Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005951

Physical Location & Seq

Genomic Coordinates Reverse (-)

1312057 .. 1312803

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g01800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCTCTGTGTCGATGGCCACTTTTGGTTAATAGAAGCGTCCGAGTTTGGAGGAAAGAATTCTTCCCACTATTTTTCTTTACCTATTTTAATTCATATCCTCTTTATTATATTGGTTCTTTATCCGGAACTAATTCTTCCCACTATTTTTCTCTACCTATTCTTGATTGGAATTTGGAACTTCCGGTGGAGGCCAAGGCACCCTCCTCACGTGGACATCCTGCTATCTCATGCTGACGCTGCTCATCCTGACGAACTAGATGAAGAGTTTGACAAGTTCCCAACTTCTCGGCCATCAGATATAGTGAGCATGAGATATGATCGACTAAGAAGCATAGCAGGGAGGGTTCAGACTGTTGTCGGTGATCTGGCAACTCAAGGTGAAAGGTTTCAGTCTCCTCTGAGTTGGAGAGACCCTAGAGCCACCACCCTGTTCGTAACTTTCTGTTTGATTGCCGCCATTGTTCTCTACGTAACTCCATTCCAAGTTGTGGCCCTTCTAGCAGGCATTTACATGTTAAGGCATCCCAAATTCCGCCACAAACTTCCTTCAGTGCCACTCAACTTCTTTAGGAGGCTGCCTGCAAGATCAGACAGCATGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0031224 GO:0031974 GO:0031981 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

202

Amino Acids

23.26

Weight (kDa)

