breast cancer carboxy-terminal domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g03921 FvH4_7g03921 |
| malus_domestica | MD00G1152500.v1.1 |
| prunus_persica | Prupe.2G044000_v2.0.a1 Prupe.2G044000_v2.0.a1 Prupe.2G044000_v2.0.a1 Prupe.2G044000_v2.0.a1 Prupe.2G044000_v2.0.a1 Prupe.2G044000_v2.0.a1 |
| pyrus_communis | pycom02g23660 |
| rosa_chinensis | RchiOBHm_Chr1g0327541 |
| rosa_laevigata | RLG00000029987 |
| rosa_multiflora | Rmu_ssc0000042.1_g000039 |
| rosa_roxburghii | Rroxscaffold_4G00322590 |
| rosa_rugosa | Rorug01G0068200 |
| rosa_samantha | Rh1AG085300 Rh1BG067500 Rh1CG083000 |
| rosa_wichuraiana | Rw1G006660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 659, 2007 |
| Acc16I | TGCGCA | 1 cut(s) | 3133 |
| Acc65I | GGTACC | 2 cut(s) | 128, 591 |
| AccB1I | GGYRCC | 2 cut(s) | 128, 591 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3055 |
| AccI | GTMKAC | 1 cut(s) | 15 |
| AciI | CCGC | 5 cut(s) | 1252, 1730, 2926, 3228, 3267 |
| AclWI | GGATC | 6 cut(s) | 1053, 1145, 1601, 2700, 3179, 3250 |
| AcoI | YGGCCR | 2 cut(s) | 834, 1140 |
| AcuI | CTGAAG | 8 cut(s) | 62, 666, 954, 1140, 1584, 1626, 1693, 2160 |
| AfaI | GTAC | 7 cut(s) | 130, 227, 300, 593, 714, 1867, 2533 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 784, 932, 2227, 3039, 3055, 3218 |
| AflII | CTTAAG | 2 cut(s) | 122, 2546 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3114 |
| AhlI | ACTAGT | 1 cut(s) | 179 |
| AjiI | CACGTC | 1 cut(s) | 3116 |
| AjnI | CCWGG | 5 cut(s) | 67, 289, 512, 1353, 2226 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 83, 115, 731, 763, 1870, 1902, 3059, 3091 |
| AleI | CACNNNNGTG | 2 cut(s) | 425, 3012 |
| Alw21I | GWGCWC | 1 cut(s) | 978 |
| Alw26I | GTCTC | 6 cut(s) | 9, 867, 914, 1415, 2049, 2129 |
| AlwI | GGATC | 6 cut(s) | 1053, 1145, 1601, 2700, 3179, 3250 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 644, 1951 |
| AoxI | GGCC | 7 cut(s) | 460, 775, 834, 1140, 1351, 1787, 3224 |
| ApeKI | GCWGC | 8 cut(s) | 82, 447, 602, 638, 722, 2287, 2526, 3199 |
| AseI | ATTAAT | 1 cut(s) | 1806 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1101, 1319 |
| Asp718I | GGTACC | 2 cut(s) | 128, 591 |
| AspLEI | GCGC | 2 cut(s) | 1205, 3134 |
| AspS9I | GGNCC | 3 cut(s) | 776, 1787, 3225 |
| AsuHPI | GGTGA | 4 cut(s) | 1430, 1823, 2534, 2909 |
| AsuII | TTCGAA | 2 cut(s) | 1313, 1834 |
| AsuNHI | GCTAGC | 1 cut(s) | 142 |
| BalI | TGGCCA | 1 cut(s) | 1142 |
| BanI | GGYRCC | 2 cut(s) | 128, 591 |
| BanII | GRGCYC | 2 cut(s) | 978, 985 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2215, 2247, 2515, 2547 |
| BauI | CACGAG | 2 cut(s) | 212, 2132 |
| BbsI | GAAGAC | 1 cut(s) | 264 |
