Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0013127

Physical Location & Seq

Genomic Coordinates Reverse (-)

42977574 .. 42980357

Gene Structure 2784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0351400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2784 bp

ATGATGAGTGACAAAGGGAGAAGGAAGAAAAGAGGTGGTGCCTCAAGAATTGGTGAGATGATGCGCGATGGCACCGCTACTCCGATTGCCTCCCTCAATACAGATTATGTATCAGACAGTTCCAATGACATGATGAAACCCTCTATCAAGAATCCGGGTGCATATCAAGATGCAGCATTATCACCTTACAAGCATGATCGACGTGAAGGATTGCGACCTCGTCGCTCAAACACAATTTCAACTCAAGATATAATTTTTGGGTATGACAATGATGATCCTGGTAGTTCGGTTGACCAGGATATTGAATACAATGATGGGGATGATGGTCAGAAAGATGATGGAGATATTGGTGAGGGCCAAGATGGAAGAAGACGTTATCATTTTCGAAATCGAAATCGAAATCGTGCACAAGTCCAAGTCGGCAGGTTCTCTATCGATCAAGGAATGGGGCCAAAGGTCGGTAAGGATGTAAGAGAGTGTGGATCCTCAGTTCATAAGCGTCATCGAATTACAAGGACTGATGATTCGGAGCCCGACCAAGCTCAAACTGCTGGGGCTGGGCCAAGCTCAGAGGGAGGGGTAGACATACAACCTCTGCAGCTGGTTGATCATAGTGTCAGTTTTGAGGATATAGGGGGGCTTTCTCAATATATTGATGCTCTGAAGGAAATGGTTTTCTTTCCTTTACTCTATCCAGATTTCTTTACTAGTTATCATATCACCCCACCAAGGGGTGTTTTGTTATGTGGTCCTCCTGGTACTGGGAAGACATTAATTGCCAGAGCCTTAGCCTCTGCTGCATCCAAGGCTGGCCGCAAAGTTAGTTTTTACATGAGGAAGGGTGCAGATGTGCTAAGCAAGTGGGTTGGCGAGGCTGAAAGACAATTGAAACTTCTTTTTGAGGAAGCACAGAGAAATCAACCTTCAATCATATTCTTTGACGAAATAGATGGCCTGGCTCCTGTAAGATCCAGCAGACAAGAGCAAACTCATAATTCTATTGTGTCTACATTGCTTGCTCTCATGGATGGTCTTGATTCCCGTGGACAAGTGGTTTTGCTCGGAGCAACCAACCGAGTTGATGCAATTGATGGAGCTTTGCGGCGCCCTGGTAGATTTGATCGTGAATTCAACTTTCCTTTGCCTGGCTGTGAGGCCCGTGCTGAAATTTTAGACATTCACAGTCGGAAATGGAAGCATCCTCCTTCGAATGAGTTAAAATTGGAGCTTGCAGCTAGCTGTGTTGGATATTGTGGTGCTGATTTAAAGGCTCTTTGCACTGAAGCTGCCATTCGTGCTTTCCGTGAAAAATATCCTCAGGTCTACACAAGTGATGATAAATTTGTAATTGATGTTGATTCAGTAAGGGTTGAAAAGTATCACTTTGTTGAAGCCATGTCAACAATCACCCCAGCTGCTCACAGAGGTGCTGCTGTGCACTCTAGGCCATTGTCTTTAGTAGTTGCACCATGCCTGCAGAGGCATCTACAAAAAGTCATGAACTATATATCCGACATTTTCCCTCCGATTGCAGTGTCATCAGAATTGACCAAGCTTTCCGTGCTGTCCGCTTGTGGCTCTGCCATTCCTCCTGTTTATAGGCCTCGGCTTCTTCTATGTGGTGGTGAAGGTTCTGGCCTGGATCATCTCGGGCCTGCTATTTTGCATGAACTCAACCAGTTTCCTGTTCATTCTCTAGGACTTGCATCTCTTCTATGTGATCCTAGTGCAAAGACACCAGAGGAAGCGCTGGTACATATATTTGGTGAAGCAAGGAGAACGACGCCATCCATTCTCTACTTGCCACAGTTCAATCTGTGGTGGGACAGGGCACATGAGCAGCTCGGCGCGGTTTTTCTGACTTTGCTACAAGAAGTTCCATCTGATTTACCTATATTACTACTTGCAACGTCATCTGAAGTTGATGCCATCAGTACCTCTTCAATATTCTCCGAACGTTCTGTCTATCAAGTGGCCGGTACGCCATCTAATGAAGACAGATGTTTGTTTTTTGACCGTCTGATCGAAGCTGCCTTGTCAGTCTTGTTGGAGGGCAGGACTAAAAGGTCTCAGGCTGAACTTCCGAAGGCTCCAAAAGTGGCAAGCGGTCCAAAGGTGTCAGAGTTGAACGCCAAGGTAGAATCTGAGCAGCGTGCTCTTTGCCTATTGCAGATGTGCCTCAGAGATGTTTGCAATCGAATTCTATCCGATGAGAGGTTTAGTGCTTTTCACTATCCCATCTTGGATGAGGATGCTCCAAACTATCACTCAGTTATCCAAAATCCTATGGATGTTGCGACCCTGCTGCAGCGTGTTGACTCTGGGCTGTATGTTACATGTAAAGCATTCGTGCAAGATGTTGATCTTATAGTTTCCAATGCAAAGGCTTATAATGGAGATGATTACAATGGGGCTAGGATTGTTAGTAGAGCTTATGAGCTTGGATACGTGGTACATGGAATGCTGCAGTCACAGATGGGCCCTGCACTGATTGCATATTTTGACGAGATTGCTGCTCAAGGTGGCCTAGAAGATGTAACTGTTGTCACAAAGGCGAGTGCTCGACTTCGTGAGGGAAATCTGGATCCTAGCTACGAGGCACACAAGAGGCTTTTTGTGCAGCGGACCAAAACGTATGACATTCCACAGCTTGAGAGGCTTTACGCAAGAATTATGAAGGACATTTTCAACATCAAGGACGGAGACAAAAGCGATGTAGTGCCACCTATGCATTTAATTTTCAAGTATCTGTTGAAATTTGCAGAGGATGAAGCAAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

927

Amino Acids

102.69

Weight (kDa)

6.02

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IstB_IS21	PF01695	244 - 322	4.9e-07	IstB-like ATP binding protein
AAA	PF00004	246 - 381	1e-38	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	409 - 445	1.3e-10	AAA+ lid domain
Bromodomain	PF00439	730 - 801	2.2e-14	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23920
fragaria_vesca	FvH4_4g05230
malus_domestica	MD12G1073900.v1.1 MD13G1226400.v1.1 MD16G1231500.v1.1
prunus_persica	Prupe.1G053800_v2.0.a1
pyrus_communis	pycom03g22190 pycom13g19950 pycom16g19370
rosa_chinensis	RchiOBHm_Chr4g0396151
rosa_laevigata	RLG00000009565
rosa_multiflora	Rmu_sc0006325.1_g000039
rosa_roxburghii	Rroxscaffold_5G00341000
rosa_rugosa	Rorug03G0351400
rosa_samantha	Rh4BG065100 Rh4CG071900 Rh4DG061900
rosa_wichuraiana	Rw4G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2391
AasI	GACNNNNNNGTC	1 cut(s)	2065
Acc36I	ACCTGC	1 cut(s)	414
AccB1I	GGYRCC	3 cut(s)	38, 71, 1104
AccI	GTMKAC	3 cut(s)	582, 1007, 1323
AccII	CGCG	2 cut(s)	66, 1850
