Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0020307

Physical Location & Seq

Genomic Coordinates Reverse (-)

21431049 .. 21431800

Gene Structure 752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTGGAGTCGATGGAGGACGGAGAGATTACGATTTCGGCGTACGACACCGCTTGGGTGGCGTTAGTGGAGGATATGGAAGGCAGTGGCTTGCCTCAGTTCCCATCCAGCCTCCAGTGGATTGCCAACAACCAACTGCCAGATGGTTCTTGGGGAGATAGTGTGATCTTCACTGCTCATGATCGCATCCTCAACACAATAGCTTGCGTTGTCGCACTCAAATCATGGAGCCTTCATCCCGACAAGTGCGAAAAAGGAATGACATATTTCAAGGAGAACATAAGCAAGCTTGGCAACGAGAATGCCGAACACATGCCAATCGGGTTCGAAGTTGCTTTTCCCTCGATTCTCGAATTGGCTAGGAGTTTAAACCTGGACGTGCCTGATGATTGTCCTGTGTTGCATGAGATTTACGCCATGAGAGATCTAAAGCTCACAAGGTATATGTATACACGTCTCATACTTTTTTGGAATTTTAATGTTTGTTTTTCTGTGAGAGTTAAAAAGCAACCTTATCCACGGTGGATATATTATAATTTGGTCTGTTGGGGGTGTGCGAACTCTTTTACATGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009905 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016853 GO:0016872 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

193

Amino Acids

22.01

Weight (kDa)