| Bbv12I | GWGCWC | 1 cut(s) | 978 |
| BbvCI | CCTCAGC | 2 cut(s) | 783, 3093 |
| BbvI | GCAGC | 8 cut(s) | 94, 434, 614, 650, 734, 2274, 2538, 3186 |
| BccI | CCATC | 8 cut(s) | 318, 767, 1077, 1169, 1798, 1892, 2484, 2727 |
| BceAI | ACGGC | 1 cut(s) | 2514 |
| BciT130I | CCWGG | 5 cut(s) | 69, 291, 514, 1355, 2228 |
| BciVI | GTATCC | 3 cut(s) | 514, 2044, 2234 |
| BcoDI | GTCTC | 6 cut(s) | 9, 867, 914, 1415, 2049, 2129 |
| BcuI | ACTAGT | 1 cut(s) | 179 |
| BfmI | CTRYAG | 3 cut(s) | 267, 2750, 2980 |
| BfoI | RGCGCY | 1 cut(s) | 1206 |
| BfrI | CTTAAG | 2 cut(s) | 122, 2546 |
| BfuI | GTATCC | 3 cut(s) | 514, 2044, 2234 |
| BglII | AGATCT | 2 cut(s) | 1985, 3246 |
| BisI | GCNGC | 8 cut(s) | 83, 448, 603, 639, 723, 2288, 2527, 3200 |
| BlsI | GCNGC | 8 cut(s) | 84, 449, 604, 640, 724, 2289, 2528, 3201 |
| Bme1390I | CCNGG | 5 cut(s) | 69, 291, 514, 1355, 2228 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3114 |
| BmgBI | CACGTC | 1 cut(s) | 3116 |
| BmgT120I | GGNCC | 3 cut(s) | 776, 1787, 3225 |
| BmiI | GGNNCC | 5 cut(s) | 130, 593, 1328, 2910, 3082 |
| BmrFI | CCNGG | 5 cut(s) | 69, 291, 514, 1355, 2228 |
| BmrI | ACTGGG | 1 cut(s) | 3254 |
| BmtI | GCTAGC | 1 cut(s) | 146 |
| BmuI | ACTGGG | 1 cut(s) | 3254 |
| BpiI | GAAGAC | 1 cut(s) | 264 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2176, 2208 |
| BpmI | CTGGAG | 4 cut(s) | 1356, 1440, 1806, 3020 |
| Bpu10I | CCTNAGC | 3 cut(s) | 783, 977, 3093 |
| Bpu14I | TTCGAA | 2 cut(s) | 1313, 1834 |
| BpuEI | CTTGAG | 2 cut(s) | 1554, 3142 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2091 |
| BsaI | GGTCTC | 1 cut(s) | 914 |
| BsaJI | CCNNGG | 4 cut(s) | 48, 150, 512, 513 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3072, 3102 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 784, 932, 2227, 3039, 3055, 3218 |
| Bse118I | RCCGGY | 1 cut(s) | 1329 |
| Bse1I | ACTGG | 6 cut(s) | 720, 1823, 2053, 3037, 3161, 3260 |
| Bse3DI | GCAATG | 1 cut(s) | 633 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2091 |
| BseBI | CCWGG | 5 cut(s) | 69, 291, 514, 1355, 2228 |
| BseDI | CCNNGG | 4 cut(s) | 48, 150, 512, 513 |
| BseJI | GATNNNNATC | 1 cut(s) | 2091 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 784, 932, 2227, 3039, 3055, 3218 |
| BseMI | GCAATG | 1 cut(s) | 633 |
| BseNI | ACTGG | 6 cut(s) | 720, 1823, 2053, 3037, 3161, 3260 |
| BseRI | GAGGAG | 1 cut(s) | 2197 |
| BseXI | GCAGC | 8 cut(s) | 94, 434, 614, 650, 734, 2274, 2538, 3186 |
| BseYI | CCCAGC | 1 cut(s) | 778 |
| BsgI | GTGCAG | 2 cut(s) | 1651, 2799 |
| BshFI | GGCC | 7 cut(s) | 462, 777, 836, 1142, 1353, 1789, 3226 |
| BshNI | GGYRCC | 2 cut(s) | 128, 591 |
