Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007275

Physical Location & Seq

Genomic Coordinates Reverse (-)

19805485 .. 19806255

Gene Structure 771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0200000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCAGTTCACGATGATCCTCCTCCGGGCTACAGGTTTAGGCCTGACACAGAACAACTACTTGTTCATTATCTTCGTCCCATACTCGACGGAGAAGACTTTCCCCAAGGGCTTGTCCCTTTCTGCGATCTCTACGGAGAACAAGAACCATGGCAGATATGGGATGCTTTCAAAGAATTATCTGAGAAAGACCAAGGAAGAACAGACCTGTACTTCATTACCCAACACAAGACGAAGACCCCAAAGGGCAAGCGCAAAAGCCGAACAGTCGGTGGCGGCACCTGGAAAGGCGATGACGCCGCAGGGAAAGTACTTTCGGCTTCTCGAAGGGTTATTGGCAGGAGAAAAAGATTCCATTACAAGAACGATGGCTCGACGCAAAACGGTCGCTGGCTCATGCACGAGTTTGAACTTGATGCTTCTTTACTGCGAAACAAACGTAAAGCGAAGGAATATGTTCTTTGTATTCTTAGAAAGAATAATAGGTCGGTGAAAAAGAATTCAGAAGGACAAGAGGGTCAAGAAGAAGATGAGATCATGAGTTGCGACGGTGGTGATGATCAACAAGATGGAGACCTTCCTGAACCTGAGTTCGTTGAAGAAGAGACCAGTACTACTCAAAAACCAGACGAACTTCGAAAATATGCGATGGAGTTTGAGGTATACCTAAAGAAACAGACTGCTGACCAGGCTGTGAAAAAGAAAGATCATAAAGATTCACATAAAATGAGCTTAGAAGATATAGAGAACCACCTGATGAGTGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005873 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0008283 GO:0008574 GO:0009987 GO:0015630 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048002 GO:0048193 GO:0051179 GO:0051234 GO:0097159 GO:1901363 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

256

Amino Acids

29.71

Weight (kDa)

5.71

Isoelectric Point (pI)

