Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0013127

Physical Location & Seq

Genomic Coordinates Reverse (-)

22364685 .. 22364966

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGCGTTGAGCATGACGCACCAGATCAGCGCGCTCTCCGAGACTCCGATTAGGACAATTGAAGCTAGCTCATCATCCGTAGAATCGGTCAGTGTGCCGCCAATGTGGAAGTCTCCGGCGGCGGGTTTGATTTGCAAAATTCAGAAGCCGGAAGTGTTTGACGGGCTGTCGCCGCCGTTGAGTCCGTGTAGATCGCTAGTTCTCGAGTCTAGCTGGCCGGATCTGTCCATGGGGGGCAAGGCGTTCGCGACGAAGGTAGAATCGTCGGTGCTGGAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

94

Amino Acids

9.88

Weight (kDa)

5.55

Isoelectric Point (pI)

59.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23920
fragaria_vesca	FvH4_4g05230
malus_domestica	MD12G1073900.v1.1 MD13G1226400.v1.1 MD16G1231500.v1.1
prunus_persica	Prupe.1G053800_v2.0.a1
pyrus_communis	pycom03g22190 pycom13g19950 pycom16g19370
rosa_chinensis	RchiOBHm_Chr4g0396151
rosa_laevigata	RLG00000009565
rosa_multiflora	Rmu_sc0006325.1_g000039
rosa_roxburghii	Rroxscaffold_5G00341000
rosa_rugosa	Rorug03G0351400
rosa_samantha	Rh4BG065100 Rh4CG071900 Rh4DG061900
rosa_wichuraiana	Rw4G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	32, 248
AciI	CCGC	4 cut(s)	98, 119, 122, 173
AclWI	GGATC	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	62
AhdI	GACNNNNNGTC	1 cut(s)	166
AluBI	AGCT	3 cut(s)	65, 69, 213
AluI	AGCT	3 cut(s)	65, 69, 213
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	2 cut(s)	35, 117
AlwI	GGATC	1 cut(s)	228
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	138
AspLEI	GCGC	2 cut(s)	32, 34
AsuNHI	GCTAGC	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	279
BceAI	ACGGC	1 cut(s)	160
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BcoDI	GTCTC	2 cut(s)	35, 117
BfaI	CTAG	4 cut(s)	66, 197, 210, 280
BisI	GCNGC	3 cut(s)	98, 120, 173
BlsI	GCNGC	3 cut(s)	99, 121, 174
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	203
BmtI	GCTAGC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	122
BsePI	GCGCGC	1 cut(s)	30
Bsh1236I	CGCG	2 cut(s)	32, 248
BshFI	GGCC	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	3 cut(s)	116, 149, 218
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	2 cut(s)	35, 117
BsnI	GGCC	1 cut(s)	217
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	24, 191, 220
Bsp19I	CCATGG	1 cut(s)	228
Bsp68I	TCGCGA	1 cut(s)	248
BspACI	CCGC	4 cut(s)	98, 119, 122, 173
BspANI	GGCC	1 cut(s)	217
BspFNI	CGCG	2 cut(s)	32, 248
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	228
BssHII	GCGCGC	1 cut(s)	30
BssMI	GATC	3 cut(s)	24, 191, 220
BssT1I	CCWWGG	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	32, 67, 215
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	74
BstFNI	CGCG	2 cut(s)	32, 248
BstHHI	GCGC	2 cut(s)	32, 34
BstKTI	GATC	3 cut(s)	27, 194, 223
BstMAI	GTCTC	2 cut(s)	35, 117
BstMBI	GATC	3 cut(s)	24, 191, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstUI	CGCG	2 cut(s)	32, 248
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	217