| BsiHKAI | GWGCWC | 1 cut(s) | 978 |
| BsiSI | CCGG | 2 cut(s) | 1330, 2291 |
| BslFI | GGGAC | 3 cut(s) | 1594, 1610, 1958 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 784, 932, 2227, 3039, 3055, 3218 |
| BsmAI | GTCTC | 6 cut(s) | 9, 867, 914, 1415, 2049, 2129 |
| BsmBI | CGTCTC | 1 cut(s) | 1415 |
| BsmFI | GGGAC | 3 cut(s) | 1594, 1610, 1958 |
| BsmI | GAATGC | 2 cut(s) | 113, 1709 |
| BsnI | GGCC | 7 cut(s) | 462, 777, 836, 1142, 1353, 1789, 3226 |
| Bso31I | GGTCTC | 1 cut(s) | 914 |
| Bsp119I | TTCGAA | 2 cut(s) | 1313, 1834 |
| Bsp1286I | GDGCHC | 2 cut(s) | 978, 985 |
| BspACI | CCGC | 5 cut(s) | 1252, 1730, 2926, 3228, 3267 |
| BspANI | GGCC | 7 cut(s) | 462, 777, 836, 1142, 1353, 1789, 3226 |
| BspHI | TCATGA | 3 cut(s) | 1105, 1185, 2515 |
| BspLI | GGNNCC | 5 cut(s) | 130, 593, 1328, 2910, 3082 |
| BspMAI | CTGCAG | 1 cut(s) | 271 |
| BspOI | GCTAGC | 1 cut(s) | 146 |
| BspPI | GGATC | 6 cut(s) | 1053, 1145, 1601, 2700, 3179, 3250 |
| BspQI | GCTCTTC | 1 cut(s) | 437 |
| BspT104I | TTCGAA | 2 cut(s) | 1313, 1834 |
| BspT107I | GGYRCC | 2 cut(s) | 128, 591 |
| BspTI | CTTAAG | 2 cut(s) | 122, 2546 |
| BspTNI | GGTCTC | 1 cut(s) | 914 |
| BsrDI | GCAATG | 1 cut(s) | 633 |
| BsrFI | RCCGGY | 1 cut(s) | 1329 |
| BsrI | ACTGG | 6 cut(s) | 720, 1823, 2053, 3037, 3161, 3260 |
| BssAI | RCCGGY | 1 cut(s) | 1329 |
| BssECI | CCNNGG | 4 cut(s) | 48, 150, 512, 513 |
| BssSI | CACGAG | 2 cut(s) | 212, 2132 |
| BssT1I | CCWWGG | 1 cut(s) | 150 |
| Bst2BI | CACGAG | 2 cut(s) | 212, 2132 |
| Bst2UI | CCWGG | 5 cut(s) | 69, 291, 514, 1355, 2228 |
| Bst6I | CTCTTC | 4 cut(s) | 437, 2047, 2114, 2552 |
| BstAFI | CTTAAG | 2 cut(s) | 122, 2546 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1451, 2411 |
| BstBI | TTCGAA | 2 cut(s) | 1313, 1834 |
| BstC8I | GCNNGC | 5 cut(s) | 144, 683, 2347, 2833, 3228 |
| BstH2I | RGCGCY | 1 cut(s) | 1206 |
| BstHHI | GCGC | 2 cut(s) | 1205, 3134 |
| BstMAI | GTCTC | 6 cut(s) | 9, 867, 914, 1415, 2049, 2129 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 82, 647, 1451, 1795, 2411, 3089 |
| BstNI | CCWGG | 5 cut(s) | 69, 291, 514, 1355, 2228 |
| BstNSI | RCATGY | 2 cut(s) | 894, 2349 |
| BstSCI | CCNGG | 5 cut(s) | 67, 289, 512, 1353, 2226 |
| BstSFI | CTRYAG | 3 cut(s) | 267, 2750, 2980 |
| BstV1I | GCAGC | 8 cut(s) | 94, 434, 614, 650, 734, 2274, 2538, 3186 |
| BstV2I | GAAGAC | 1 cut(s) | 264 |
| BstX2I | RGATCY | 5 cut(s) | 1045, 1606, 1985, 3246, 3255 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1263, 3168 |
| BstYI | RGATCY | 5 cut(s) | 1045, 1606, 1985, 3246, 3255 |
| BsuI | GTATCC | 3 cut(s) | 514, 2044, 2234 |
| BsuRI | GGCC | 7 cut(s) | 462, 777, 836, 1142, 1353, 1789, 3226 |
