Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006514

Physical Location & Seq

Genomic Coordinates Reverse (-)

15023212 .. 15023511

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0161400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCGAATGGGCGGCGTGCCCAGAATCTTCCCCGGCGGCGTATCCAAGTGGCAGGGGGAAGCGCATGCAGGCCAAGAAAGCCATGCAGCTCTTCAAGGCCCGCCTCTGCCTTTGGCTCTACGACACCTCCTAGTCCTCCGATCCCGACCTCCAGCTCCTCGTCCTCCGCTTCCTCCCCCTCGTTGCCGGCCTCTACCTCTCCCGCGTCCCCCCTCCGCATCCCCCTCGCCGGCTGATATAACGGCCAAGTTGAGCCCGGTGGCGTTGCTCTTGATGGCGGCGGCCTTGGTTTCGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin Microtub_bd

Protein Analysis

99

Amino Acids

10.45

Weight (kDa)

11.91

Isoelectric Point (pI)

82.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27180 AT4G27180 AT5G54670 AT5G54670 AT5G54670
fragaria_vesca	FvH4_3g21681 FvH4_3g21681 FvH4_3g21681 FvH4_3g21681 FvH4_3g21681
malus_domestica	MD03G1212900.v1.1 MD11G1228000.v1.1
prunus_persica	Prupe.4G201200_v2.0.a1 Prupe.4G201200_v2.0.a1
pyrus_communis	pycom03g16170 pycom11g20070
rosa_chinensis	RchiOBHm_Chr5g0037181
rosa_laevigata	RLG00000033756
rosa_multiflora	Rmu_sc0030361.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043800
rosa_rugosa	Rorug05G0161400
rosa_samantha	Rh5AG253000 Rh5BG254900 Rh5CG287600 Rh5DG263400
rosa_wichuraiana	Rw5G023370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	205
AciI	CCGC	8 cut(s)	12, 36, 101, 167, 203, 216, 278, 281
AclWI	GGATC	1 cut(s)	135
AcoI	YGGCCR	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	95
AluBI	AGCT	2 cut(s)	89, 155
AluI	AGCT	2 cut(s)	89, 155
AlwI	GGATC	1 cut(s)	135
AoxI	GGCC	5 cut(s)	70, 97, 188, 243, 282
ApeKI	GCWGC	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	2 cut(s)	33, 257
BaeGI	GKGCMC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	1 cut(s)	268
BceAI	ACGGC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	207, 241
BciVI	GTATCC	1 cut(s)	52
BcnI	CCSGG	2 cut(s)	33, 257
BfaI	CTAG	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	5 cut(s)	13, 37, 87, 279, 282
BlsI	GCNGC	5 cut(s)	14, 38, 88, 280, 283
Bme1390I	CCNGG	2 cut(s)	33, 257
BmgT120I	GGNCC	1 cut(s)	98
BmrFI	CCNGG	2 cut(s)	33, 257
BmsI	GCATC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	135
BpuMI	CCSGG	2 cut(s)	33, 257
BsaJI	CCNNGG	2 cut(s)	31, 285
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	2 cut(s)	186, 229
BseDI	CCNNGG	2 cut(s)	31, 285
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	147
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	5 cut(s)	72, 99, 190, 245, 284
BsiSI	CCGG	4 cut(s)	33, 187, 230, 257
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	5 cut(s)	72, 99, 190, 245, 284
Bsp1286I	GDGCHC	2 cut(s)	21, 257
Bsp143I	GATC	1 cut(s)	140
BspACI	CCGC	8 cut(s)	12, 36, 101, 167, 203, 216, 278, 281
BspANI	GGCC	5 cut(s)	72, 99, 190, 245, 284
BspFNI	CGCG	1 cut(s)	205
BspPI	GGATC	1 cut(s)	135
BspQI	GCTCTTC	1 cut(s)	96
BsrFI	RCCGGY	2 cut(s)	186, 229
BssAI	RCCGGY	2 cut(s)	186, 229
BssECI	CCNNGG	2 cut(s)	31, 285
BssMI	GATC	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	285
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	6 cut(s)	17, 66, 70, 101, 188, 231
BstF5I	GGATG	1 cut(s)	218
BstFNI	CGCG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	2 cut(s)	31, 255
BstSLI	GKGCMC	1 cut(s)	21
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	5 cut(s)	72, 99, 190, 245, 284
BtsCI	GGATG	1 cut(s)	218
Cac8I	GCNNGC	6 cut(s)	17, 66, 70, 101, 188, 231
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	2 cut(s)	186, 229
Cfr13I	GGNCC	1 cut(s)	98
CseI	GACGC	1 cut(s)	194
CviAII	CATG	2 cut(s)	65, 83
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	2 cut(s)	68, 86
FaiI	YATR	3 cut(s)	66, 84, 239
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	2 cut(s)	64, 82
FauI	CCCGC	2 cut(s)	108, 210
Fnu4HI	GCNGC	5 cut(s)	13, 37, 87, 279, 282
FokI	GGATG	1 cut(s)	205
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	5 cut(s)	13, 37, 87, 279, 282
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	5 cut(s)	13, 37, 87, 279, 282
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	5 cut(s)	72, 99, 190, 245, 284
HapII	CCGG	4 cut(s)	33, 187, 230, 257
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	2 cut(s)	68, 86
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	1 cut(s)	24
HpaII	CCGG	4 cut(s)	33, 187, 230, 257
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	2 cut(s)	144, 271
HpyCH4V	TGCA	2 cut(s)	68, 86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	68, 86
HspAI	GCGC	1 cut(s)	62
KroI	GCCGGC	2 cut(s)	186, 229
KroNI	GCCGGC	2 cut(s)	188, 231
Kzo9I	GATC	1 cut(s)	140
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	8 cut(s)	34, 38, 46, 54, 165, 200, 243, 270
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	131
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	2 cut(s)	19, 83
MhlI	GDGCHC	2 cut(s)	21, 257
MroNI	GCCGGC	2 cut(s)	186, 229
MspI	CCGG	4 cut(s)	33, 187, 230, 257
MspR9I	CCNGG	2 cut(s)	33, 257
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	78
NaeI	GCCGGC	2 cut(s)	188, 231
NciI	CCSGG	2 cut(s)	33, 257
NdeII	GATC	1 cut(s)	140
NgoMIV	GCCGGC	2 cut(s)	186, 229
NlaIII	CATG	2 cut(s)	68, 86
NspI	RCATGY	1 cut(s)	68
PaeI	GCATGC	1 cut(s)	68
PciSI	GCTCTTC	1 cut(s)	96
PdiI	GCCGGC	2 cut(s)	188, 231
PfeI	GAWTC	1 cut(s)	24
PkrI	GCNGC	5 cut(s)	14, 38, 88, 280, 283
PspPI	GGNCC	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	96
SatI	GCNGC	5 cut(s)	13, 37, 87, 279, 282
Sau3AI	GATC	1 cut(s)	140
Sau96I	GGNCC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	33, 257
SduI	GDGCHC	2 cut(s)	21, 257
SetI	ASST	5 cut(s)	91, 129, 151, 157, 199
SfaNI	GCATC	1 cut(s)	227
SphI	GCATGC	1 cut(s)	68
SsiI	CCGC	8 cut(s)	12, 36, 101, 167, 203, 216, 278, 281
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	31, 255
StyI	CCWWGG	1 cut(s)	285
TauI	GCSGC	4 cut(s)	15, 39, 281, 284
TfiI	GAWTC	1 cut(s)	24
TseI	GCWGC	1 cut(s)	86
XceI	RCATGY	1 cut(s)	68
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.