Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007275

Physical Location & Seq

Genomic Coordinates Forward (+)

15600067 .. 15600944

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAGAGTGATTGGATTTCCTTAACTGATGACTTGCGAGTAGATCTTGAATCCATCCGCGGGCGAGCAGAGAGAGTGGAGATGGAATTGAAATTGGAAAAGCAAAAAACTGAAGAGTTGGATGATGTGCTTCAAAGATCTGTCCTTGGGCATGCTCGCATGGTTGAACACTATGTTGAACTACAAGATAAATATAATGACTTGGTTGCGAAGTACCGTGCAATCATGGCAGGAATAGCAGAAGTGAAGAGGGCAGCGGCAAAAGCAGGAGCAAAAGGTCGTGGATCTCGCTTTTCGAAATCCCTGGCAACAGAGCTCTCAGTTTTGAGAGTGGAAAGAGAGAGGGAGAGGGAGCTGTTGAAGAAGGAGAACAAGAGTCTCAAGATTCAACTGAGAGATACTGCAGAAGCTGTTCATGCTGCCGGAGAACTCCTTGTTAGGCTTAGAGAAGCTGAACATTCCGCATCAGTTGCAGAGGAGAACTTTATGAATGTGCATCAAGAAAACGAAAAGTTGAAGAAGCAAATGGAGAAGCTTAAAAGAAAGCACAAGATGGAGATGATCACCATGAAGCAGTACATGGCAGATAGTAAACTGCCAGAGTCCGCTTTGCAACCACTATACCGGGAAGACTCTGTCATTCCGCACAACACAGACGATGATCAGGCATGGAGAGCAGAATTCGGAGCTATATATCAAGAGCATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005873 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0008283 GO:0008574 GO:0009987 GO:0015630 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048002 GO:0048193 GO:0051179 GO:0051234 GO:0097159 GO:1901363 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

237

Amino Acids

27.41

Weight (kDa)

