pycom03g16400

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012173
Physical Location & Seq
Reverse (-)
17560891 .. 17562771
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 669 bp
ATGGAAGGGAAGAGAACCCTTCTTGTTTTCCAACTTTCCAACTCTCCCAAATACATTTCATCGCCCCTTAAAACCCTCCAAATCCTCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAACATTTTCCATCCAACCACCATCATGTCCCTGTTAAACACCCACTTCTTCTCCTCCTTCCTCGGAGTCTTTCCATGGACCTTTCTCCTCCTTCTCTCTCTACCCCTCTCTCTCTCCTCCACCAACATCCACGACCTCCTTATCTCCCAGGGTCTACCACCTGGCCTCCTCCCAAAGGAGGTCAAGTCCTACACTCTCTCAGACAATGGGGAGCTCCAGGTCTTCCTTGATGCCCCATGCCTCACAAAATATGAGAACAGGGTTTTCTTTGAGAGCGTGGTGAGGGCAAATCTCAGCTATGGCAGCCTCATTGGGGTTCAGGGTTTGTCTCAGGAGGAGCTCTTTCTGTGGCTGCCGGTCAAAGACATCATTGTTGATGATCCAAGATCAGGTCTCATCCTCTTTGACATTGGGGTTGCTCACAAACAGTTTTCCCTCTCACTCTTTGAGGATCCCCCTGACTGTAAACCCTCAGGTGTGTTGAAGAATCATGTGAGGAAGGAGAAAGGCTTTTGGGGTCTGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

223

Amino Acids

24.73

Weight (kDa)