AciI	CCGC	7 cut(s)	75, 814, 1102, 1569, 1850, 2106, 2623
AclI	AACGTT	1 cut(s)	1957
AclWI	GGATC	8 cut(s)	269, 477, 490, 963, 1650, 1715, 2579, 2592
AcoI	YGGCCR	2 cut(s)	811, 1974
AcsI	RAATTY	5 cut(s)	1127, 1167, 1340, 2199, 2756
AcuI	CTGAAG	3 cut(s)	683, 1302, 1938
AcyI	GRCGYC	2 cut(s)	1105, 1784
AfaI	GTAC	5 cut(s)	760, 1755, 1936, 1981, 2454
AfeI	AGCGCT	1 cut(s)	1749
AfiI	CCNNNNNNNGG	7 cut(s)	458, 729, 730, 731, 761, 1145, 2214
AflIII	ACRYGT	1 cut(s)	2336
AhlI	ACTAGT	1 cut(s)	707
AjiI	CACGTC	1 cut(s)	203
AjnI	CCWGG	7 cut(s)	277, 294, 754, 954, 1108, 1144, 1638
AleI	CACNNNNGTG	1 cut(s)	1425
AloI	GAACNNNNNNTCC	4 cut(s)	474, 506, 1493, 1525
Alw21I	GWGCWC	4 cut(s)	409, 1440, 2158, 2563
Alw26I	GTCTC	2 cut(s)	2073, 2697
Alw44I	GTGCAC	2 cut(s)	405, 1436
AlwI	GGATC	8 cut(s)	269, 477, 490, 963, 1650, 1715, 2579, 2592
Ama87I	CYCGRG	1 cut(s)	1649
Aor51HI	AGCGCT	1 cut(s)	1749
ApaI	GGGCCC	1 cut(s)	2483
ApaLI	GTGCAC	2 cut(s)	405, 1436
ApoI	RAATTY	5 cut(s)	1127, 1167, 1340, 2199, 2756
ArsI	GACNNNNNNTTYG	4 cut(s)	508, 540, 1947, 1979
AseI	ATTAAT	1 cut(s)	773
AspLEI	GCGC	4 cut(s)	66, 1107, 1750, 1850
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	7 cut(s)	65, 174, 362, 712, 1399, 1637, 1778
AsuII	TTCGAA	2 cut(s)	385, 1208
AsuNHI	GCTAGC	1 cut(s)	1235
AvaI	CYCGRG	1 cut(s)	1649
AvaII	GGWCC	3 cut(s)	749, 2108, 2625
AxyI	CCTNAGG	1 cut(s)	1317
BaeGI	GKGCMC	4 cut(s)	409, 1440, 1834, 2483
BamHI	GGATCC	2 cut(s)	482, 2584
BanI	GGYRCC	3 cut(s)	38, 71, 1104
BanII	GRGCYC	2 cut(s)	534, 2483
BarI	GAAGNNNNNNTAC	2 cut(s)	1737, 1769
BbsI	GAAGAC	3 cut(s)	376, 773, 2001
Bbv12I	GWGCWC	4 cut(s)	409, 1440, 2158, 2563
BcgI	CGANNNNNNTGC	4 cut(s)	2287, 2321, 2495, 2529
BciT130I	CCWGG	7 cut(s)	279, 296, 756, 956, 1110, 1146, 1640
BciVI	GTATCC	1 cut(s)	2438
BclI	TGATCA	1 cut(s)	607
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	2 cut(s)	2073, 2697
BcuI	ACTAGT	1 cut(s)	707
BfaI	CTAG	8 cut(s)	708, 1236, 1443, 1697, 1725, 2415, 2528, 2589
BfmI	CTRYAG	4 cut(s)	596, 1475, 2306, 2465
BfoI	RGCGCY	2 cut(s)	1108, 1751
BfuAI	ACCTGC	1 cut(s)	414
BfuI	GTATCC	1 cut(s)	2438