8.64

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex24p	PF06398	27 - 181	2.4e-06	Integral peroxisomal membrane peroxin
PRT_C	PF08372	46 - 201	2.6e-79	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12970
fragaria_vesca	FvH4_3g43560 FvH4_3g43560
malus_domestica	MD03G1021000.v1.1 MD11G1022700.v1.1
prunus_persica	Prupe.6G018400_v2.0.a1 Prupe.6G018400_v2.0.a1 Prupe.6G018400_v2.0.a1
pyrus_communis	pycom03g01800 pycom03g01810 pycom11g01840 pycom11g01850
rosa_chinensis	RchiOBHm_Chr5g0078121
rosa_laevigata	RLG00000036753
rosa_multiflora	Rmu_co8493933.1_g000001 Rmu_sc0000670.1_g000002 Rmu_sc0019972.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000440 Rroxscaffold_1G00004010
rosa_rugosa	Rorug05G0458700 Rorug05G0458700 Rorug05G0458800
rosa_samantha	Rh5AG513300 Rh5BG536400 Rh5CG559800 Rh5DG547900
rosa_wichuraiana	Rw5G047610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	198
AccB7I	CCANNNNNTGG	1 cut(s)	490
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	2 cut(s)	456, 535
AcoI	YGGCCR	2 cut(s)	16, 290
AcsI	RAATTY	3 cut(s)	58, 171, 530
AcuI	CTGAAG	1 cut(s)	534
AcvI	CACGTG	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	490
AflIII	ACRYGT	1 cut(s)	513
Alw26I	GTCTC	2 cut(s)	399, 405
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	4 cut(s)	16, 191, 290, 492
ApeKI	GCWGC	2 cut(s)	239, 577
ApoI	RAATTY	3 cut(s)	58, 171, 530
Asp700I	GAANNNNTTC	3 cut(s)	58, 132, 387
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	2 cut(s)	374, 392
BalI	TGGCCA	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	198
BbrPI	CACGTG	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	226, 564
BccI	CCATC	2 cut(s)	8, 301
BcoDI	GTCTC	2 cut(s)	399, 405
BfaI	CTAG	3 cut(s)	257, 417, 500
BisI	GCNGC	3 cut(s)	240, 456, 578
BlsI	GCNGC	3 cut(s)	241, 457, 579
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	200
BmsI	GCATC	1 cut(s)	532
BoxI	GACNNNNGTC	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	360
BsaAI	YACGTR	2 cut(s)	211, 472
BsaI	GGTCTC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	194
BsaWI	WCCGGW	2 cut(s)	124, 183
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
BseAI	TCCGGA	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	3 cut(s)	216, 244, 523
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	392
BseRI	GAGGAG	2 cut(s)	195, 387
BseXI	GCAGC	2 cut(s)	226, 564
BshFI	GGCC	4 cut(s)	18, 193, 292, 494
BshNI	GGYRCC	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	125, 184
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	2 cut(s)	399, 405
BsnI	GGCC	4 cut(s)	18, 193, 292, 494
Bso31I	GGTCTC	1 cut(s)	405
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	319, 364, 587
BspACI	CCGC	2 cut(s)	456, 535
BspANI	GGCC	4 cut(s)	18, 193, 292, 494
BspCNI	CTCAG	1 cut(s)	393
BspEI	TCCGGA	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	198
BspTNI	GGTCTC	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	3 cut(s)	319, 364, 587
BssT1I	CCWWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	258
BstBAI	YACGTR	2 cut(s)	211, 472
BstC8I	GCNNGC	3 cut(s)	505, 582, 599
BstDEI	CTNAG	2 cut(s)	326, 401
BstF5I	GGATG	3 cut(s)	216, 244, 523
BstKTI	GATC	3 cut(s)	322, 367, 590
BstMAI	GTCTC	2 cut(s)	399, 405
BstMBI	GATC	3 cut(s)	319, 364, 587
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 500
BstNSI	RCATGY	2 cut(s)	517, 601
BstPAI	GACNNNNGTC	1 cut(s)	356
BstSNI	TACGTA	1 cut(s)	472
BstV1I	GCAGC	2 cut(s)	226, 564
BsuRI	GGCC	4 cut(s)	18, 193, 292, 494
BtsCI	GGATG	3 cut(s)	216, 244, 523
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	3 cut(s)	505, 582, 599
Cfr13I	GGNCC	1 cut(s)	493
CseI	GACGC	2 cut(s)	27, 245
CviAII	CATG	4 cut(s)	230, 310, 514, 598
