Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0008427

Physical Location & Seq

Genomic Coordinates Forward (+)

2249031 .. 2253769

Gene Structure 4739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02520.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGCGCAGGATGTTGACAACTGATGGCCAAGAGGTTTTTGAAGAAGTGTTGGAAATTGTTTCATATATGACATTTTTCTCACCAACAATATCTTTAGATATGTGGAGTCTCTGGCCATTGATGATGGAAGCATTGGCAGAATGGGCTATTGATTTCTTTCCAAATATTCTGGTTCCTTTGGATAACTACATATCCAGGGGGACAGCACAGTTCCTCACTTGTAAAGAACCAGACTACCAGCAAAGCCTTTGGAATATGATTGCAGCTATCATGGCAGATAAAAATATGGAAGACGGTGATATTGAGCCTGCTCCAAAGCTCATTCAAGTAGTTTTTCAGAACTGCAGAGGGCAGGTTGATCAATCGGTTGAACCATACCTTAGAATTACAGTTGAGCGGTTACGCCGATCTGAGAAGCCGTACTTGAAATGCCTTCTCATTGAAGTTATTGCGGATGCACTGTACTATAATGCAGCTTTGGCGCTCAGCATATTGCAGAACCTGGGTGTTGCAACAGAGATCTTTAATCTTTGGTTCCAGATGCTGCAACAGGTCAAGAAAAGTGGTGTGCGTGCAAATTTTAAGAGGGAGCATGACAAAAAAGTATGCTGTCTGGGTTTGACATCATTAATGATACTCCCAGCTGAACAGTTGCCTGGGGAGGCATTGGGCCGTGTTTTCAGGGCTGCCCTTGATCTCCTAGTTGCGTACAAGGAACAAGTTGCAGAAGCTGCAAAGGAGGAAGAACCAGAAGATGACGATGAAATGGATGGTTTCCCAACTGATGATGATGATGAATATGGTGATGGATCTGACAAGGAAATGGGACTTGATGCCGAGGATGGTGATGAAGTTGATAGCGTTAAACTTCAAAAGTTAGCTGCACAGGCAAAGTCTTTCCGCCCTAGTGATGAATATGACTCAGACTCGGACGATGATTTCAGTGATGATGAGGAATTACAGTCACCAATTGATGATGTGGACCCTTTTATCTTTTTTGTTGATGCAGTCAAAGCCATGCAAGCATCAGATCCGTTGAGAGTTCACAGCCTTATGCAGACTCTGGACTTCCAGTATCAGGCTCTTGCAAATGGGGTTGCACAGCATGCTGAACAGAGGAGAGCAGAGATTGAAAAAGAGAAGATGGAGAAGGCAGCAGCTGCCACAGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008565 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016441 GO:0016458 GO:0017038 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0023052 GO:0031047 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0035194 GO:0035195 GO:0035280 GO:0040029 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0070922 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko04013 map04013

Pfam Domains

Protein Families

Cse1 IBN_N

Protein Analysis

392

Amino Acids

44.24

Weight (kDa)