| BtrI | CACGTC | 1 cut(s) | 3116 |
| BtsI | GCAGTG | 4 cut(s) | 714, 2787, 3134, 3159 |
| BtsIMutI | CAGTG | 9 cut(s) | 432, 714, 1141, 2077, 2105, 2787, 3044, 3134, 3159 |
| Cac8I | GCNNGC | 5 cut(s) | 144, 683, 2347, 2833, 3228 |
| CaiI | CAGNNNCTG | 2 cut(s) | 644, 1951 |
| CciI | TCATGA | 3 cut(s) | 1105, 1185, 2515 |
| CfoI | GCGC | 2 cut(s) | 1205, 3134 |
| Cfr10I | RCCGGY | 1 cut(s) | 1329 |
| Cfr13I | GGNCC | 3 cut(s) | 776, 1787, 3225 |
| CseI | GACGC | 1 cut(s) | 135 |
| Csp6I | GTAC | 7 cut(s) | 129, 226, 299, 592, 713, 1866, 2532 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 690, 725 |
| CviQI | GTAC | 7 cut(s) | 129, 226, 299, 592, 713, 1866, 2532 |
| DraI | TTTAAA | 1 cut(s) | 3028 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3114 |
| EaeI | YGGCCR | 2 cut(s) | 834, 1140 |
| Eam1104I | CTCTTC | 4 cut(s) | 437, 2047, 2114, 2552 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3114 |
| EarI | CTCTTC | 4 cut(s) | 437, 2047, 2114, 2552 |
| EciI | GGCGGA | 1 cut(s) | 1241 |
| Ecl136II | GAGCTC | 1 cut(s) | 976 |
| Eco130I | CCWWGG | 1 cut(s) | 150 |
| Eco24I | GRGCYC | 2 cut(s) | 978, 985 |
| Eco31I | GGTCTC | 1 cut(s) | 914 |
| Eco32I | GATATC | 1 cut(s) | 1006 |
| Eco53kI | GAGCTC | 1 cut(s) | 976 |
| Eco57I | CTGAAG | 8 cut(s) | 62, 666, 954, 1140, 1584, 1626, 1693, 2160 |
| EcoICRI | GAGCTC | 1 cut(s) | 976 |
| EcoRI | GAATTC | 4 cut(s) | 936, 1267, 1738, 2582 |
| EcoRII | CCWGG | 5 cut(s) | 67, 289, 512, 1353, 2226 |
| EcoRV | GATATC | 1 cut(s) | 1006 |
| EcoT14I | CCWWGG | 1 cut(s) | 150 |
| EcoT22I | ATGCAT | 1 cut(s) | 1363 |
| EcoT38I | GRGCYC | 2 cut(s) | 978, 985 |
| ErhI | CCWWGG | 1 cut(s) | 150 |
| Esp3I | CGTCTC | 1 cut(s) | 1415 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 711, 743, 2001, 2033 |
| FaqI | GGGAC | 3 cut(s) | 1594, 1610, 1958 |
| FauI | CCCGC | 1 cut(s) | 3235 |
| FblI | GTMKAC | 1 cut(s) | 15 |
| Fnu4HI | GCNGC | 8 cut(s) | 83, 448, 603, 639, 723, 2288, 2527, 3200 |
| FriOI | GRGCYC | 2 cut(s) | 978, 985 |
| Fsp4HI | GCNGC | 8 cut(s) | 83, 448, 603, 639, 723, 2288, 2527, 3200 |
| FspAI | RTGCGCAY | 1 cut(s) | 3133 |
| FspI | TGCGCA | 1 cut(s) | 3133 |
| GlaI | GCGC | 2 cut(s) | 1204, 3133 |
| GluI | GCNGC | 8 cut(s) | 83, 448, 603, 639, 723, 2288, 2527, 3200 |
| GsaI | CCCAGC | 1 cut(s) | 782 |
| GsuI | CTGGAG | 4 cut(s) | 1356, 1440, 1806, 3020 |
| HaeII | RGCGCY | 1 cut(s) | 1206 |
| HaeIII | GGCC | 7 cut(s) | 462, 777, 836, 1142, 1353, 1789, 3226 |
| HapII | CCGG | 2 cut(s) | 1330, 2291 |
| HgaI | GACGC | 1 cut(s) | 135 |
| HhaI | GCGC | 2 cut(s) | 1205, 3134 |
| Hin6I | GCGC | 2 cut(s) | 1203, 3132 |
| HinP1I | GCGC | 2 cut(s) | 1203, 3132 |