68.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	8 - 138	1.4e-27	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20150 AT3G20150 AT4G26660 AT5G55520 AT5G55520
fragaria_vesca	FvH4_3g23930 FvH4_3g23930 FvH4_3g23930
malus_domestica	MD03G1189700.v1.1 MD11G1206000.v1.1
prunus_persica	Prupe.4G231600_v2.0.a1
pyrus_communis	pycom03g14250 pycom03g14260 pycom11g17870
rosa_chinensis	RchiOBHm_Chr5g0042431
rosa_laevigata	RLG00000034123
rosa_multiflora	Rmu_sc0002779.1_g000010 Rmu_sc0003219.1_g000025
rosa_roxburghii	Rroxscaffold_1G00038280
rosa_rugosa	Rorug05G0200000
rosa_samantha	Rh5AG286200 Rh5BG290900 Rh5CG322900 Rh5DG300600
rosa_wichuraiana	Rw5G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	516
AccB1I	GGYRCC	1 cut(s)	278
AccI	GTMKAC	1 cut(s)	663
AciI	CCGC	2 cut(s)	276, 300
AclWI	GGATC	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	499
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	3 cut(s)	212, 312, 613
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	172, 410, 599
AjnI	CCWGG	2 cut(s)	281, 687
AluBI	AGCT	1 cut(s)	732
AluI	AGCT	1 cut(s)	732
Alw26I	GTCTC	2 cut(s)	567, 599
AlwI	GGATC	1 cut(s)	11
AoxI	GGCC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	499
Asp700I	GAANNNNTTC	2 cut(s)	99, 456
AspLEI	GCGC	1 cut(s)	255
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	502, 566
AsuII	TTCGAA	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	278
BauI	CACGAG	1 cut(s)	401
BbsI	GAAGAC	2 cut(s)	102, 242
BccI	CCATC	3 cut(s)	362, 563, 643
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	2 cut(s)	283, 689
BclI	TGATCA	1 cut(s)	559
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	567, 599
BfmI	CTRYAG	1 cut(s)	31
BisI	GCNGC	2 cut(s)	277, 300
BlsI	GCNGC	2 cut(s)	278, 301
BmcAI	AGTACT	2 cut(s)	312, 613
Bme1390I	CCNGG	3 cut(s)	27, 283, 689
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	3 cut(s)	27, 283, 689
BmsI	GCATC	2 cut(s)	154, 406
BpiI	GAAGAC	2 cut(s)	102, 242
Bpu14I	TTCGAA	1 cut(s)	637
BpuMI	CCSGG	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	297
BsaI	GGTCTC	2 cut(s)	567, 599
BsaJI	CCNNGG	3 cut(s)	106, 149, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	609
BseBI	CCWGG	2 cut(s)	283, 689
BseDI	CCNNGG	3 cut(s)	106, 149, 193
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	2 cut(s)	174, 579
BseNI	ACTGG	1 cut(s)	609
BseRI	GAGGAG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	1 cut(s)	43
BshNI	GGYRCC	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	2 cut(s)	63, 101
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	567, 599
BsmFI	GGGAC	2 cut(s)	63, 101
BsnI	GGCC	1 cut(s)	43
Bso31I	GGTCTC	2 cut(s)	567, 599
Bsp119I	TTCGAA	1 cut(s)	637
Bsp143I	GATC	5 cut(s)	16, 127, 534, 559, 706
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	2 cut(s)	276, 300
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	2 cut(s)	175, 580
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	11
BspT104I	TTCGAA	1 cut(s)	637
BspT107I	GGYRCC	1 cut(s)	278
BspTNI	GGTCTC	2 cut(s)	567, 599
BsrI	ACTGG	1 cut(s)	609
BssECI	CCNNGG	3 cut(s)	106, 149, 193
BssMI	GATC	5 cut(s)	16, 127, 534, 559, 706
BssNAI	GTATAC	1 cut(s)	664
BssNI	GRCGYC	1 cut(s)	297
BssSI	CACGAG	1 cut(s)	401
BssT1I	CCWWGG	3 cut(s)	106, 149, 193
Bst1107I	GTATAC	1 cut(s)	664
Bst2BI	CACGAG	1 cut(s)	401
Bst2UI	CCWGG	2 cut(s)	283, 689
Bst4CI	ACNGT	3 cut(s)	268, 386, 551
Bst6I	CTCTTC	1 cut(s)	597
BstACI	GRCGYC	1 cut(s)	297
BstBI	TTCGAA	1 cut(s)	637
BstC8I	GCNNGC	2 cut(s)	251, 392
BstDEI	CTNAG	4 cut(s)	183, 470, 588, 733
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	5 cut(s)	19, 130, 537, 562, 709
BstMAI	GTCTC	2 cut(s)	567, 599
BstMBI	GATC	5 cut(s)	16, 127, 534, 559, 706
BstMCI	CGRYCG	1 cut(s)	388
BstMWI	GCNNNNNNNGC	1 cut(s)	689
BstNI	CCWGG	2 cut(s)	283, 689
BstSCI	CCNGG	3 cut(s)	25, 281, 687
BstSFI	CTRYAG	1 cut(s)	31
BstV2I	GAAGAC	2 cut(s)	102, 242
BstZ17I	GTATAC	1 cut(s)	664
BsuRI	GGCC	1 cut(s)	43
BtgI	CCRYGG	1 cut(s)	149
BtgZI	GCGATG	2 cut(s)	306, 662
