Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006514

Physical Location & Seq

Genomic Coordinates Reverse (-)

17307865 .. 17310250

Gene Structure 2386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCTGCAATGGAATCTCTCGCGAGGGAAAGAGAGGCTAGACTTGAAATTGAGCGATCACAAAATTCCCTATCGGATGAGCATGGGAGAGTTCAAAGAGAGCTTTCAAGTGCTACGCAGAAGATAACTTCACTGAATGATATGTACAAACGATTGCAAGAATACATTGCAAGCTTGCAACAGTACAATAGTAAACTGCACAACGACCTCTCTACAGTTGAGGAAGACTTTAAGCGCGTAGAGAAGGAAAAAGTTTGTATGGTGGAGAACCTGAGCATGCTAAGGGGTCAACTTTCAGTGTCCAGACAAACTCAAGATGATGCTATAAAGCAAAGGGATGCTTTGGTAAATGAAGTTGCATCCCTTAGGATGGAGTTGCAGCAAGTGAGAGATGATCGGGATCGTCATAAACTCCAAGTGCAGACCCTAACAGCTGAATATACAACATACAAAGAATCCACCGAGAAATCTAGTTTTGAGGTGGATAACCTCAAATCAAAATATACCAAACTGGAGGTAAGATGTCTGTCTCAGACTGACCAGATAAGGACATTGAAGGACCAACTAATGATTGCAGAGGGGAAAGTACAGATGTCCAACTTAACTACACTGGAAACAAGAACTGAATATGAAGGGCAAAAGAAACTTATAAGTGAGTTACAAACTCGCCTGGCAGATGCAGAATTCAAACTTATTGAAGGAGAAATGCTGCGTAAAAAGTTGCACAACACTATCTTGGAACTAAAAGGGAACATCCGTGTATTCTGTCGAGTGCGACCTTTGTTGGCGGATGAAGACGTAAGCACTGAAGGGAAGGTTATCTCTTATCCAACATCAATGGATGCTCTTGGACGGGGCATTGATTTAGTGCAACCTGGGCAAAAACATTCTTTCACATTTGACAGAGTTTTTATGCCTGAAATATCACAAGAAGATGTGTTTGAAGACATTTCACAGCTCGTACAAAGTGCTCTTGATGGTTATAAGGTTTGCATTTTTGCCTATGGTCAGACAGGATCGATCAGGGAAAACCTATACCATGATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin Microtub_bd

Protein Analysis

350

Amino Acids

40.26

Weight (kDa)