BlpI	GCTNAGC	1 cut(s)	854
Bme1390I	CCNGG	8 cut(s)	156, 279, 296, 756, 956, 1110, 1146, 1640
Bme18I	GGWCC	3 cut(s)	749, 2108, 2625
BmeT110I	CYCGRG	1 cut(s)	1649
BmgBI	CACGTC	1 cut(s)	203
BmrFI	CCNGG	8 cut(s)	156, 279, 296, 756, 956, 1110, 1146, 1640
BmrI	ACTGGG	1 cut(s)	771
BmtI	GCTAGC	1 cut(s)	1239
BmuI	ACTGGG	1 cut(s)	771
BpiI	GAAGAC	3 cut(s)	376, 773, 2001
Bpu10I	CCTNAGC	1 cut(s)	787
Bpu1102I	GCTNAGC	1 cut(s)	854
Bpu14I	TTCGAA	2 cut(s)	385, 1208
BpuEI	CTTGAG	4 cut(s)	28, 228, 2502, 2672
BpuMI	CCSGG	1 cut(s)	156
Bsa29I	ATCGAT	1 cut(s)	435
BsaAI	YACGTR	1 cut(s)	2449
BsaBI	GATNNNNATC	1 cut(s)	2361
BsaHI	GRCGYC	2 cut(s)	1105, 1784
BsaI	GGTCTC	1 cut(s)	2073
BsaJI	CCNNGG	6 cut(s)	728, 804, 1042, 1108, 1604, 2133
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	7 cut(s)	458, 729, 730, 731, 761, 1145, 2214
Bse118I	RCCGGY	1 cut(s)	1976
Bse1I	ACTGG	2 cut(s)	766, 1678
Bse21I	CCTNAGG	1 cut(s)	1317
Bse3DI	GCAATG	1 cut(s)	1010
Bse8I	GATNNNNATC	1 cut(s)	2361
BseBI	CCWGG	7 cut(s)	279, 296, 756, 956, 1110, 1146, 1640
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	6 cut(s)	728, 804, 1042, 1108, 1604, 2133
BseJI	GATNNNNATC	1 cut(s)	2361
BseLI	CCNNNNNNNGG	7 cut(s)	458, 729, 730, 731, 761, 1145, 2214
BseMI	GCAATG	1 cut(s)	1010
BseMII	CTCAG	7 cut(s)	501, 582, 1331, 2084, 2136, 2194, 2283
BseNI	ACTGG	2 cut(s)	766, 1678
BseSI	GKGCMC	4 cut(s)	409, 1440, 1834, 2483
BseYI	CCCAGC	3 cut(s)	551, 557, 1411
BsgI	GTGCAG	3 cut(s)	864, 2469, 2639
Bsh1236I	CGCG	2 cut(s)	66, 1850
BshNI	GGYRCC	3 cut(s)	38, 71, 1104
BshVI	ATCGAT	1 cut(s)	435
BsiHKAI	GWGCWC	4 cut(s)	409, 1440, 2158, 2563
BsiHKCI	CYCGRG	1 cut(s)	1649
BsiSI	CCGG	2 cut(s)	155, 1977
BslFI	GGGAC	1 cut(s)	1838
BslI	CCNNNNNNNGG	7 cut(s)	458, 729, 730, 731, 761, 1145, 2214
BsmAI	GTCTC	2 cut(s)	2073, 2697
BsmFI	GGGAC	1 cut(s)	1838
BsmI	GAATGC	2 cut(s)	2345, 2466
Bso31I	GGTCTC	1 cut(s)	2073
BsoBI	CYCGRG	1 cut(s)	1649
Bsp119I	TTCGAA	2 cut(s)	385, 1208
Bsp120I	GGGCCC	1 cut(s)	2479
Bsp1286I	GDGCHC	7 cut(s)	409, 534, 1440, 1834, 2158, 2483, 2563
Bsp1720I	GCTNAGC	1 cut(s)	854
