1260
LguI GCTCTTC 2 cut(s) 126, 171
LmnI GCTCC 3 cut(s) 208, 295, 860
Lsp1109I GCAGC 7 cut(s) 304, 320, 414, 823, 859, 922, 989
LweI GCATC 3 cut(s) 295, 517, 1075
MaeI CTAG 2 cut(s) 477, 605
MaeII ACGT 2 cut(s) 483, 1151
MaeIII GTNAC 1 cut(s) 479
MalI GATC 8 cut(s) 54, 285, 699, 724, 774, 786, 1064, 1262
MboI GATC 8 cut(s) 52, 283, 697, 722, 772, 784, 1062, 1260
MboII GAAGA 9 cut(s) 143, 175, 178, 188, 208, 446, 962, 965, 1159
MfeI CAATTG 1 cut(s) 825
MflI RGATCY 2 cut(s) 697, 722
MhlI GDGCHC 2 cut(s) 138, 1011
MmeI TCCRAC 1 cut(s) 467
MroXI GAANNNNTTC 2 cut(s) 438, 1125
MseI TTAA 2 cut(s) 486, 1028
MslI CAYNNNNRTG 2 cut(s) 40, 737
MspR9I CCNGG 1 cut(s) 1044
MunI CAATTG 1 cut(s) 825
Mva1269I GAATGC 1 cut(s) 902
MvaI CCWGG 1 cut(s) 1044
MwoI GCNNNNNNNGC 9 cut(s) 277, 314, 317, 323, 399, 634, 767, 869, 983
NdeII GATC 8 cut(s) 52, 283, 697, 722, 772, 784, 1062, 1260
NlaIII CATG 3 cut(s) 370, 736, 1106
NlaIV GGNNCC 2 cut(s) 363, 699
NmuCI GTSAC 1 cut(s) 479
PceI AGGCCT 1 cut(s) 844
PciSI GCTCTTC 2 cut(s) 126, 171
PcsI WCGNNNNNNNCGW 1 cut(s) 715
PctI GAATGC 1 cut(s) 902
PdmI GAANNNNTTC 2 cut(s) 438, 1125
PfeI GAWTC 4 cut(s) 559, 641, 743, 1055
PkrI GCNGC 7 cut(s) 310, 319, 404, 813, 874, 912, 979
Psp124BI GAGCTC 1 cut(s) 1011
Psp6I CCWGG 1 cut(s) 1042
PspGI CCWGG 1 cut(s) 1042
PspN4I GGNNCC 2 cut(s) 363, 699
PspPI GGNCC 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 317
PsuI RGATCY 2 cut(s) 697, 722
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 2 cut(s) 40, 737
SacI GAGCTC 1 cut(s) 1011
SalI GTCGAC 1 cut(s) 1218
SapI GCTCTTC 2 cut(s) 126, 171
SaqAI TTAA 2 cut(s) 486, 1028
SatI GCNGC 7 cut(s) 309, 318, 403, 812, 873, 911, 978
Sau3AI GATC 8 cut(s) 52, 283, 697, 722, 772, 784, 1062, 1260
Sau96I GGNCC 1 cut(s) 331
ScrFI CCNGG 1 cut(s) 1044
SduI GDGCHC 2 cut(s) 138, 1011
SfaNI GCATC 3 cut(s) 295, 517, 1075
SmiMI CAYNNNNRTG 2 cut(s) 40, 737
SseBI AGGCCT 1 cut(s) 844
SsiI CCGC 2 cut(s) 142, 991
SspI AATATT 1 cut(s) 1249
SspMI CTAG 2 cut(s) 477, 605
SstI GAGCTC 1 cut(s) 1011
StuI AGGCCT 1 cut(s) 844
StyD4I CCNGG 1 cut(s) 1042
StyI CCWWGG 1 cut(s) 1021
TaaI ACNGT 2 cut(s) 42, 256
TaiI ACGT 2 cut(s) 486, 1154
TaqI TCGA 2 cut(s) 775, 1219
TatI WGTACW 1 cut(s) 227
TfiI GAWTC 4 cut(s) 559, 641, 743, 1055
Tru1I TTAA 2 cut(s) 486, 1028
Tru9I TTAA 2 cut(s) 486, 1028
TscAI CASTG 4 cut(s) 47, 122, 165, 651
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 7 cut(s) 308, 317, 402, 811, 872, 910, 977
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 4 cut(s) 383, 684, 876, 1091
TspRI CASTG 4 cut(s) 47, 122, 165, 651
XapI RAATTY 7 cut(s) 200, 355, 421, 882, 1123, 1174, 1211
XmiI GTMKAC 1 cut(s) 1219
XmnI GAANNNNTTC 2 cut(s) 438, 1125
XspI CTAG 2 cut(s) 477, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.