Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005951

Physical Location & Seq

Genomic Coordinates Reverse (-)

63176003 .. 63180101

Gene Structure 4099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0458700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCGGCCTCTCAAGCAAGCCTTCTCCTCCAGAAACAGCTCAAAGATCTTTGCAAGAACCCTGTGGATGGGTTCTCGGCGGGGCTGGTCGATGAGAACAATATCTTTGAGTGGAGCGTCACAATTATTGGACCTCCCGATACGCTATATGAGGGAGGATTTTTCAACGCCATCATGAGTTTTCCTTCTAATTACCCGAACAGCCCTCCAACAGTGAAGTTTACTTCGGAGTTATGGCATCCAAATGTTTATCCTGACGGGCGTGTTTGCATTTCCATTCTTCATCCGCCTGGTGATGATCCAAATGGTTATGAGCTTGCAAGTGAGCGTTGGACACCTGTGCATACGATCTCCTCTTCCTGCATTAGTCAGTTCTTTCATACAGAAGTGGTTGAAAGCATAGTTTTGAGTATAATATCAATGCTATCCAGTCCAAATGACGAATCTCCTGCAAATGTTGAAGCTGCTAAGGAATGGAGAGATCGGAGAGATGATTTCAAGAAGAAGGTCGGCCGTTGTGTGAGAAAGTCACAAGAGATGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0031224 GO:0031974 GO:0031981 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

181

Amino Acids

20.22

Weight (kDa)

5.05

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	10 - 173	3.7e-45	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12970
fragaria_vesca	FvH4_3g43560 FvH4_3g43560
malus_domestica	MD03G1021000.v1.1 MD11G1022700.v1.1
prunus_persica	Prupe.6G018400_v2.0.a1 Prupe.6G018400_v2.0.a1 Prupe.6G018400_v2.0.a1
pyrus_communis	pycom03g01800 pycom03g01810 pycom11g01840 pycom11g01850
rosa_chinensis	RchiOBHm_Chr5g0078121
rosa_laevigata	RLG00000036753
rosa_multiflora	Rmu_co8493933.1_g000001 Rmu_sc0000670.1_g000002 Rmu_sc0019972.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000440 Rroxscaffold_1G00004010
rosa_rugosa	Rorug05G0458700 Rorug05G0458700 Rorug05G0458800
rosa_samantha	Rh5AG513300 Rh5BG536400 Rh5CG559800 Rh5DG547900
rosa_wichuraiana	Rw5G047610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 80, 287
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	511
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	4 cut(s)	166, 395, 461, 499
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	3 cut(s)	40, 316, 464
AluI	AGCT	3 cut(s)	40, 316, 464
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	2 cut(s)	6, 511
ApeKI	GCWGC	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	2 cut(s)	62, 179
BceAI	ACGGC	1 cut(s)	498
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	1 cut(s)	291
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	2 cut(s)	6, 465
BlsI	GCNGC	2 cut(s)	7, 466
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	291
BseGI	GGATG	3 cut(s)	73, 238, 283
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	2 cut(s)	17, 343
BseX3I	CGGCCG	1 cut(s)	511
BseXI	GCAGC	1 cut(s)	451
Bsh1285I	CGRYCG	1 cut(s)	514
BshFI	GGCC	2 cut(s)	8, 513
BsiEI	CGRYCG	1 cut(s)	514
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	2 cut(s)	8, 513
Bsp143I	GATC	4 cut(s)	46, 298, 348, 481
BspACI	CCGC	3 cut(s)	5, 80, 287
BspANI	GGCC	2 cut(s)	8, 513
BspHI	TCATGA	1 cut(s)	174
BspPI	GGATC	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	429
BssMI	GATC	4 cut(s)	46, 298, 348, 481
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	19, 318
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	3 cut(s)	73, 238, 283
BstKTI	GATC	4 cut(s)	49, 301, 351, 484
BstMBI	GATC	4 cut(s)	46, 298, 348, 481
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	451
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BstZI	CGGCCG	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	8, 513
BtsCI	GGATG	3 cut(s)	73, 238, 283
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	19, 318
CciI	TCATGA	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	131
CseI	GACGC	1 cut(s)	106
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	8 cut(s)	8, 21, 40, 85, 204, 316, 464, 513
CviKI_1	RGCY	8 cut(s)	8, 21, 40, 85, 204, 316, 464, 513
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	4 cut(s)	48, 300, 350, 483
DpnII	GATC	4 cut(s)	46, 298, 348, 481
EaeI	YGGCCR	1 cut(s)	511
EagI	CGGCCG	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	361
EarI	CTCTTC	1 cut(s)	361
EciI	GGCGGA	1 cut(s)	276
EclXI	CGGCCG	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	131
Eco52I	CGGCCG	1 cut(s)	511
EcoRII	CCWGG	1 cut(s)	289
FaeI	CATG	1 cut(s)	178
FaiI	YATR	9 cut(s)	148, 150, 176, 235, 312, 345, 381, 401, 413
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	1 cut(s)	174
FauI	CCCGC	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	6, 465
FokI	GGATG	3 cut(s)	80, 225, 270
Fsp4HI	GCNGC	2 cut(s)	6, 465
GluI	GCNGC	2 cut(s)	6, 465
GsuI	CTGGAG	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	8, 513
HgaI	GACGC	1 cut(s)	106
Hin1II	CATG	1 cut(s)	178
HinfI	GANTC	1 cut(s)	443
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	2 cut(s)	229, 486
Hpy188III	TCNNGA	5 cut(s)	31, 137, 175, 254, 499
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	3 cut(s)	32, 195, 499
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	6 cut(s)	54, 270, 320, 343, 363, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	468
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	46, 298, 348, 481
LmnI	GCTCC	1 cut(s)	114
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	1 cut(s)	247
MaeIII	GTNAC	2 cut(s)	118, 528
MalI	GATC	4 cut(s)	48, 300, 350, 483
MboI	GATC	4 cut(s)	46, 298, 348, 481
MboII	GAAGA	3 cut(s)	272, 348, 514
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	2 cut(s)	123, 190
MmeI	TCCRAC	2 cut(s)	233, 311
MnlI	CCTC	7 cut(s)	19, 38, 144, 145, 149, 216, 364
MslI	CAYNNNNRTG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	4 cut(s)	46, 298, 348, 481
NlaIII	CATG	1 cut(s)	178
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	2 cut(s)	118, 528
PagI	TCATGA	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	2 cut(s)	7, 466
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	243
SatI	GCNGC	2 cut(s)	6, 465
Sau3AI	GATC	4 cut(s)	46, 298, 348, 481
Sau96I	GGNCC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	6 cut(s)	42, 136, 318, 340, 466, 510
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	123, 190
SsiI	CCGC	3 cut(s)	5, 80, 287
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	123, 190
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	443
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	2 cut(s)	118, 528
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	2 cut(s)	118, 528
TspDTI	ATGAA	2 cut(s)	272, 368
TspRI	CASTG	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.