BspACI	CCGC	7 cut(s)	75, 814, 1102, 1569, 1850, 2106, 2623
BspCNI	CTCAG	7 cut(s)	500, 581, 1330, 2083, 2137, 2193, 2282
BspDI	ATCGAT	1 cut(s)	435
BspFNI	CGCG	2 cut(s)	66, 1850
BspHI	TCATGA	1 cut(s)	1497
BspMAI	CTGCAG	4 cut(s)	600, 1479, 2310, 2469
BspMI	ACCTGC	1 cut(s)	414
BspOI	GCTAGC	1 cut(s)	1239
BspPI	GGATC	8 cut(s)	269, 477, 490, 963, 1650, 1715, 2579, 2592
BspT104I	TTCGAA	2 cut(s)	385, 1208
BspT107I	GGYRCC	3 cut(s)	38, 71, 1104
BspTNI	GGTCTC	1 cut(s)	2073
BsrDI	GCAATG	1 cut(s)	1010
BsrFI	RCCGGY	1 cut(s)	1976
BsrI	ACTGG	2 cut(s)	766, 1678
BssAI	RCCGGY	1 cut(s)	1976
BssECI	CCNNGG	6 cut(s)	728, 804, 1042, 1108, 1604, 2133
BssNI	GRCGYC	2 cut(s)	1105, 1784
BssT1I	CCWWGG	3 cut(s)	728, 804, 2133
Bst2UI	CCWGG	7 cut(s)	279, 296, 756, 956, 1110, 1146, 1640
Bst4CI	ACNGT	5 cut(s)	119, 1184, 1809, 2018, 2542
Bst6I	CTCTTC	2 cut(s)	1716, 1945
BstACI	GRCGYC	2 cut(s)	1105, 1784
BstAPI	GCANNNNNTGC	1 cut(s)	2492
BstBAI	YACGTR	1 cut(s)	2449
BstBI	TTCGAA	2 cut(s)	385, 1208
BstC8I	GCNNGC	8 cut(s)	811, 1017, 1230, 1237, 1475, 1656, 2104, 2154
BstDEI	CTNAG	9 cut(s)	487, 568, 787, 854, 1317, 2070, 2145, 2180, 2269
BstDSI	CCRYGG	1 cut(s)	1042
BstFNI	CGCG	2 cut(s)	66, 1850
BstH2I	RGCGCY	2 cut(s)	1108, 1751
BstHHI	GCGC	4 cut(s)	66, 1107, 1750, 1850
BstMAI	GTCTC	2 cut(s)	2073, 2697
BstNI	CCWGG	7 cut(s)	279, 296, 756, 956, 1110, 1146, 1640
BstNSI	RCATGY	1 cut(s)	2340
BstSCI	CCNGG	8 cut(s)	154, 277, 294, 754, 954, 1108, 1144, 1638
BstSFI	CTRYAG	4 cut(s)	596, 1475, 2306, 2465
BstSLI	GKGCMC	4 cut(s)	409, 1440, 1834, 2483
BstUI	CGCG	2 cut(s)	66, 1850
BstV2I	GAAGAC	3 cut(s)	376, 773, 2001
BstX2I	RGATCY	3 cut(s)	482, 968, 2584
BstYI	RGATCY	3 cut(s)	482, 968, 2584
Bsu15I	ATCGAT	1 cut(s)	435
Bsu36I	CCTNAGG	1 cut(s)	1317
BsuI	GTATCC	1 cut(s)	2438
BsuTUI	ATCGAT	1 cut(s)	435
BtgI	CCRYGG	1 cut(s)	1042
BtgZI	GCGATG	2 cut(s)	81, 2727
BtrI	CACGTC	1 cut(s)	203
BtsI	GCAGTG	1 cut(s)	1539
BtsIMutI	CAGTG	3 cut(s)	1278, 1539, 2486
BveI	ACCTGC	1 cut(s)	414
Cac8I	GCNNGC	8 cut(s)	811, 1017, 1230, 1237, 1475, 1656, 2104, 2154
CciI	TCATGA	1 cut(s)	1497
CfoI	GCGC	4 cut(s)	66, 1107, 1750, 1850