6.96

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 91 - 197 1e-27 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54530
fragaria_vesca FvH4_3g21500
malus_domestica MD01G1090100.v1.1 MD03G1215600.v1.1 MD11G1230200.v1.1
prunus_persica Prupe.4G197200_v2.0.a1
pyrus_communis pycom03g16400 pycom11g20400
rosa_chinensis RchiOBHm_Chr5g0036931
rosa_laevigata RLG00000033735
rosa_multiflora Rmu_sc0007663.1_g000018
rosa_roxburghii Rroxscaffold_1G00044020
rosa_rugosa Rorug05G0159000 Rorug05G0159100
rosa_samantha Rh5AG251300 Rh5BG252800 Rh5CG285400 Rh5DG261400
rosa_wichuraiana Rw5G023120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 295
AclWI GGATC 3 cut(s) 515, 587, 600
AfiI CCNNNNNNNGG 4 cut(s) 316, 319, 454, 530
AgsI TTSAA 1 cut(s) 625
AjnI CCWGG 3 cut(s) 288, 301, 357
AluBI AGCT 3 cut(s) 355, 438, 481
AluI AGCT 3 cut(s) 355, 438, 481
Alw21I GWGCWC 2 cut(s) 357, 483
Alw26I GTCTC 2 cut(s) 474, 539
AlwI GGATC 3 cut(s) 515, 587, 600
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 2 cut(s) 444, 493
Asp700I GAANNNNTTC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 433
AvaII GGWCC 1 cut(s) 219
AxyI CCTNAGG 1 cut(s) 613
BamHI GGATCC 1 cut(s) 592
BanII GRGCYC 2 cut(s) 357, 483
BbsI GAAGAC 1 cut(s) 355
Bbv12I GWGCWC 2 cut(s) 357, 483
BbvI GCAGC 2 cut(s) 456, 480
BccI CCATC 2 cut(s) 159, 170
BciT130I CCWGG 3 cut(s) 290, 303, 359
BcoDI GTCTC 2 cut(s) 474, 539
BisI GCNGC 2 cut(s) 445, 494
BlsI GCNGC 2 cut(s) 446, 495
Bme1390I CCNGG 3 cut(s) 290, 303, 359
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 594
BmrFI CCNGG 3 cut(s) 290, 303, 359
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 355
BpmI CTGGAG 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 4 cut(s) 202, 215, 288, 289
BsaXI ACNNNNNCTCC 6 cut(s) 176, 206, 291, 311, 321, 341
Bsc4I CCNNNNNNNGG 4 cut(s) 316, 319, 454, 530
Bse118I RCCGGY 1 cut(s) 496
Bse21I CCTNAGG 1 cut(s) 613
BseBI CCWGG 3 cut(s) 290, 303, 359
BseDI CCNNGG 4 cut(s) 202, 215, 288, 289
BseGI GGATG 3 cut(s) 151, 267, 537
BseLI CCNNNNNNNGG 4 cut(s) 316, 319, 454, 530
BseMII CTCAG 5 cut(s) 354, 448, 485, 627, 653
BseRI GAGGAG 5 cut(s) 184, 218, 247, 299, 491
BseXI GCAGC 2 cut(s) 456, 480
BshFI GGCC 1 cut(s) 306
BsiHKAI GWGCWC 2 cut(s) 357, 483
BsiSI CCGG 1 cut(s) 497
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 4 cut(s) 316, 319, 454, 530
BsmAI GTCTC 2 cut(s) 474, 539
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 1 cut(s) 306
Bso31I GGTCTC 1 cut(s) 539
Bsp1286I GDGCHC 2 cut(s) 357, 483
Bsp143I GATC 3 cut(s) 520, 527, 592
Bsp19I CCATGG 1 cut(s) 215
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 5 cut(s) 353, 447, 484, 626, 654
BspLI GGNNCC 1 cut(s) 594
BspPI GGATC 3 cut(s) 515, 587, 600
BspTNI GGTCTC 1 cut(s) 539
BsrFI RCCGGY 1 cut(s) 496
BssAI RCCGGY 1 cut(s) 496
BssECI CCNNGG 4 cut(s) 202, 215, 288, 289
BssMI GATC 3 cut(s) 520, 527, 592
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 3 cut(s) 290, 303, 359
Bst4CI ACNGT 2 cut(s) 570, 605
Bst6I CTCTTC 1 cut(s) 5
BstDEI CTNAG 5 cut(s) 340, 434, 471, 613, 662
BstDSI CCRYGG 1 cut(s) 215
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 3 cut(s) 151, 267, 537
BstKTI GATC 3 cut(s) 523, 530, 595
BstMAI GTCTC 2 cut(s) 474, 539
BstMBI GATC 3 cut(s) 520, 527, 592
BstMWI GCNNNNNNNGC 1 cut(s) 444
BstNI CCWGG 3 cut(s) 290, 303, 359
BstSCI CCNGG 3 cut(s) 288, 301, 357
BstV1I GCAGC 2 cut(s) 456, 480
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
Bsu36I CCTNAGG 1 cut(s) 613
BsuRI GGCC 1 cut(s) 306
BtgI CCRYGG 1 cut(s) 215
BtgZI GCGATG 1 cut(s) 45