5.51

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27180 AT4G27180 AT5G54670 AT5G54670 AT5G54670
fragaria_vesca	FvH4_3g21681 FvH4_3g21681 FvH4_3g21681 FvH4_3g21681 FvH4_3g21681
malus_domestica	MD03G1212900.v1.1 MD11G1228000.v1.1
prunus_persica	Prupe.4G201200_v2.0.a1 Prupe.4G201200_v2.0.a1
pyrus_communis	pycom03g16170 pycom11g20070
rosa_chinensis	RchiOBHm_Chr5g0037181
rosa_laevigata	RLG00000033756
rosa_multiflora	Rmu_sc0030361.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043800
rosa_rugosa	Rorug05G0161400
rosa_samantha	Rh5AG253000 Rh5BG254900 Rh5CG287600 Rh5DG263400
rosa_wichuraiana	Rw5G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	650, 984
AccII	CGCG	2 cut(s)	23, 237
AciI	CCGC	1 cut(s)	788
AclWI	GGATC	2 cut(s)	408, 1024
AcsI	RAATTY	2 cut(s)	64, 683
AcuI	CTGAAG	1 cut(s)	828
AfaI	GTAC	4 cut(s)	146, 185, 588, 963
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	7 cut(s)	47, 95, 108, 556, 688, 698, 944
AjnI	CCWGG	2 cut(s)	669, 874
AluBI	AGCT	4 cut(s)	103, 174, 434, 958
AluI	AGCT	4 cut(s)	103, 174, 434, 958
Alw21I	GWGCWC	1 cut(s)	973
Alw26I	GTCTC	1 cut(s)	534
AlwI	GGATC	2 cut(s)	408, 1024
ApeKI	GCWGC	3 cut(s)	5, 379, 709
ApoI	RAATTY	2 cut(s)	64, 683
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	559
AvaII	GGWCC	1 cut(s)	559
AxyI	CCTNAGG	1 cut(s)	365
BbsI	GAAGAC	3 cut(s)	231, 801, 951
Bbv12I	GWGCWC	1 cut(s)	973
BbvI	GCAGC	2 cut(s)	391, 696
BccI	CCATC	3 cut(s)	364, 971, 1037
BciT130I	CCWGG	2 cut(s)	671, 876
BcoDI	GTCTC	1 cut(s)	534
BfaI	CTAG	2 cut(s)	39, 471
BfmI	CTRYAG	1 cut(s)	213
BisI	GCNGC	3 cut(s)	6, 380, 710
BlsI	GCNGC	3 cut(s)	7, 381, 711
Bme1390I	CCNGG	2 cut(s)	671, 876
Bme18I	GGWCC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	559
BmrFI	CCNGG	2 cut(s)	671, 876
BmsI	GCATC	5 cut(s)	310, 328, 368, 667, 832
BpiI	GAAGAC	3 cut(s)	231, 801, 951
BpmI	CTGGAG	1 cut(s)	533
Bpu10I	CCTNAGC	2 cut(s)	272, 281
BpuEI	CTTGAG	1 cut(s)	297
Bsa29I	ATCGAT	1 cut(s)	1019
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	875
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse1I	ACTGG	2 cut(s)	516, 615
Bse21I	CCTNAGG	1 cut(s)	365
Bse3DI	GCAATG	2 cut(s)	15, 165
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	2 cut(s)	671, 876
BseCI	ATCGAT	1 cut(s)	1019
BseDI	CCNNGG	1 cut(s)	875
BseGI	GGATG	7 cut(s)	82, 343, 359, 375, 753, 796, 847
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMI	GCAATG	2 cut(s)	15, 165
BseMII	CTCAG	2 cut(s)	263, 545
BseNI	ACTGG	2 cut(s)	516, 615
BseXI	GCAGC	2 cut(s)	391, 696
BsgI	GTGCAG	2 cut(s)	182, 440
Bsh1236I	CGCG	2 cut(s)	23, 237
BshVI	ATCGAT	1 cut(s)	1019
BsiHKAI	GWGCWC	1 cut(s)	973
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	1 cut(s)	534
Bsp1286I	GDGCHC	1 cut(s)	973
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	5 cut(s)	56, 394, 400, 1016, 1020
Bsp68I	TCGCGA	1 cut(s)	23
BspACI	CCGC	1 cut(s)	788
BspCNI	CTCAG	2 cut(s)	264, 544
BspDI	ATCGAT	1 cut(s)	1019
BspFNI	CGCG	2 cut(s)	23, 237
BspPI	GGATC	2 cut(s)	408, 1024
BsrDI	GCAATG	2 cut(s)	15, 165
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	516, 615
BssECI	CCNNGG	1 cut(s)	875
BssMI	GATC	5 cut(s)	56, 394, 400, 1016, 1020
Bst2UI	CCWGG	2 cut(s)	671, 876
Bst4CI	ACNGT	2 cut(s)	183, 217
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	3 cut(s)	172, 176, 278
BstDEI	CTNAG	4 cut(s)	272, 281, 365, 531
BstF5I	GGATG	7 cut(s)	82, 343, 359, 375, 753, 796, 847
BstFNI	CGCG	2 cut(s)	23, 237
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	5 cut(s)	59, 397, 403, 1019, 1023
BstMAI	GTCTC	1 cut(s)	534
BstMBI	GATC	5 cut(s)	56, 394, 400, 1016, 1020
BstMWI	GCNNNNNNNGC	1 cut(s)	877
BstNI	CCWGG	2 cut(s)	671, 876
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	2 cut(s)	669, 874
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	2 cut(s)	23, 237
BstV1I	GCAGC	2 cut(s)	391, 696
BstV2I	GAAGAC	3 cut(s)	231, 801, 951
Bsu15I	ATCGAT	1 cut(s)	1019
Bsu36I	CCTNAGG	1 cut(s)	365
BsuTUI	ATCGAT	1 cut(s)	1019
BtsCI	GGATG	7 cut(s)	82, 343, 359, 375, 753, 796, 847