6.29

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20150 AT3G20150 AT4G26660 AT5G55520 AT5G55520
fragaria_vesca	FvH4_3g23930 FvH4_3g23930 FvH4_3g23930
malus_domestica	MD03G1189700.v1.1 MD11G1206000.v1.1
prunus_persica	Prupe.4G231600_v2.0.a1
pyrus_communis	pycom03g14250 pycom03g14260 pycom11g17870
rosa_chinensis	RchiOBHm_Chr5g0042431
rosa_laevigata	RLG00000034123
rosa_multiflora	Rmu_sc0002779.1_g000010 Rmu_sc0003219.1_g000025
rosa_roxburghii	Rroxscaffold_1G00038280
rosa_rugosa	Rorug05G0200000
rosa_samantha	Rh5AG286200 Rh5BG290900 Rh5CG322900 Rh5DG300600
rosa_wichuraiana	Rw5G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	60
AciI	CCGC	6 cut(s)	58, 60, 257, 462, 606, 644
AclWI	GGATC	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	680
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	2 cut(s)	215, 578
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	8 cut(s)	50, 91, 134, 167, 179, 361, 389, 517
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	6 cut(s)	316, 355, 410, 452, 535, 689
AluI	AGCT	6 cut(s)	316, 355, 410, 452, 535, 689
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	1 cut(s)	292
AlwNI	CAGNNNCTG	1 cut(s)	410
ApeKI	GCWGC	2 cut(s)	254, 419
ApoI	RAATTY	1 cut(s)	680
Asp700I	GAANNNNTTC	1 cut(s)	411
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	1 cut(s)	556
AsuII	TTCGAA	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	636
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	266, 406
BccI	CCATC	3 cut(s)	62, 76, 547
BciT130I	CCWGG	1 cut(s)	305
BclI	TGATCA	2 cut(s)	561, 661
BcnI	CCSGG	1 cut(s)	626
BcoDI	GTCTC	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	402
BglII	AGATCT	2 cut(s)	43, 137
BisI	GCNGC	3 cut(s)	255, 258, 420
BlsI	GCNGC	3 cut(s)	256, 259, 421
Bme1390I	CCNGG	2 cut(s)	305, 626
BmrFI	CCNGG	2 cut(s)	305, 626
BmsI	GCATC	2 cut(s)	473, 505
BpiI	GAAGAC	1 cut(s)	636
Bpu14I	TTCGAA	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	626
BsaJI	CCNNGG	3 cut(s)	58, 145, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	3 cut(s)	58, 145, 303
BseGI	GGATG	2 cut(s)	54, 127
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	333, 383
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	266, 406
Bsh1236I	CGCG	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	423, 625
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	383
Bsp119I	TTCGAA	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	5 cut(s)	43, 137, 284, 561, 661
BspACI	CCGC	6 cut(s)	58, 60, 257, 462, 606, 644
BspCNI	CTCAG	2 cut(s)	332, 384
BspFNI	CGCG	1 cut(s)	60
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	1 cut(s)	292
BspT104I	TTCGAA	1 cut(s)	296
BssECI	CCNNGG	3 cut(s)	58, 145, 303
BssMI	GATC	5 cut(s)	43, 137, 284, 561, 661
BssT1I	CCWWGG	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	2 cut(s)	108, 242
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	296
BstC8I	GCNNGC	4 cut(s)	62, 66, 153, 157
BstDEI	CTNAG	3 cut(s)	319, 392, 443
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	54, 127
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	5 cut(s)	46, 140, 287, 564, 664
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	5 cut(s)	43, 137, 284, 561, 661
BstMWI	GCNNNNNNNGC	6 cut(s)	227, 236, 263, 416, 470, 674
BstNI	CCWGG	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	303, 624
BstSFI	CTRYAG	1 cut(s)	402
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	266, 406
BstV2I	GAAGAC	1 cut(s)	636
BstX2I	RGATCY	3 cut(s)	43, 137, 284
BstYI	RGATCY	3 cut(s)	43, 137, 284
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	54, 127
Cac8I	GCNNGC	4 cut(s)	62, 66, 153, 157
CaiI	CAGNNNCTG	1 cut(s)	410
Cfr42I	CCGCGG	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	214, 577
CviAII	CATG	7 cut(s)	152, 160, 226, 416, 568, 580, 669
CviJI	RGCY	7 cut(s)	316, 355, 410, 442, 452, 535, 689