BtsCI GGATG 3 cut(s) 151, 267, 537
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 1 cut(s) 219
CviAII CATG 4 cut(s) 166, 216, 378, 632
CviJI RGCY 7 cut(s) 306, 355, 438, 447, 481, 493, 651
CviKI_1 RGCY 7 cut(s) 306, 355, 438, 447, 481, 493, 651
DdeI CTNAG 5 cut(s) 340, 434, 471, 613, 662
DpnI GATC 3 cut(s) 522, 529, 594
DpnII GATC 3 cut(s) 520, 527, 592
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Ecl136II GAGCTC 2 cut(s) 355, 481
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 2 cut(s) 357, 483
Eco31I GGTCTC 1 cut(s) 539
Eco47I GGWCC 1 cut(s) 219
Eco53kI GAGCTC 2 cut(s) 355, 481
Eco81I CCTNAGG 1 cut(s) 613
EcoICRI GAGCTC 2 cut(s) 355, 481
EcoNI CCTNNNNNAGG 1 cut(s) 314
EcoRII CCWGG 3 cut(s) 288, 301, 357
EcoT14I CCWWGG 1 cut(s) 215
EcoT38I GRGCYC 2 cut(s) 357, 483
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 4 cut(s) 169, 219, 381, 635
FaiI YATR 6 cut(s) 167, 217, 379, 393, 441, 633
FaqI GGGAC 1 cut(s) 154
FatI CATG 4 cut(s) 165, 215, 377, 631
FblI GTMKAC 1 cut(s) 295
Fnu4HI GCNGC 2 cut(s) 445, 494
FokI GGATG 3 cut(s) 138, 254, 524
FriOI GRGCYC 2 cut(s) 357, 483
Fsp4HI GCNGC 2 cut(s) 445, 494
GluI GCNGC 2 cut(s) 445, 494
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 1 cut(s) 306
HapII CCGG 1 cut(s) 497
Hin1II CATG 4 cut(s) 169, 219, 381, 635
HinfI GANTC 2 cut(s) 207, 628
HpaII CCGG 1 cut(s) 497
HphI GGTGA 1 cut(s) 433
Hpy166II GTNNAC 2 cut(s) 296, 608
Hpy188I TCNGA 4 cut(s) 141, 206, 343, 663
Hpy188III TCNNGA 1 cut(s) 473
Hpy8I GTNNAC 2 cut(s) 296, 608
HpyAV CCTTC 4 cut(s) 29, 208, 242, 634
HpyCH4III ACNGT 2 cut(s) 570, 605
HpyF10VI GCNNNNNNNGC 1 cut(s) 444
HpyF3I CTNAG 5 cut(s) 340, 434, 471, 613, 662
Hsp92II CATG 4 cut(s) 169, 219, 381, 635
Kzo9I GATC 3 cut(s) 520, 527, 592
LmnI GCTCC 3 cut(s) 352, 360, 478
Lsp1109I GCAGC 2 cut(s) 456, 480
LweI GCATC 1 cut(s) 361
MalI GATC 3 cut(s) 522, 529, 594
MboI GATC 3 cut(s) 520, 527, 592
MboII GAAGA 4 cut(s) 22, 181, 355, 637
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 2 cut(s) 357, 483
MlyI GAGTC 1 cut(s) 216
MmeI TCCRAC 3 cut(s) 55, 63, 179
MroXI GAANNNNTTC 1 cut(s) 146
MseI TTAA 2 cut(s) 69, 176
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 1 cut(s) 497
MspR9I CCNGG 3 cut(s) 290, 303, 359
MvaI CCWGG 3 cut(s) 290, 303, 359
MwoI GCNNNNNNNGC 1 cut(s) 444
NcoI CCATGG 1 cut(s) 215
NdeII GATC 3 cut(s) 520, 527, 592
NlaIII CATG 4 cut(s) 169, 219, 381, 635
NlaIV GGNNCC 1 cut(s) 594
PasI CCCWGGG 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 628
PkrI GCNGC 2 cut(s) 446, 495
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
Psp124BI GAGCTC 2 cut(s) 357, 483
Psp6I CCWGG 3 cut(s) 288, 301, 357
PspGI CCWGG 3 cut(s) 288, 301, 357
PspN4I GGNNCC 1 cut(s) 594
PspPI GGNCC 1 cut(s) 219
PsuI RGATCY 1 cut(s) 592
RseI CAYNNNNRTG 1 cut(s) 164
SacI GAGCTC 2 cut(s) 357, 483
SaqAI TTAA 2 cut(s) 69, 176
SatI GCNGC 2 cut(s) 445, 494
Sau3AI GATC 3 cut(s) 520, 527, 592
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 1 cut(s) 216
ScrFI CCNGG 3 cut(s) 290, 303, 359
SduI GDGCHC 2 cut(s) 357, 483
SfaNI GCATC 1 cut(s) 361
SinI GGWCC 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 164
SstI GAGCTC 2 cut(s) 357, 483
StyD4I CCNGG 3 cut(s) 288, 301, 357
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 2 cut(s) 570, 605
TfiI GAWTC 1 cut(s) 628
Tru1I TTAA 2 cut(s) 69, 176
Tru9I TTAA 2 cut(s) 69, 176
TseI GCWGC 2 cut(s) 444, 493
TspDTI ATGAA 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 219
XagI CCTNNNNNAGG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.