| HincII | GTYRAC | 2 cut(s) | 16, 1084 |
| HindII | GTYRAC | 2 cut(s) | 16, 1084 |
| HindIII | AAGCTT | 6 cut(s) | 578, 1112, 1260, 1906, 2306, 2698 |
| HpaII | CCGG | 2 cut(s) | 1330, 2291 |
| HphI | GGTGA | 4 cut(s) | 1430, 1823, 2534, 2909 |
| Hpy166II | GTNNAC | 7 cut(s) | 16, 1084, 1246, 1465, 1535, 2785, 3049 |
| Hpy8I | GTNNAC | 7 cut(s) | 16, 1084, 1246, 1465, 1535, 2785, 3049 |
| HpyCH4IV | ACGT | 5 cut(s) | 693, 1461, 2215, 2622, 3115 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 82, 647, 1451, 1795, 2411, 3089 |
| HpySE526I | ACGT | 5 cut(s) | 693, 1461, 2215, 2622, 3115 |
| HspAI | GCGC | 2 cut(s) | 1203, 3132 |
| KpnI | GGTACC | 2 cut(s) | 132, 595 |
| LguI | GCTCTTC | 1 cut(s) | 437 |
| LmnI | GCTCC | 5 cut(s) | 455, 1326, 1459, 2908, 3080 |
| Lsp1109I | GCAGC | 8 cut(s) | 94, 434, 614, 650, 734, 2274, 2538, 3186 |
| MaeII | ACGT | 5 cut(s) | 693, 1461, 2215, 2622, 3115 |
| MaeIII | GTNAC | 6 cut(s) | 1301, 1825, 2211, 2540, 3070, 3116 |
| MfeI | CAATTG | 1 cut(s) | 98 |
| MflI | RGATCY | 5 cut(s) | 1045, 1606, 1985, 3246, 3255 |
| MhlI | GDGCHC | 2 cut(s) | 978, 985 |
| MlsI | TGGCCA | 1 cut(s) | 1142 |
| MluNI | TGGCCA | 1 cut(s) | 1142 |
| MlyI | GAGTC | 1 cut(s) | 2021 |
| MmeI | TCCRAC | 1 cut(s) | 1325 |
| Mox20I | TGGCCA | 1 cut(s) | 1142 |
| Mph1103I | ATGCAT | 1 cut(s) | 1363 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1101, 1319 |
| MscI | TGGCCA | 1 cut(s) | 1142 |
| MslI | CAYNNNNRTG | 4 cut(s) | 425, 570, 2397, 3012 |
| Msp20I | TGGCCA | 1 cut(s) | 1142 |
| MspA1I | CMGCKG | 2 cut(s) | 605, 782 |
| MspCI | CTTAAG | 2 cut(s) | 122, 2546 |
| MspI | CCGG | 2 cut(s) | 1330, 2291 |
| MspR9I | CCNGG | 5 cut(s) | 69, 291, 514, 1355, 2228 |
| MunI | CAATTG | 1 cut(s) | 98 |
| Mva1269I | GAATGC | 2 cut(s) | 113, 1709 |
| MvaI | CCWGG | 5 cut(s) | 69, 291, 514, 1355, 2228 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 82, 647, 1451, 1795, 2411, 3089 |
| NheI | GCTAGC | 1 cut(s) | 142 |
| NlaIV | GGNNCC | 5 cut(s) | 130, 593, 1328, 2910, 3082 |
| NmuCI | GTSAC | 4 cut(s) | 1825, 2211, 2540, 3116 |
| NsbI | TGCGCA | 1 cut(s) | 3133 |
| NsiI | ATGCAT | 1 cut(s) | 1363 |
| NspI | RCATGY | 2 cut(s) | 894, 2349 |
| NspV | TTCGAA | 2 cut(s) | 1313, 1834 |
| OliI | CACNNNNGTG | 2 cut(s) | 425, 3012 |
| PaeI | GCATGC | 1 cut(s) | 2349 |
| PagI | TCATGA | 3 cut(s) | 1105, 1185, 2515 |
| PasI | CCCWGGG | 1 cut(s) | 513 |
| PciSI | GCTCTTC | 1 cut(s) | 437 |
| PctI | GAATGC | 2 cut(s) | 113, 1709 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1101, 1319 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3055 |
| PfoI | TCCNGGA | 1 cut(s) | 289 |
| PkrI | GCNGC | 8 cut(s) | 84, 449, 604, 640, 724, 2289, 2528, 3201 |