CviJI	RGCY	6 cut(s)	18, 193, 292, 422, 494, 577
CviKI_1	RGCY	6 cut(s)	18, 193, 292, 422, 494, 577
DdeI	CTNAG	2 cut(s)	326, 401
DpnI	GATC	3 cut(s)	321, 366, 589
DpnII	GATC	3 cut(s)	319, 364, 587
EaeI	YGGCCR	2 cut(s)	16, 290
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	524
Eco105I	TACGTA	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	534
Eco72I	CACGTG	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	4 cut(s)	233, 313, 517, 601
FatI	CATG	4 cut(s)	229, 309, 513, 597
Fnu4HI	GCNGC	3 cut(s)	240, 456, 578
FokI	GGATG	3 cut(s)	203, 231, 510
Fsp4HI	GCNGC	3 cut(s)	240, 456, 578
FspBI	CTAG	3 cut(s)	257, 417, 500
GluI	GCNGC	3 cut(s)	240, 456, 578
HaeIII	GGCC	4 cut(s)	18, 193, 292, 494
HapII	CCGG	2 cut(s)	125, 184
HgaI	GACGC	2 cut(s)	27, 245
Hin1II	CATG	4 cut(s)	233, 313, 517, 601
HpaII	CCGG	2 cut(s)	125, 184
HphI	GGTGA	2 cut(s)	374, 392
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	5 cut(s)	43, 298, 351, 402, 592
Hpy188III	TCNNGA	3 cut(s)	125, 163, 248
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	506, 558
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	2 cut(s)	210, 471
HpyCH4V	TGCA	1 cut(s)	584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 500
HpyF3I	CTNAG	2 cut(s)	326, 401
HpySE526I	ACGT	2 cut(s)	210, 471
Hsp92II	CATG	4 cut(s)	233, 313, 517, 601
Kpn2I	TCCGGA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	319, 364, 587
LpnPI	CCDG	9 cut(s)	138, 197, 233, 261, 324, 353, 443, 489, 594
Lsp1109I	GCAGC	2 cut(s)	226, 564
LweI	GCATC	1 cut(s)	532
MaeI	CTAG	3 cut(s)	257, 417, 500
MaeII	ACGT	2 cut(s)	210, 471
MaeIII	GTNAC	2 cut(s)	436, 472
MalI	GATC	3 cut(s)	321, 366, 589
MboI	GATC	3 cut(s)	319, 364, 587
MboII	GAAGA	3 cut(s)	54, 128, 275
MlsI	TGGCCA	1 cut(s)	18
MluCI	AATT	5 cut(s)	58, 90, 132, 171, 530
MluNI	TGGCCA	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	8 cut(s)	44, 110, 183, 213, 216, 336, 408, 567
Mox20I	TGGCCA	1 cut(s)	18
MroI	TCCGGA	1 cut(s)	124
MroXI	GAANNNNTTC	3 cut(s)	58, 132, 387
MscI	TGGCCA	1 cut(s)	18
MseI	TTAA	3 cut(s)	29, 89, 518
MslI	CAYNNNNRTG	1 cut(s)	512
Msp20I	TGGCCA	1 cut(s)	18
MspI	CCGG	2 cut(s)	125, 184
MwoI	GCNNNNNNNGC	2 cut(s)	239, 500
NdeII	GATC	3 cut(s)	319, 364, 587
NlaIII	CATG	4 cut(s)	233, 313, 517, 601
NlaIV	GGNNCC	1 cut(s)	200
NmeAIII	GCCGAG	1 cut(s)	268
NspI	RCATGY	2 cut(s)	517, 601
PaeI	GCATGC	1 cut(s)	601
PciI	ACATGT	1 cut(s)	513
PdmI	GAANNNNTTC	3 cut(s)	58, 132, 387
PflMI	CCANNNNNTGG	1 cut(s)	490
PkrI	GCNGC	3 cut(s)	241, 457, 579
PmaCI	CACGTG	1 cut(s)	211
PmlI	CACGTG	1 cut(s)	211
Ppu21I	YACGTR	2 cut(s)	211, 472
PscI	ACATGT	1 cut(s)	513
PshAI	GACNNNNGTC	1 cut(s)	356
PspCI	CACGTG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	512
SaqAI	TTAA	3 cut(s)	29, 89, 518
SatI	GCNGC	3 cut(s)	240, 456, 578
Sau3AI	GATC	3 cut(s)	319, 364, 587
Sau96I	GGNCC	1 cut(s)	493
SetI	ASST	6 cut(s)	85, 159, 213, 382, 389, 474
SfaNI	GCATC	1 cut(s)	532
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
SnaBI	TACGTA	1 cut(s)	472
SphI	GCATGC	1 cut(s)	601
Sse9I	AATT	5 cut(s)	58, 90, 132, 171, 530
SsiI	CCGC	2 cut(s)	456, 535
SspMI	CTAG	3 cut(s)	257, 417, 500
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	2 cut(s)	213, 474
TaqI	TCGA	2 cut(s)	12, 322
TasI	AATT	5 cut(s)	58, 90, 132, 171, 530
TauI	GCSGC	1 cut(s)	458
Tru1I	TTAA	3 cut(s)	29, 89, 518
Tru9I	TTAA	3 cut(s)	29, 89, 518
TscAI	CASTG	1 cut(s)	558
TseI	GCWGC	2 cut(s)	239, 577
TspDTI	ATGAA	2 cut(s)	83, 276
TspRI	CASTG	1 cut(s)	558
Van91I	CCANNNNNTGG	1 cut(s)	490
XapI	RAATTY	3 cut(s)	58, 171, 530
XceI	RCATGY	2 cut(s)	517, 601
XmnI	GAANNNNTTC	3 cut(s)	58, 132, 387
XspI	CTAG	3 cut(s)	257, 417, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.