4.93

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020307)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14114
malus_domestica	MD03G1263600.v1.1 MD11G1208500.v1.1
pyrus_communis	pycom03g21120
rosa_roxburghii	Rroxscaffold_7G00176550
rosa_samantha	Rh6DG327000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
AccI	GTMKAC	1 cut(s)	449
AciI	CCGC	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	472
AfaI	GTAC	2 cut(s)	44, 574
AflIII	ACRYGT	2 cut(s)	452, 569
AgsI	TTSAA	1 cut(s)	271
AjiI	CACGTC	2 cut(s)	379, 455
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	3 cut(s)	203, 289, 433
AluI	AGCT	3 cut(s)	203, 289, 433
Alw26I	GTCTC	1 cut(s)	461
ApoI	RAATTY	1 cut(s)	472
AsuII	TTCGAA	1 cut(s)	327
BccI	CCATC	3 cut(s)	7, 112, 137
BciT130I	CCWGG	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	1 cut(s)	360
BglII	AGATCT	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	374
BmgBI	CACGTC	2 cut(s)	379, 455
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	98
Bpu14I	TTCGAA	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	518
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bse1I	ACTGG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	518
BseGI	GGATG	3 cut(s)	104, 186, 235
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	115
BsiWI	CGTACG	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	461
BsmBI	CGTCTC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	307
Bsp119I	TTCGAA	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	165, 181, 424
BspACI	CCGC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	230
BspT104I	TTCGAA	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	518
BssMI	GATC	3 cut(s)	165, 181, 424
BssNAI	GTATAC	1 cut(s)	450
Bst1107I	GTATAC	1 cut(s)	450
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	522
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	3 cut(s)	92, 205, 287
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	518
BstF5I	GGATG	3 cut(s)	104, 186, 235
BstKTI	GATC	3 cut(s)	168, 184, 427
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	3 cut(s)	165, 181, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 291
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	2 cut(s)	316, 573
BstSCI	CCNGG	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BstZ17I	GTATAC	1 cut(s)	450
BtgI	CCRYGG	1 cut(s)	518
BtrI	CACGTC	2 cut(s)	379, 455
BtsCI	GGATG	3 cut(s)	104, 186, 235
BtsI	GCAGTG	2 cut(s)	91, 171
BtsIMutI	CAGTG	3 cut(s)	91, 122, 171
Cac8I	GCNNGC	3 cut(s)	92, 205, 287
CciI	TCATGA	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	43, 573
CviAII	CATG	6 cut(s)	179, 225, 313, 404, 418, 570
CviJI	RGCY	7 cut(s)	90, 111, 203, 231, 289, 359, 433
CviKI_1	RGCY	7 cut(s)	90, 111, 203, 231, 289, 359, 433
CviQI	GTAC	2 cut(s)	43, 573
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	3 cut(s)	167, 183, 426
DpnII	GATC	3 cut(s)	165, 181, 424
DraI	TTTAAA	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	372
Esp3I	CGTCTC	1 cut(s)	461
FaeI	CATG	6 cut(s)	182, 228, 316, 407, 421, 573
FatI	CATG	6 cut(s)	178, 224, 312, 403, 417, 569
FblI	GTMKAC	1 cut(s)	449
FokI	GGATG	3 cut(s)	91, 173, 222
FspBI	CTAG	1 cut(s)	360
GsuI	CTGGAG	1 cut(s)	98
Hin1II	CATG	6 cut(s)	182, 228, 316, 407, 421, 573
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	2 cut(s)	8, 346
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188III	TCNNGA	3 cut(s)	179, 239, 350
Hpy8I	GTNNAC	1 cut(s)	450
HpyAV	CCTTC	2 cut(s)	74, 242
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4IV	ACGT	2 cut(s)	378, 454
HpyCH4V	TGCA	1 cut(s)	403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 291
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	2 cut(s)	378, 454
Hsp92II	CATG	6 cut(s)	182, 228, 316, 407, 421, 573
Kzo9I	GATC	3 cut(s)	165, 181, 424
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	7 cut(s)	121, 128, 153, 359, 386, 396, 408
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	2 cut(s)	378, 454
MalI	GATC	3 cut(s)	167, 183, 426
MboI	GATC	3 cut(s)	165, 181, 424
MboII	GAAGA	1 cut(s)	160
MflI	RGATCY	1 cut(s)	424
MluCI	AATT	3 cut(s)	353, 472, 535
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	6 cut(s)	10, 64, 105, 122, 200, 352
MseI	TTAA	4 cut(s)	368, 477, 501, 577
MspR9I	CCNGG	1 cut(s)	374
MssI	GTTTAAAC	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	59, 291
NdeII	GATC	3 cut(s)	165, 181, 424
NlaIII	CATG	6 cut(s)	182, 228, 316, 407, 421, 573
NlaIV	GGNNCC	1 cut(s)	230
NspI	RCATGY	2 cut(s)	316, 573
NspV	TTCGAA	1 cut(s)	327
PagI	TCATGA	1 cut(s)	178
PciI	ACATGT	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 303
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	346
Pfl23II	CGTACG	1 cut(s)	42
PleI	GAGTC	1 cut(s)	16
PmeI	GTTTAAAC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	16
PscI	ACATGT	1 cut(s)	569
PsiI	TTATAA	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspLI	CGTACG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	2 cut(s)	44, 574
RsaNI	GTAC	2 cut(s)	43, 573
SaqAI	TTAA	4 cut(s)	368, 477, 501, 577
Sau3AI	GATC	3 cut(s)	165, 181, 424
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	374
SetI	ASST	8 cut(s)	205, 291, 375, 381, 435, 443, 457, 514
SfaNI	GCATC	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	327
Sse9I	AATT	3 cut(s)	353, 472, 535
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	522
TaiI	ACGT	2 cut(s)	381, 457
TaqI	TCGA	4 cut(s)	11, 327, 344, 351
TasI	AATT	3 cut(s)	353, 472, 535
TatI	WGTACW	1 cut(s)	572
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	4 cut(s)	368, 477, 501, 577
Tru9I	TTAA	4 cut(s)	368, 477, 501, 577
TscAI	CASTG	3 cut(s)	91, 122, 178
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	3 cut(s)	91, 122, 178
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	2 cut(s)	316, 573
XcmI	CCANNNNNNNNNTGG	2 cut(s)	140, 147
XmiI	GTMKAC	1 cut(s)	449
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.