Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000042.1

Orthogroup ID

OG0012645

Physical Location & Seq

Genomic Coordinates Forward (+)

210326 .. 211071

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000042.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgactcttgacacatgttactgtaaagtcttccaatttgttgagattttgtcactaactgatgcagaaagcatggcttctgttagcctcttattggatgataatcactggcatggaggtgggcaggtctttaaaaccctccagaggttaatcctcgatttggagaaagcgaagatttcttggggagcaattgtttctgaggatgaaaagacatcacgccacttgaggcactgtgccgccgaacaaaagctaccaataatgccagctagctggatcataaaaagcttgcatttaggaaagcgtcttccattttcagatacaggcccttcctcatctccagtgcttacaatttctgggcccagtttccataggatgagagaagatgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 RTT107_BRCT_5

Protein Analysis

129

Amino Acids

14.45

Weight (kDa)

6.58

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012645)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g03921 FvH4_7g03921
malus_domestica	MD00G1152500.v1.1
prunus_persica	Prupe.2G044000_v2.0.a1 Prupe.2G044000_v2.0.a1 Prupe.2G044000_v2.0.a1 Prupe.2G044000_v2.0.a1 Prupe.2G044000_v2.0.a1 Prupe.2G044000_v2.0.a1
pyrus_communis	pycom02g23660
rosa_chinensis	RchiOBHm_Chr1g0327541
rosa_laevigata	RLG00000029987
rosa_multiflora	Rmu_ssc0000042.1_g000039
rosa_roxburghii	Rroxscaffold_4G00322590
rosa_rugosa	Rorug01G0068200
rosa_samantha	Rh1AG085300 Rh1BG067500 Rh1CG083000
rosa_wichuraiana	Rw1G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	115
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	1 cut(s)	281
AfiI	CCNNNNNNNGG	3 cut(s)	94, 144, 160
AflIII	ACRYGT	1 cut(s)	14
AluBI	AGCT	4 cut(s)	250, 266, 270, 285
AluI	AGCT	4 cut(s)	250, 266, 270, 285
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	2 cut(s)	322, 356
ApaI	GGGCCC	1 cut(s)	360
AspS9I	GGNCC	3 cut(s)	323, 356, 357
AsuNHI	GCTAGC	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	360
BanII	GRGCYC	1 cut(s)	360
BbsI	GAAGAC	2 cut(s)	22, 296
BfaI	CTAG	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	115
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmgT120I	GGNCC	3 cut(s)	323, 356, 357
BmiI	GGNNCC	1 cut(s)	358
BmrI	ACTGGG	1 cut(s)	354
BmsI	GCATC	1 cut(s)	52
BmtI	GCTAGC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	354
BpiI	GAAGAC	2 cut(s)	22, 296
BpmI	CTGGAG	2 cut(s)	125, 321
BpuEI	CTTGAG	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 144, 160
Bse1I	ACTGG	3 cut(s)	113, 338, 360
Bse8I	GATNNNNATC	1 cut(s)	102
BseGI	GGATG	3 cut(s)	103, 208, 378
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	3 cut(s)	94, 144, 160
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	3 cut(s)	113, 338, 360
BseSI	GKGCMC	1 cut(s)	360
BshFI	GGCC	2 cut(s)	324, 358
BslI	CCNNNNNNNGG	3 cut(s)	94, 144, 160
BsnI	GGCC	2 cut(s)	324, 358
Bsp120I	GGGCCC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	273
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	324, 358
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	115
BspOI	GCTAGC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	281
BsrI	ACTGG	3 cut(s)	113, 338, 360
BssMI	GATC	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	23, 233
BstC8I	GCNNGC	3 cut(s)	264, 268, 287
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	3 cut(s)	103, 208, 378
BstKTI	GATC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	360
BstV2I	GAAGAC	2 cut(s)	22, 296
BstXI	CCANNNNNNTGG	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	324, 358
BtsCI	GGATG	3 cut(s)	103, 208, 378
BtsIMutI	CAGTG	3 cut(s)	106, 229, 345
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	3 cut(s)	264, 268, 287
Cfr13I	GGNCC	3 cut(s)	323, 356, 357
CseI	GACGC	1 cut(s)	290
CviAII	CATG	3 cut(s)	15, 73, 113
CviJI	RGCY	8 cut(s)	77, 87, 250, 266, 270, 285, 324, 358
CviKI_1	RGCY	8 cut(s)	77, 87, 250, 266, 270, 285, 324, 358
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
DraI	TTTAAA	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	360
FaeI	CATG	3 cut(s)	18, 76, 116
FaiI	YATR	6 cut(s)	16, 74, 114, 278, 369, 388
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FatI	CATG	3 cut(s)	14, 72, 112
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	3 cut(s)	110, 215, 385
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	267
GluI	GCNGC	1 cut(s)	237
GsuI	CTGGAG	2 cut(s)	125, 321
HaeIII	GGCC	2 cut(s)	324, 358
HgaI	GACGC	1 cut(s)	290
Hin1II	CATG	3 cut(s)	18, 76, 116
HindIII	AAGCTT	1 cut(s)	283
HinfI	GANTC	1 cut(s)	4
Hpy188I	TCNGA	2 cut(s)	199, 316
Hpy188III	TCNNGA	2 cut(s)	8, 142
HpyAV	CCTTC	1 cut(s)	336
HpyCH4III	ACNGT	2 cut(s)	23, 233
HpyCH4V	TGCA	2 cut(s)	65, 289
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	18, 76, 116
Kzo9I	GATC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	9 cut(s)	94, 110, 155, 256, 276, 306, 339, 351, 373
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	17, 51
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	3 cut(s)	22, 184, 296
MfeI	CAATTG	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	3 cut(s)	35, 189, 348
MnlI	CCTC	8 cut(s)	98, 110, 138, 149, 164, 193, 219, 340
MseI	TTAA	2 cut(s)	132, 149
MslI	CAYNNNNRTG	2 cut(s)	111, 117
MunI	CAATTG	1 cut(s)	189
NdeII	GATC	1 cut(s)	273
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	3 cut(s)	18, 76, 116
NlaIV	GGNNCC	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	51
NspI	RCATGY	1 cut(s)	18
PciI	ACATGT	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	238
PscI	ACATGT	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	358
PspOMI	GGGCCC	1 cut(s)	356
PspPI	GGNCC	3 cut(s)	323, 356, 357
PsrI	GAACNNNNNNTAC	2 cut(s)	234, 266
RseI	CAYNNNNRTG	2 cut(s)	111, 117
SaqAI	TTAA	2 cut(s)	132, 149
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	3 cut(s)	323, 356, 357
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	7 cut(s)	121, 129, 149, 252, 268, 272, 287
SfaNI	GCATC	1 cut(s)	52
SmiMI	CAYNNNNRTG	2 cut(s)	111, 117
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	3 cut(s)	35, 189, 348
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	23, 233
TaqI	TCGA	1 cut(s)	156
TasI	AATT	3 cut(s)	35, 189, 348
TauI	GCSGC	1 cut(s)	239
Tru1I	TTAA	2 cut(s)	132, 149
Tru9I	TTAA	2 cut(s)	132, 149
TscAI	CASTG	3 cut(s)	113, 236, 345
TseFI	GTSAC	1 cut(s)	51
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	3 cut(s)	113, 236, 345
XceI	RCATGY	1 cut(s)	18
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.