4.27

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31660 AT3G59020 AT3G59020
fragaria_vesca	FvH4_4g12200
malus_domestica	MD00G1128300.v1.1 MD04G1028800.v1.1
prunus_persica	Prupe.1G180500_v2.0.a1 Prupe.1G180500_v2.0.a1 Prupe.1G180500_v2.0.a1
pyrus_communis	pycom04g02510 pycom04g02520 pycom13g29470
rosa_chinensis	RchiOBHm_Chr4g0409961
rosa_laevigata	RLG00000008510
rosa_multiflora	Rmu_sc0000365.1_g000108 Rmu_sc0000987.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354450
rosa_rugosa	Rorug04G0099700
rosa_samantha	Rh4AG158700 Rh4BG158100 Rh4CG169500 Rh4DG153600
rosa_wichuraiana	Rw4G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	343
AccBSI	CCGCTC	1 cut(s)	397
AciI	CCGC	3 cut(s)	397, 452, 901
AclWI	GGATC	2 cut(s)	817, 1025
AcoI	YGGCCR	2 cut(s)	25, 113
AcsI	RAATTY	1 cut(s)	577
AfaI	GTAC	3 cut(s)	422, 464, 710
AfiI	CCNNNNNNNGG	1 cut(s)	1078
AgsI	TTSAA	7 cut(s)	41, 326, 371, 427, 443, 872, 1133
AjnI	CCWGG	3 cut(s)	194, 501, 655
AluBI	AGCT	8 cut(s)	266, 319, 476, 644, 731, 881, 1160, 1169
AluI	AGCT	8 cut(s)	266, 319, 476, 644, 731, 881, 1160, 1169
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	2 cut(s)	817, 1025
AlwNI	CAGNNNCTG	5 cut(s)	502, 544, 731, 1063, 1160
AoxI	GGCC	3 cut(s)	25, 113, 670
ApeKI	GCWGC	9 cut(s)	263, 473, 544, 686, 731, 881, 1154, 1157, 1160
ApoI	RAATTY	1 cut(s)	577
AseI	ATTAAT	1 cut(s)	629
AspLEI	GCGC	2 cut(s)	6, 484
AspS9I	GGNCC	2 cut(s)	670, 982
AsuHPI	GGTGA	5 cut(s)	72, 308, 815, 857, 957
AvaII	GGWCC	1 cut(s)	982
BalI	TGGCCA	2 cut(s)	27, 115
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	9 cut(s)	275, 485, 531, 673, 718, 868, 1147, 1166, 1169
BccI	CCATC	6 cut(s)	17, 118, 764, 800, 836, 1138
BceAI	ACGGC	2 cut(s)	403, 657
BciT130I	CCWGG	3 cut(s)	196, 503, 657
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	701, 906
BfmI	CTRYAG	1 cut(s)	343
BfoI	RGCGCY	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	343
BglII	AGATCT	1 cut(s)	519
BisI	GCNGC	9 cut(s)	264, 474, 545, 687, 732, 882, 1155, 1158, 1161
BlpI	GCTNAGC	1 cut(s)	485
BlsI	GCNGC	9 cut(s)	265, 475, 546, 688, 733, 883, 1156, 1159, 1162
Bme1390I	CCNGG	3 cut(s)	196, 503, 657
Bme18I	GGWCC	1 cut(s)	982
BmgT120I	GGNCC	2 cut(s)	670, 982
BmiI	GGNNCC	3 cut(s)	174, 536, 984
BmrFI	CCNGG	3 cut(s)	196, 503, 657
BmsI	GCATC	5 cut(s)	445, 531, 823, 994, 1034
BpiI	GAAGAC	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	485
BsaJI	CCNNGG	4 cut(s)	195, 502, 656, 837
Bsc4I	CCNNNNNNNGG	1 cut(s)	1078
Bse1I	ACTGG	1 cut(s)	1072
BseBI	CCWGG	3 cut(s)	196, 503, 657
BseDI	CCNNGG	4 cut(s)	195, 502, 656, 837
BseGI	GGATG	4 cut(s)	15, 460, 775, 847
BseLI	CCNNNNNNNGG	1 cut(s)	1078
BseMII	CTCAG	3 cut(s)	402, 499, 936
BseNI	ACTGG	1 cut(s)	1072
BseRI	GAGGAG	1 cut(s)	1132
BseXI	GCAGC	9 cut(s)	275, 485, 531, 673, 718, 868, 1147, 1166, 1169
BseYI	CCCAGC	1 cut(s)	640
BsgI	GTGCAG	1 cut(s)	867
BshFI	GGCC	3 cut(s)	27, 115, 672
BslFI	GGGAC	2 cut(s)	214, 840
BslI	CCNNNNNNNGG	1 cut(s)	1078
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	214, 840
BsnI	GGCC	3 cut(s)	27, 115, 672
Bsp143I	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
Bsp1720I	GCTNAGC	1 cut(s)	485
BspACI	CCGC	3 cut(s)	397, 452, 901