Cfr10I	RCCGGY	1 cut(s)	1976
ClaI	ATCGAT	1 cut(s)	435
CseI	GACGC	2 cut(s)	488, 1792
Csp6I	GTAC	5 cut(s)	759, 1754, 1935, 1980, 2453
CviQI	GTAC	5 cut(s)	759, 1754, 1935, 1980, 2453
DdeI	CTNAG	9 cut(s)	487, 568, 787, 854, 1317, 2070, 2145, 2180, 2269
DinI	GGCGCC	1 cut(s)	1106
DraI	TTTAAA	1 cut(s)	1266
DrdI	GACNNNNNNGTC	1 cut(s)	2065
DseDI	GACNNNNNNGTC	1 cut(s)	2065
EaeI	YGGCCR	2 cut(s)	811, 1974
Eam1104I	CTCTTC	2 cut(s)	1716, 1945
EarI	CTCTTC	2 cut(s)	1716, 1945
Eco130I	CCWWGG	3 cut(s)	728, 804, 2133
Eco147I	AGGCCT	1 cut(s)	1603
Eco24I	GRGCYC	2 cut(s)	534, 2483
Eco31I	GGTCTC	1 cut(s)	2073
Eco47I	GGWCC	3 cut(s)	749, 2108, 2625
Eco47III	AGCGCT	1 cut(s)	1749
Eco57I	CTGAAG	3 cut(s)	683, 1302, 1938
Eco81I	CCTNAGG	1 cut(s)	1317
Eco88I	CYCGRG	1 cut(s)	1649
EcoO109I	RGGNCCY	1 cut(s)	2480
EcoRI	GAATTC	2 cut(s)	1127, 2199
EcoRII	CCWGG	7 cut(s)	277, 294, 754, 954, 1108, 1144, 1638
EcoT14I	CCWWGG	3 cut(s)	728, 804, 2133
EcoT22I	ATGCAT	1 cut(s)	2733
EcoT38I	GRGCYC	2 cut(s)	534, 2483
EgeI	GGCGCC	1 cut(s)	1106
EheI	GGCGCC	1 cut(s)	1106
ErhI	CCWWGG	3 cut(s)	728, 804, 2133
FalI	AAGNNNNNCTT	2 cut(s)	1367, 1399
FaqI	GGGAC	1 cut(s)	1838
FbaI	TGATCA	1 cut(s)	607
FblI	GTMKAC	3 cut(s)	582, 1007, 1323
FriOI	GRGCYC	2 cut(s)	534, 2483
FspBI	CTAG	8 cut(s)	708, 1236, 1443, 1697, 1725, 2415, 2528, 2589
GlaI	GCGC	4 cut(s)	65, 1106, 1749, 1849
GsaI	CCCAGC	3 cut(s)	555, 561, 1415
HaeII	RGCGCY	2 cut(s)	1108, 1751
HapII	CCGG	2 cut(s)	155, 1977
HgaI	GACGC	2 cut(s)	488, 1792
HhaI	GCGC	4 cut(s)	66, 1107, 1750, 1850
Hin1I	GRCGYC	2 cut(s)	1105, 1784
Hin6I	GCGC	4 cut(s)	64, 1105, 1748, 1848
HinP1I	GCGC	4 cut(s)	64, 1105, 1748, 1848
HincII	GTYRAC	3 cut(s)	292, 1401, 2317
HindII	GTYRAC	3 cut(s)	292, 1401, 2317
HindIII	AAGCTT	1 cut(s)	1553
HinfI	GANTC	6 cut(s)	151, 524, 1037, 1358, 2141, 2318
HpaII	CCGG	2 cut(s)	155, 1977
HphI	GGTGA	7 cut(s)	65, 174, 362, 712, 1399, 1637, 1778
Hpy166II	GTNNAC	9 cut(s)	292, 407, 583, 1008, 1046, 1324, 1401, 1438, 2317
Hpy8I	GTNNAC	9 cut(s)	292, 407, 583, 1008, 1046, 1324, 1401, 1438, 2317
Hpy99I	CGWCG	3 cut(s)	204, 225, 1786