BtsIMutI	CAGTG	4 cut(s)	131, 303, 608, 804
BtuMI	TCGCGA	1 cut(s)	23
Cac8I	GCNNGC	3 cut(s)	172, 176, 278
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	559
ClaI	ATCGAT	1 cut(s)	1019
Csp6I	GTAC	4 cut(s)	145, 184, 587, 962
CviAII	CATG	3 cut(s)	83, 277, 1040
CviJI	RGCY	6 cut(s)	5, 38, 103, 174, 434, 958
CviKI_1	RGCY	6 cut(s)	5, 38, 103, 174, 434, 958
CviQI	GTAC	4 cut(s)	145, 184, 587, 962
DdeI	CTNAG	4 cut(s)	272, 281, 365, 531
DpnI	GATC	5 cut(s)	58, 396, 402, 1018, 1022
DpnII	GATC	5 cut(s)	56, 394, 400, 1016, 1020
EciI	GGCGGA	1 cut(s)	803
Eco47I	GGWCC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	828
Eco81I	CCTNAGG	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	669, 874
FaeI	CATG	3 cut(s)	86, 280, 1043
FalI	AAGNNNNNCTT	2 cut(s)	325, 357
FatI	CATG	3 cut(s)	82, 276, 1039
Fnu4HI	GCNGC	3 cut(s)	6, 380, 710
FokI	GGATG	7 cut(s)	89, 346, 350, 382, 740, 803, 854
Fsp4HI	GCNGC	3 cut(s)	6, 380, 710
FspBI	CTAG	2 cut(s)	39, 471
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	3 cut(s)	6, 380, 710
GsuI	CTGGAG	1 cut(s)	533
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	86, 280, 1043
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	290
HindII	GTYRAC	1 cut(s)	290
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	2 cut(s)	14, 455
Hpy166II	GTNNAC	2 cut(s)	194, 290
Hpy188I	TCNGA	3 cut(s)	76, 534, 1011
Hpy188III	TCNNGA	5 cut(s)	22, 303, 314, 398, 974
Hpy8I	GTNNAC	2 cut(s)	194, 290
HpyAV	CCTTC	6 cut(s)	238, 550, 626, 692, 803, 808
HpyCH4III	ACNGT	2 cut(s)	183, 217
HpyCH4IV	ACGT	1 cut(s)	798
HpyF10VI	GCNNNNNNNGC	1 cut(s)	877
HpyF3I	CTNAG	4 cut(s)	272, 281, 365, 531
HpySE526I	ACGT	1 cut(s)	798
Hsp92II	CATG	3 cut(s)	86, 280, 1043
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	56, 394, 400, 1016, 1020
Lsp1109I	GCAGC	2 cut(s)	391, 696
LweI	GCATC	5 cut(s)	310, 328, 368, 667, 832
MaeI	CTAG	2 cut(s)	39, 471
MaeII	ACGT	1 cut(s)	798
MaeIII	GTNAC	1 cut(s)	657
MalI	GATC	5 cut(s)	58, 396, 402, 1018, 1022
MboI	GATC	5 cut(s)	56, 394, 400, 1016, 1020
MboII	GAAGA	5 cut(s)	133, 236, 806, 944, 956
MhlI	GDGCHC	1 cut(s)	973
MluCI	AATT	3 cut(s)	48, 64, 683
MmeI	TCCRAC	2 cut(s)	621, 854
MnlI	CCTC	8 cut(s)	18, 28, 214, 218, 472, 500, 508, 571
MseI	TTAA	2 cut(s)	231, 602
MspA1I	CMGCKG	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	671, 876
MvaI	CCWGG	2 cut(s)	671, 876
MvnI	CGCG	2 cut(s)	23, 237
MwoI	GCNNNNNNNGC	1 cut(s)	877
NdeII	GATC	5 cut(s)	56, 394, 400, 1016, 1020
NlaIII	CATG	3 cut(s)	86, 280, 1043
NruI	TCGCGA	1 cut(s)	23
NspI	RCATGY	1 cut(s)	280
PaeI	GCATGC	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	14, 455
PkrI	GCNGC	3 cut(s)	7, 381, 711
PsiI	TTATAA	2 cut(s)	650, 984
Psp6I	CCWGG	2 cut(s)	669, 874
PspGI	CCWGG	2 cut(s)	669, 874
PspPI	GGNCC	1 cut(s)	559
PvuII	CAGCTG	1 cut(s)	434
RruI	TCGCGA	1 cut(s)	23
RsaI	GTAC	4 cut(s)	146, 185, 588, 963
RsaNI	GTAC	4 cut(s)	145, 184, 587, 962
SaqAI	TTAA	2 cut(s)	231, 602
SatI	GCNGC	3 cut(s)	6, 380, 710
Sau3AI	GATC	5 cut(s)	56, 394, 400, 1016, 1020
Sau96I	GGNCC	1 cut(s)	559
ScrFI	CCNGG	2 cut(s)	671, 876
SduI	GDGCHC	1 cut(s)	973
SfaNI	GCATC	5 cut(s)	310, 328, 368, 667, 832
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	559
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
SphI	GCATGC	1 cut(s)	280
Sse9I	AATT	3 cut(s)	48, 64, 683
SsiI	CCGC	1 cut(s)	788
SspMI	CTAG	2 cut(s)	39, 471
StyD4I	CCNGG	2 cut(s)	669, 874
TaaI	ACNGT	2 cut(s)	183, 217
TaiI	ACGT	1 cut(s)	801
TaqI	TCGA	2 cut(s)	769, 1019
TasI	AATT	3 cut(s)	48, 64, 683
TatI	WGTACW	3 cut(s)	144, 183, 586
TfiI	GAWTC	2 cut(s)	14, 455
Tru1I	TTAA	2 cut(s)	231, 602
Tru9I	TTAA	2 cut(s)	231, 602
TscAI	CASTG	4 cut(s)	138, 303, 615, 811
TseI	GCWGC	3 cut(s)	5, 379, 709
TspDTI	ATGAA	3 cut(s)	366, 645, 807
TspGWI	ACGGA	1 cut(s)	746
TspRI	CASTG	4 cut(s)	138, 303, 615, 811
VpaK11BI	GGWCC	1 cut(s)	559
XapI	RAATTY	2 cut(s)	64, 683
XceI	RCATGY	1 cut(s)	280
XspI	CTAG	2 cut(s)	39, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.