BspANI	GGCC	3 cut(s)	27, 115, 672
BspCNI	CTCAG	3 cut(s)	403, 498, 935
BspHI	TCATGA	1 cut(s)	1172
BspLI	GGNNCC	3 cut(s)	174, 536, 984
BspMAI	CTGCAG	1 cut(s)	347
BspMI	ACCTGC	1 cut(s)	343
BspPI	GGATC	2 cut(s)	817, 1025
BsrBI	CCGCTC	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	1072
BssECI	CCNNGG	4 cut(s)	195, 502, 656, 837
BssMI	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
Bst2UI	CCWGG	3 cut(s)	196, 503, 657
Bst4CI	ACNGT	6 cut(s)	210, 296, 391, 462, 651, 963
BstAPI	GCANNNNNTGC	3 cut(s)	731, 1106, 1160
BstC8I	GCNNGC	4 cut(s)	309, 573, 1023, 1107
BstDEI	CTNAG	4 cut(s)	380, 411, 485, 922
BstF5I	GGATG	4 cut(s)	15, 460, 775, 847
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	2 cut(s)	6, 484
BstKTI	GATC	6 cut(s)	361, 410, 522, 697, 812, 1033
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
BstNI	CCWGG	3 cut(s)	196, 503, 657
BstNSI	RCATGY	1 cut(s)	1109
BstSCI	CCNGG	3 cut(s)	194, 501, 655
BstSFI	CTRYAG	1 cut(s)	343
BstV1I	GCAGC	9 cut(s)	275, 485, 531, 673, 718, 868, 1147, 1166, 1169
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	3 cut(s)	519, 809, 1030
BstYI	RGATCY	3 cut(s)	519, 809, 1030
BsuRI	GGCC	3 cut(s)	27, 115, 672
BtsCI	GGATG	4 cut(s)	15, 460, 775, 847
BtsIMutI	CAGTG	2 cut(s)	458, 949
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	4 cut(s)	309, 573, 1023, 1107
CaiI	CAGNNNCTG	5 cut(s)	502, 544, 731, 1063, 1160
CciI	TCATGA	1 cut(s)	1172
CfoI	GCGC	2 cut(s)	6, 484
Cfr13I	GGNCC	2 cut(s)	670, 982
Csp6I	GTAC	3 cut(s)	421, 463, 709
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviAII	CATG	5 cut(s)	271, 593, 1018, 1106, 1173
CviQI	GTAC	3 cut(s)	421, 463, 709
DdeI	CTNAG	4 cut(s)	380, 411, 485, 922
DpnI	GATC	6 cut(s)	360, 409, 521, 696, 811, 1032
DpnII	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
EaeI	YGGCCR	2 cut(s)	25, 113
EciI	GGCGGA	1 cut(s)	890
Eco47I	GGWCC	1 cut(s)	982
EcoRII	CCWGG	3 cut(s)	194, 501, 655
FaeI	CATG	5 cut(s)	274, 596, 1021, 1109, 1176
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	2 cut(s)	214, 840
FatI	CATG	5 cut(s)	270, 592, 1017, 1105, 1172
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	9 cut(s)	264, 474, 545, 687, 732, 882, 1155, 1158, 1161
FokI	GGATG	4 cut(s)	22, 467, 782, 854
Fsp4HI	GCNGC	9 cut(s)	264, 474, 545, 687, 732, 882, 1155, 1158, 1161
FspBI	CTAG	2 cut(s)	701, 906
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 483
GluI	GCNGC	9 cut(s)	264, 474, 545, 687, 732, 882, 1155, 1158, 1161
GsaI	CCCAGC	1 cut(s)	644
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	3 cut(s)	27, 115, 672
HhaI	GCGC	2 cut(s)	6, 484
Hin1II	CATG	5 cut(s)	274, 596, 1021, 1109, 1176
Hin6I	GCGC	2 cut(s)	4, 482
HinP1I	GCGC	2 cut(s)	4, 482
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	4 cut(s)	106, 920, 926, 1060
HphI	GGTGA	5 cut(s)	72, 308, 815, 857, 957
Hpy166II	GTNNAC	3 cut(s)	15, 982, 1045
Hpy188I	TCNGA	6 cut(s)	339, 412, 814, 925, 931, 1030
Hpy188III	TCNNGA	4 cut(s)	538, 556, 1064, 1173
Hpy8I	GTNNAC	3 cut(s)	15, 982, 1045
HpyAV	CCTTC	2 cut(s)	443, 1144
HpyCH4III	ACNGT	6 cut(s)	210, 296, 391, 462, 651, 963
HpyF3I	CTNAG	4 cut(s)	380, 411, 485, 922
Hsp92II	CATG	5 cut(s)	274, 596, 1021, 1109, 1176