HpyAV	CCTTC	9 cut(s)	15, 200, 658, 832, 933, 1215, 1622, 2080, 2671
HpyCH4III	ACNGT	5 cut(s)	119, 1184, 1809, 2018, 2542
HpyCH4IV	ACGT	6 cut(s)	202, 373, 1910, 1957, 2448, 2633
HpyF3I	CTNAG	9 cut(s)	487, 568, 787, 854, 1317, 2070, 2145, 2180, 2269
HpySE526I	ACGT	6 cut(s)	202, 373, 1910, 1957, 2448, 2633
Hsp92I	GRCGYC	2 cut(s)	1105, 1784
HspAI	GCGC	4 cut(s)	64, 1105, 1748, 1848
KasI	GGCGCC	1 cut(s)	1104
Ksp22I	TGATCA	1 cut(s)	607
LmnI	GCTCC	7 cut(s)	529, 964, 1064, 1094, 1225, 2095, 2260
MaeI	CTAG	8 cut(s)	708, 1236, 1443, 1697, 1725, 2415, 2528, 2589
MaeII	ACGT	6 cut(s)	202, 373, 1910, 1957, 2448, 2633
MaeIII	GTNAC	5 cut(s)	8, 2332, 2469, 2536, 2545
MboII	GAAGA	9 cut(s)	37, 378, 381, 778, 1604, 1703, 1932, 2006, 2543
MfeI	CAATTG	2 cut(s)	884, 1086
MflI	RGATCY	3 cut(s)	482, 968, 2584
MhlI	GDGCHC	7 cut(s)	409, 534, 1440, 1834, 2158, 2483, 2563
Mly113I	GGCGCC	1 cut(s)	1105
MlyI	GAGTC	1 cut(s)	2312
MmeI	TCCRAC	4 cut(s)	1166, 1225, 1536, 2028
Mph1103I	ATGCAT	1 cut(s)	2733
MseI	TTAA	4 cut(s)	773, 1217, 1265, 2735
MslI	CAYNNNNRTG	1 cut(s)	1425
MspA1I	CMGCKG	3 cut(s)	601, 1415, 2623
MspI	CCGG	2 cut(s)	155, 1977
MspR9I	CCNGG	8 cut(s)	156, 279, 296, 756, 956, 1110, 1146, 1640
MunI	CAATTG	2 cut(s)	884, 1086
Mva1269I	GAATGC	2 cut(s)	2345, 2466
MvaI	CCWGG	7 cut(s)	279, 296, 756, 956, 1110, 1146, 1640
MvnI	CGCG	2 cut(s)	66, 1850
NarI	GGCGCC	1 cut(s)	1105
NciI	CCSGG	1 cut(s)	156
NheI	GCTAGC	1 cut(s)	1235
NmeAIII	GCCGAG	2 cut(s)	1585, 1824
NmuCI	GTSAC	3 cut(s)	8, 2469, 2545
NsiI	ATGCAT	1 cut(s)	2733
NspI	RCATGY	1 cut(s)	2340
NspV	TTCGAA	2 cut(s)	385, 1208
OliI	CACNNNNGTG	1 cut(s)	1425
PagI	TCATGA	1 cut(s)	1497
PceI	AGGCCT	1 cut(s)	1603
PciI	ACATGT	1 cut(s)	2336
PcsI	WCGNNNNNNNCGW	1 cut(s)	1300
PctI	GAATGC	2 cut(s)	2345, 2466
PfeI	GAWTC	5 cut(s)	151, 524, 1037, 1358, 2141
PflFI	GACNNNGTC	1 cut(s)	219
PleI	GAGTC	1 cut(s)	2312
PluTI	GGCGCC	1 cut(s)	1108
PpsI	GAGTC	1 cut(s)	2312
Ppu21I	YACGTR	1 cut(s)	2449
PscI	ACATGT	1 cut(s)	2336
PshBI	ATTAAT	1 cut(s)	773
PsiI	TTATAA	1 cut(s)	2391
Psp1406I	AACGTT	1 cut(s)	1957
Psp6I	CCWGG	7 cut(s)	277, 294, 754, 954, 1108, 1144, 1638