BtsCI	GGATG	1 cut(s)	169
Cac8I	GCNNGC	2 cut(s)	251, 392
CciI	TCATGA	1 cut(s)	537
CfoI	GCGC	1 cut(s)	255
CseI	GACGC	2 cut(s)	305, 385
Csp6I	GTAC	3 cut(s)	211, 311, 612
CviAII	CATG	3 cut(s)	150, 397, 538
CviJI	RGCY	9 cut(s)	30, 43, 112, 261, 320, 372, 394, 692, 732
CviKI_1	RGCY	9 cut(s)	30, 43, 112, 261, 320, 372, 394, 692, 732
CviQI	GTAC	3 cut(s)	211, 311, 612
DdeI	CTNAG	4 cut(s)	183, 470, 588, 733
DpnI	GATC	5 cut(s)	18, 129, 536, 561, 708
DpnII	GATC	5 cut(s)	16, 127, 534, 559, 706
DrdI	GACNNNNNNGTC	1 cut(s)	516
DseDI	GACNNNNNNGTC	1 cut(s)	516
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Eco130I	CCWWGG	3 cut(s)	106, 149, 193
Eco147I	AGGCCT	1 cut(s)	43
Eco31I	GGTCTC	2 cut(s)	567, 599
EcoRI	GAATTC	1 cut(s)	499
EcoRII	CCWGG	2 cut(s)	281, 687
EcoT14I	CCWWGG	3 cut(s)	106, 149, 193
ErhI	CCWWGG	3 cut(s)	106, 149, 193
FaeI	CATG	3 cut(s)	153, 400, 541
FaqI	GGGAC	2 cut(s)	63, 101
FatI	CATG	3 cut(s)	149, 396, 537
FbaI	TGATCA	1 cut(s)	559
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	2 cut(s)	277, 300
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	277, 300
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	2 cut(s)	277, 300
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	2 cut(s)	305, 385
HhaI	GCGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	3 cut(s)	153, 400, 541
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	351, 716
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	502, 566
Hpy166II	GTNNAC	2 cut(s)	10, 664
Hpy188I	TCNGA	2 cut(s)	184, 505
Hpy188III	TCNNGA	5 cut(s)	11, 324, 521, 538, 581
Hpy8I	GTNNAC	2 cut(s)	10, 664
Hpy99I	CGWCG	3 cut(s)	92, 379, 551
HpyAV	CCTTC	4 cut(s)	321, 442, 500, 587
HpyCH4III	ACNGT	3 cut(s)	268, 386, 551
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	1 cut(s)	400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	689
HpyF3I	CTNAG	4 cut(s)	183, 470, 588, 733
HpySE526I	ACGT	1 cut(s)	439
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	153, 400, 541
HspAI	GCGC	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	5 cut(s)	16, 127, 534, 559, 706
LweI	GCATC	2 cut(s)	154, 406
MaeII	ACGT	1 cut(s)	439
MalI	GATC	5 cut(s)	18, 129, 536, 561, 708
MboI	GATC	5 cut(s)	16, 127, 534, 559, 706
MboII	GAAGA	9 cut(s)	65, 107, 210, 247, 536, 539, 611, 614, 749
MluCI	AATT	2 cut(s)	176, 499
MnlI	CCTC	4 cut(s)	30, 33, 508, 652
MroXI	GAANNNNTTC	2 cut(s)	99, 456
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	3 cut(s)	27, 283, 689
MvaI	CCWGG	2 cut(s)	283, 689
MwoI	GCNNNNNNNGC	1 cut(s)	689
NciI	CCSGG	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	5 cut(s)	16, 127, 534, 559, 706
NlaIII	CATG	3 cut(s)	153, 400, 541
NlaIV	GGNNCC	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	637
PagI	TCATGA	1 cut(s)	537
PceI	AGGCCT	1 cut(s)	43
PdmI	GAANNNNTTC	2 cut(s)	99, 456
PfeI	GAWTC	2 cut(s)	351, 716
PkrI	GCNGC	2 cut(s)	278, 301
Psp6I	CCWGG	2 cut(s)	281, 687
PspGI	CCWGG	2 cut(s)	281, 687
PspN4I	GGNNCC	1 cut(s)	280
RsaI	GTAC	3 cut(s)	212, 312, 613
RsaNI	GTAC	3 cut(s)	211, 311, 612
SatI	GCNGC	2 cut(s)	277, 300
Sau3AI	GATC	5 cut(s)	16, 127, 534, 559, 706
ScaI	AGTACT	2 cut(s)	312, 613
ScrFI	CCNGG	3 cut(s)	27, 283, 689
SfaNI	GCATC	2 cut(s)	154, 406
SfcI	CTRYAG	1 cut(s)	31
SfuI	TTCGAA	1 cut(s)	637
Sse9I	AATT	2 cut(s)	176, 499
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	2 cut(s)	276, 300
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	3 cut(s)	25, 281, 687
StyI	CCWWGG	3 cut(s)	106, 149, 193
TaaI	ACNGT	3 cut(s)	268, 386, 551
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	4 cut(s)	87, 325, 374, 637
TasI	AATT	2 cut(s)	176, 499
TatI	WGTACW	3 cut(s)	210, 310, 611
TauI	GCSGC	2 cut(s)	279, 302
TfiI	GAWTC	2 cut(s)	351, 716
TspDTI	ATGAA	2 cut(s)	56, 205
TspGWI	ACGGA	2 cut(s)	105, 150
XapI	RAATTY	1 cut(s)	499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
XmiI	GTMKAC	1 cut(s)	663
XmnI	GAANNNNTTC	2 cut(s)	99, 456
ZrmI	AGTACT	2 cut(s)	312, 613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.