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	97
BtuMI	TCGCGA	1 cut(s)	248
Cac8I	GCNNGC	3 cut(s)	32, 67, 215
CfoI	GCGC	2 cut(s)	32, 34
CseI	GACGC	1 cut(s)	25
CviAII	CATG	2 cut(s)	13, 229
CviJI	RGCY	6 cut(s)	65, 69, 148, 166, 213, 217
CviKI_1	RGCY	6 cut(s)	65, 69, 148, 166, 213, 217
DpnI	GATC	3 cut(s)	26, 193, 222
DpnII	GATC	3 cut(s)	24, 191, 220
DriI	GACNNNNNGTC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	215
Eam1105I	GACNNNNNGTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	16, 232
FaiI	YATR	2 cut(s)	14, 230
FatI	CATG	2 cut(s)	12, 228
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	3 cut(s)	98, 120, 173
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	3 cut(s)	98, 120, 173
FspBI	CTAG	4 cut(s)	66, 197, 210, 280
GlaI	GCGC	2 cut(s)	31, 33
GluI	GCNGC	3 cut(s)	98, 120, 173
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	3 cut(s)	116, 149, 218
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	2 cut(s)	32, 34
Hin1II	CATG	2 cut(s)	16, 232
Hin6I	GCGC	2 cut(s)	30, 32
HinP1I	GCGC	2 cut(s)	30, 32
HinfI	GANTC	5 cut(s)	43, 83, 181, 206, 260
HpaII	CCGG	3 cut(s)	116, 149, 218
Hpy188I	TCNGA	3 cut(s)	40, 48, 144
Hpy188III	TCNNGA	2 cut(s)	203, 247
Hpy99I	CGWCG	2 cut(s)	253, 268
HpyAV	CCTTC	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
Hsp92II	CATG	2 cut(s)	16, 232
HspAI	GCGC	2 cut(s)	30, 32
Kzo9I	GATC	3 cut(s)	24, 191, 220
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	6 cut(s)	35, 129, 162, 199, 231, 257
MaeI	CTAG	4 cut(s)	66, 197, 210, 280
MalI	GATC	3 cut(s)	26, 193, 222
MboI	GATC	3 cut(s)	24, 191, 220
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	2 cut(s)	57, 138
MlyI	GAGTC	3 cut(s)	37, 190, 215
MspI	CCGG	3 cut(s)	116, 149, 218
MunI	CAATTG	1 cut(s)	57
MvnI	CGCG	2 cut(s)	32, 248
MwoI	GCNNNNNNNGC	1 cut(s)	172
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	3 cut(s)	24, 191, 220
NheI	GCTAGC	1 cut(s)	65
NlaIII	CATG	2 cut(s)	16, 232
NruI	TCGCGA	1 cut(s)	248
PaeR7I	CTCGAG	1 cut(s)	203
PauI	GCGCGC	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	83, 260
PkrI	GCNGC	3 cut(s)	99, 121, 174
PleI	GAGTC	3 cut(s)	37, 189, 214
PpsI	GAGTC	3 cut(s)	37, 189, 214
PsuI	RGATCY	1 cut(s)	220
PteI	GCGCGC	1 cut(s)	30
RruI	TCGCGA	1 cut(s)	248
SatI	GCNGC	3 cut(s)	98, 120, 173
Sau3AI	GATC	3 cut(s)	24, 191, 220
SchI	GAGTC	3 cut(s)	37, 190, 215
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	4 cut(s)	67, 71, 215, 258
Sfr274I	CTCGAG	1 cut(s)	203
SlaI	CTCGAG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	2 cut(s)	57, 138
SsiI	CCGC	4 cut(s)	98, 119, 122, 173
SspMI	CTAG	4 cut(s)	66, 197, 210, 280
StyI	CCWWGG	1 cut(s)	228
TaqI	TCGA	1 cut(s)	204
TaqII	GACCGA	1 cut(s)	76
TasI	AATT	2 cut(s)	57, 138
TauI	GCSGC	3 cut(s)	100, 122, 175
TfiI	GAWTC	2 cut(s)	83, 260
TscAI	CASTG	1 cut(s)	97
TspGWI	ACGGA	2 cut(s)	67, 174
TspRI	CASTG	1 cut(s)	97
XapI	RAATTY	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	203
XspI	CTAG	4 cut(s)	66, 197, 210, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.