HspAI	GCGC	2 cut(s)	4, 482
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
LmnI	GCTCC	2 cut(s)	316, 589
Lsp1109I	GCAGC	9 cut(s)	275, 485, 531, 673, 718, 868, 1147, 1166, 1169
LweI	GCATC	5 cut(s)	445, 531, 823, 994, 1034
MaeI	CTAG	2 cut(s)	701, 906
MaeIII	GTNAC	2 cut(s)	399, 963
MalI	GATC	6 cut(s)	360, 409, 521, 696, 811, 1032
MbiI	CCGCTC	1 cut(s)	397
MboI	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
MboII	GAAGA	5 cut(s)	53, 302, 755, 764, 1153
MfeI	CAATTG	1 cut(s)	969
MflI	RGATCY	3 cut(s)	519, 809, 1030
MlsI	TGGCCA	2 cut(s)	27, 115
MluCI	AATT	5 cut(s)	54, 384, 577, 956, 969
MluNI	TGGCCA	2 cut(s)	27, 115
MlyI	GAGTC	4 cut(s)	115, 914, 920, 1054
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	9 cut(s)	25, 224, 341, 579, 655, 733, 832, 946, 1110
Mox20I	TGGCCA	2 cut(s)	27, 115
MscI	TGGCCA	2 cut(s)	27, 115
MseI	TTAA	4 cut(s)	525, 582, 629, 864
Msp20I	TGGCCA	2 cut(s)	27, 115
MspA1I	CMGCKG	2 cut(s)	644, 1160
MspR9I	CCNGG	3 cut(s)	196, 503, 657
MunI	CAATTG	1 cut(s)	969
MvaI	CCWGG	3 cut(s)	196, 503, 657
NdeII	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
NlaIII	CATG	5 cut(s)	274, 596, 1021, 1109, 1176
NlaIV	GGNNCC	3 cut(s)	174, 536, 984
NmeAIII	GCCGAG	1 cut(s)	862
NmuCI	GTSAC	1 cut(s)	963
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	1 cut(s)	1109
PaeI	GCATGC	1 cut(s)	1109
PagI	TCATGA	1 cut(s)	1172
PkrI	GCNGC	9 cut(s)	265, 475, 546, 688, 733, 883, 1156, 1159, 1162
PleI	GAGTC	4 cut(s)	114, 914, 920, 1054
PpsI	GAGTC	4 cut(s)	114, 914, 920, 1054
PshBI	ATTAAT	1 cut(s)	629
Psp6I	CCWGG	3 cut(s)	194, 501, 655
PspFI	CCCAGC	1 cut(s)	640
PspGI	CCWGG	3 cut(s)	194, 501, 655
PspN4I	GGNNCC	3 cut(s)	174, 536, 984
PspPI	GGNCC	2 cut(s)	670, 982
PstI	CTGCAG	1 cut(s)	347
PstNI	CAGNNNCTG	5 cut(s)	502, 544, 731, 1063, 1160
PsuI	RGATCY	3 cut(s)	519, 809, 1030
PvuII	CAGCTG	2 cut(s)	644, 1160
RsaI	GTAC	3 cut(s)	422, 464, 710
RsaNI	GTAC	3 cut(s)	421, 463, 709
SaqAI	TTAA	4 cut(s)	525, 582, 629, 864
SatI	GCNGC	9 cut(s)	264, 474, 545, 687, 732, 882, 1155, 1158, 1161
Sau3AI	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
Sau96I	GGNCC	2 cut(s)	670, 982
SchI	GAGTC	4 cut(s)	115, 914, 920, 1054
ScrFI	CCNGG	3 cut(s)	196, 503, 657
SfaNI	GCATC	5 cut(s)	445, 531, 823, 994, 1034
SfcI	CTRYAG	1 cut(s)	343
SinI	GGWCC	1 cut(s)	982
SphI	GCATGC	1 cut(s)	1109
Sse9I	AATT	5 cut(s)	54, 384, 577, 956, 969
SsiI	CCGC	3 cut(s)	397, 452, 901
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	2 cut(s)	701, 906
StyD4I	CCNGG	3 cut(s)	194, 501, 655
TaaI	ACNGT	6 cut(s)	210, 296, 391, 462, 651, 963
TasI	AATT	5 cut(s)	54, 384, 577, 956, 969
TatI	WGTACW	1 cut(s)	462
Tru1I	TTAA	4 cut(s)	525, 582, 629, 864
Tru9I	TTAA	4 cut(s)	525, 582, 629, 864
TscAI	CASTG	2 cut(s)	465, 949
TseFI	GTSAC	1 cut(s)	963
TseI	GCWGC	9 cut(s)	263, 473, 544, 686, 731, 881, 1154, 1157, 1160
Tsp45I	GTSAC	1 cut(s)	963
TspDTI	ATGAA	6 cut(s)	51, 777, 810, 864, 927, 1161
TspGWI	ACGGA	1 cut(s)	1023
TspRI	CASTG	2 cut(s)	465, 949
VpaK11BI	GGWCC	1 cut(s)	982
VspI	ATTAAT	1 cut(s)	629
XapI	RAATTY	1 cut(s)	577
XceI	RCATGY	1 cut(s)	1109
XspI	CTAG	2 cut(s)	701, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.