CviKI_1	RGCY	7 cut(s)	316, 355, 410, 442, 452, 535, 689
CviQI	GTAC	2 cut(s)	214, 577
DdeI	CTNAG	3 cut(s)	319, 392, 443
DpnI	GATC	5 cut(s)	45, 139, 286, 563, 663
DpnII	GATC	5 cut(s)	43, 137, 284, 561, 661
Eam1104I	CTCTTC	2 cut(s)	108, 242
EarI	CTCTTC	2 cut(s)	108, 242
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	318
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	145
FaeI	CATG	7 cut(s)	155, 163, 229, 419, 571, 583, 672
FatI	CATG	7 cut(s)	151, 159, 225, 415, 567, 579, 668
FauI	CCCGC	1 cut(s)	53
FbaI	TGATCA	2 cut(s)	561, 661
Fnu4HI	GCNGC	3 cut(s)	255, 258, 420
FokI	GGATG	2 cut(s)	41, 134
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	3 cut(s)	255, 258, 420
GluI	GCNGC	3 cut(s)	255, 258, 420
HapII	CCGG	2 cut(s)	423, 625
Hin1II	CATG	7 cut(s)	155, 163, 229, 419, 571, 583, 672
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	5 cut(s)	50, 376, 385, 602, 632
HpaII	CCGG	2 cut(s)	423, 625
HphI	GGTGA	1 cut(s)	556
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	1 cut(s)	686
Hpy188III	TCNNGA	4 cut(s)	47, 382, 500, 698
Hpy8I	GTNNAC	1 cut(s)	593
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	5 cut(s)	221, 404, 473, 496, 613
HpyF10VI	GCNNNNNNNGC	6 cut(s)	227, 236, 263, 416, 470, 674
HpyF3I	CTNAG	3 cut(s)	319, 392, 443
Hsp92II	CATG	7 cut(s)	155, 163, 229, 419, 571, 583, 672
Ksp22I	TGATCA	2 cut(s)	561, 661
KspI	CCGCGG	1 cut(s)	61
Kzo9I	GATC	5 cut(s)	43, 137, 284, 561, 661
LmnI	GCTCC	3 cut(s)	269, 352, 686
LpnPI	CCDG	8 cut(s)	216, 252, 290, 317, 436, 612, 638, 650
Lsp1109I	GCAGC	2 cut(s)	266, 406
LweI	GCATC	2 cut(s)	473, 505
MalI	GATC	5 cut(s)	45, 139, 286, 563, 663
MboI	GATC	5 cut(s)	43, 137, 284, 561, 661
MboII	GAAGA	5 cut(s)	125, 259, 373, 529, 641
MflI	RGATCY	3 cut(s)	43, 137, 284
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	3 cut(s)	86, 92, 680
MlyI	GAGTC	3 cut(s)	385, 611, 626
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	4 cut(s)	243, 336, 342, 469
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	2 cut(s)	23, 537
MspA1I	CMGCKG	2 cut(s)	60, 257
MspI	CCGG	2 cut(s)	423, 625
MspR9I	CCNGG	2 cut(s)	305, 626
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	6 cut(s)	227, 236, 263, 416, 470, 674
NciI	CCSGG	1 cut(s)	626
NdeII	GATC	5 cut(s)	43, 137, 284, 561, 661
NlaIII	CATG	7 cut(s)	155, 163, 229, 419, 571, 583, 672
NspI	RCATGY	1 cut(s)	155
NspV	TTCGAA	1 cut(s)	296
PaeI	GCATGC	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	50, 385
PflFI	GACNNNGTC	1 cut(s)	635
PkrI	GCNGC	3 cut(s)	256, 259, 421
PleI	GAGTC	3 cut(s)	384, 610, 626
PpsI	GAGTC	3 cut(s)	384, 610, 626
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	3 cut(s)	43, 137, 284
PsyI	GACNNNGTC	1 cut(s)	635
RsaI	GTAC	2 cut(s)	215, 578
RsaNI	GTAC	2 cut(s)	214, 577
SacI	GAGCTC	1 cut(s)	318
SacII	CCGCGG	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	23, 537
SatI	GCNGC	3 cut(s)	255, 258, 420
Sau3AI	GATC	5 cut(s)	43, 137, 284, 561, 661
SchI	GAGTC	3 cut(s)	385, 611, 626
ScrFI	CCNGG	2 cut(s)	305, 626
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	7 cut(s)	280, 318, 357, 412, 454, 537, 691
SfaNI	GCATC	2 cut(s)	473, 505
SfcI	CTRYAG	1 cut(s)	402
Sfr303I	CCGCGG	1 cut(s)	61
SfuI	TTCGAA	1 cut(s)	296
SgrBI	CCGCGG	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
SphI	GCATGC	1 cut(s)	155
Sse9I	AATT	3 cut(s)	86, 92, 680
SsiI	CCGC	6 cut(s)	58, 60, 257, 462, 606, 644
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	303, 624
StyI	CCWWGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	218
TaqI	TCGA	1 cut(s)	296
TasI	AATT	3 cut(s)	86, 92, 680
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	2 cut(s)	50, 385
Tru1I	TTAA	2 cut(s)	23, 537
Tru9I	TTAA	2 cut(s)	23, 537
TseI	GCWGC	2 cut(s)	254, 419
TspDTI	ATGAA	3 cut(s)	404, 503, 584
Tth111I	GACNNNGTC	1 cut(s)	635
XapI	RAATTY	1 cut(s)	680
XceI	RCATGY	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.