PspFI	CCCAGC	3 cut(s)	551, 557, 1411
PspGI	CCWGG	7 cut(s)	277, 294, 754, 954, 1108, 1144, 1638
PspOMI	GGGCCC	1 cut(s)	2479
PstI	CTGCAG	4 cut(s)	600, 1479, 2310, 2469
PsuI	RGATCY	3 cut(s)	482, 968, 2584
PsyI	GACNNNGTC	1 cut(s)	219
PvuII	CAGCTG	2 cut(s)	601, 1415
RsaI	GTAC	5 cut(s)	760, 1755, 1936, 1981, 2454
RsaNI	GTAC	5 cut(s)	759, 1754, 1935, 1980, 2453
RseI	CAYNNNNRTG	1 cut(s)	1425
SaqAI	TTAA	4 cut(s)	773, 1217, 1265, 2735
SchI	GAGTC	1 cut(s)	2312
ScrFI	CCNGG	8 cut(s)	156, 279, 296, 756, 956, 1110, 1146, 1640
SduI	GDGCHC	7 cut(s)	409, 534, 1440, 1834, 2158, 2483, 2563
SfcI	CTRYAG	4 cut(s)	596, 1475, 2306, 2465
SfoI	GGCGCC	1 cut(s)	1106
SfuI	TTCGAA	2 cut(s)	385, 1208
SinI	GGWCC	3 cut(s)	749, 2108, 2625
SmiMI	CAYNNNNRTG	1 cut(s)	1425
SmlI	CTYRAG	4 cut(s)	43, 243, 2517, 2651
SmoI	CTYRAG	4 cut(s)	43, 243, 2517, 2651
SpeI	ACTAGT	1 cut(s)	707
SseBI	AGGCCT	1 cut(s)	1603
SsiI	CCGC	7 cut(s)	75, 814, 1102, 1569, 1850, 2106, 2623
SspDI	GGCGCC	1 cut(s)	1104
SspI	AATATT	1 cut(s)	1947
SspMI	CTAG	8 cut(s)	708, 1236, 1443, 1697, 1725, 2415, 2528, 2589
StuI	AGGCCT	1 cut(s)	1603
StyD4I	CCNGG	8 cut(s)	154, 277, 294, 754, 954, 1108, 1144, 1638
StyI	CCWWGG	3 cut(s)	728, 804, 2133
TaaI	ACNGT	5 cut(s)	119, 1184, 1809, 2018, 2542
TaiI	ACGT	6 cut(s)	205, 376, 1913, 1960, 2451, 2636
TauI	GCSGC	2 cut(s)	816, 1105
TfiI	GAWTC	5 cut(s)	151, 524, 1037, 1358, 2141
Tru1I	TTAA	4 cut(s)	773, 1217, 1265, 2735
Tru9I	TTAA	4 cut(s)	773, 1217, 1265, 2735
TscAI	CASTG	3 cut(s)	1285, 1539, 2493
TseFI	GTSAC	3 cut(s)	8, 2469, 2545
Tsp45I	GTSAC	3 cut(s)	8, 2469, 2545
TspDTI	ATGAA	8 cut(s)	149, 482, 1514, 1679, 1683, 2007, 2690, 2784
TspGWI	ACGGA	3 cut(s)	1292, 1549, 2715
TspRI	CASTG	3 cut(s)	1285, 1539, 2493
Tth111I	GACNNNGTC	1 cut(s)	219
VneI	GTGCAC	2 cut(s)	405, 1436
VpaK11BI	GGWCC	3 cut(s)	749, 2108, 2625
VspI	ATTAAT	1 cut(s)	773
XapI	RAATTY	5 cut(s)	1127, 1167, 1340, 2199, 2756
XceI	RCATGY	1 cut(s)	2340
XmiI	GTMKAC	3 cut(s)	582, 1007, 1323
XspI	CTAG	8 cut(s)	708, 1236, 1443, 1697, 1725, 2415, 2528, 2589
Zsp2I	ATGCAT	1 cut(s)	2733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.