| PleI | GAGTC | 1 cut(s) | 2020 |
| PpsI | GAGTC | 1 cut(s) | 2020 |
| PshBI | ATTAAT | 1 cut(s) | 1806 |
| PsiI | TTATAA | 2 cut(s) | 659, 2007 |
| Psp124BI | GAGCTC | 1 cut(s) | 978 |
| Psp6I | CCWGG | 5 cut(s) | 67, 289, 512, 1353, 2226 |
| PspFI | CCCAGC | 1 cut(s) | 778 |
| PspGI | CCWGG | 5 cut(s) | 67, 289, 512, 1353, 2226 |
| PspN4I | GGNNCC | 5 cut(s) | 130, 593, 1328, 2910, 3082 |
| PspPI | GGNCC | 3 cut(s) | 776, 1787, 3225 |
| PstI | CTGCAG | 1 cut(s) | 271 |
| PstNI | CAGNNNCTG | 2 cut(s) | 644, 1951 |
| PsuI | RGATCY | 5 cut(s) | 1045, 1606, 1985, 3246, 3255 |
| PvuII | CAGCTG | 2 cut(s) | 605, 782 |
| RsaI | GTAC | 7 cut(s) | 130, 227, 300, 593, 714, 1867, 2533 |
| RsaNI | GTAC | 7 cut(s) | 129, 226, 299, 592, 713, 1866, 2532 |
| RseI | CAYNNNNRTG | 4 cut(s) | 425, 570, 2397, 3012 |
| SacI | GAGCTC | 1 cut(s) | 978 |
| SalI | GTCGAC | 1 cut(s) | 14 |
| SapI | GCTCTTC | 1 cut(s) | 437 |
| SatI | GCNGC | 8 cut(s) | 83, 448, 603, 639, 723, 2288, 2527, 3200 |
| Sau96I | GGNCC | 3 cut(s) | 776, 1787, 3225 |
| SchI | GAGTC | 1 cut(s) | 2021 |
| ScrFI | CCNGG | 5 cut(s) | 69, 291, 514, 1355, 2228 |
| SduI | GDGCHC | 2 cut(s) | 978, 985 |
| SfcI | CTRYAG | 3 cut(s) | 267, 2750, 2980 |
| SfuI | TTCGAA | 2 cut(s) | 1313, 1834 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 425, 570, 2397, 3012 |
| SmlI | CTYRAG | 4 cut(s) | 122, 1569, 2546, 3121 |
| SmoI | CTYRAG | 4 cut(s) | 122, 1569, 2546, 3121 |
| SpeI | ACTAGT | 1 cut(s) | 179 |
| SphI | GCATGC | 1 cut(s) | 2349 |
| SsiI | CCGC | 5 cut(s) | 1252, 1730, 2926, 3228, 3267 |
| SspI | AATATT | 2 cut(s) | 2462, 2796 |
| SstI | GAGCTC | 1 cut(s) | 978 |
| StyD4I | CCNGG | 5 cut(s) | 67, 289, 512, 1353, 2226 |
| StyI | CCWWGG | 1 cut(s) | 150 |
| TaiI | ACGT | 5 cut(s) | 696, 1464, 2218, 2625, 3118 |
| TaqI | TCGA | 6 cut(s) | 15, 1313, 1834, 1896, 1941, 2878 |
| TaqII | GACCGA | 1 cut(s) | 1911 |
| TatI | WGTACW | 1 cut(s) | 298 |
| TscAI | CASTG | 9 cut(s) | 432, 714, 1141, 2077, 2112, 2787, 3044, 3134, 3159 |
| TseFI | GTSAC | 4 cut(s) | 1825, 2211, 2540, 3116 |
| TseI | GCWGC | 8 cut(s) | 82, 447, 602, 638, 722, 2287, 2526, 3199 |
| Tsp45I | GTSAC | 4 cut(s) | 1825, 2211, 2540, 3116 |
| TspGWI | ACGGA | 7 cut(s) | 394, 1069, 1609, 2210, 2979, 3024, 3195 |
| TspRI | CASTG | 9 cut(s) | 432, 714, 1141, 2077, 2112, 2787, 3044, 3134, 3159 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3055 |
| Vha464I | CTTAAG | 2 cut(s) | 122, 2546 |
| VspI | ATTAAT | 1 cut(s) | 1806 |
| XceI | RCATGY | 2 cut(s) | 894, 2349 |
| XmiI | GTMKAC | 1 cut(s) | 15 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1101, 1319 |
| Zsp2I | ATGCAT | 1 cut(s) | 1363 |