Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008427

Physical Location & Seq

Genomic Coordinates Forward (+)

26450528 .. 26452997

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g29470.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTTGCAAATTATAGTGGACAGCAATTGTGACATGGCTGTGCGGCAAGTTGGCAGCATCCATTTCAAGAATTTCATTGCAAAGAACTGGTCACCTATTGATCCTGATGAGCAGCAGAAGATATCACAGAGTGATAAAGACGTCGTGAGGGATCACATTTTAGTCTTTGTCACACAGGTTCCCCCATTGTTAAGGGTACAGCTAGGTGAGTGCCTGAAGACAATTATTCATGCTGATTACCCTGAGCAGTGGCCACGCCTTTTAGACTGGGTGAAGCATAACTTACAAGATCAACAAGTCTATGGAGCTTTGTTTGTTTTGCGGATTCTCTCTAGAAAATATGAGTTCAAAACTGATGAGGAAAGGACACCAGTTTATCGCATCGTTGAGGAGACATTTCCACCTCTGCTTAATATATTCAACAGGCTTGTCCAAATACCCAACCCATCACTTGAAGTAGCAGATTTGATCAAGCTTATCTGTAAAATTTTCTGGTCATCCATATATCTAGAGATTCCAAAGCAACTATTTGATGGAAATGTGTTCAATGCTTGGATGATGCTTTTCTTAAACATATTGGAGAGACCTGTTCCTTCTGAAGGCCAGCCTTCAGATCCCGATCTTAGAAAAGCATGGGGGTGGTGGAAAGTGAAGAAATGGACTGTCCACATTTTAAATCGGCTGTACACTCGGTTTGGAGATTTAAAAATTCAACTGCCAGAAAACAAAGCATTTGCTCAAATGTTTCAGAGGAATTATGCAGGGAAGATTCTGGAGTGTCACTTAAATTTGTTGAATGTCGATCCGAACTGGTGGCTACTTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008565 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016441 GO:0016458 GO:0017038 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0023052 GO:0031047 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0035194 GO:0035195 GO:0035280 GO:0040029 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0070922 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko04013 map04013

Pfam Domains

Protein Families

Cse1 IBN_N

Protein Analysis

276

Amino Acids

32.52

Weight (kDa)

7.68

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31660 AT3G59020 AT3G59020
fragaria_vesca	FvH4_4g12200
malus_domestica	MD00G1128300.v1.1 MD04G1028800.v1.1
prunus_persica	Prupe.1G180500_v2.0.a1 Prupe.1G180500_v2.0.a1 Prupe.1G180500_v2.0.a1
pyrus_communis	pycom04g02510 pycom04g02520 pycom13g29470
rosa_chinensis	RchiOBHm_Chr4g0409961
rosa_laevigata	RLG00000008510
rosa_multiflora	Rmu_sc0000365.1_g000108 Rmu_sc0000987.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354450
rosa_rugosa	Rorug04G0099700
rosa_samantha	Rh4AG158700 Rh4BG158100 Rh4CG169500 Rh4DG153600
rosa_wichuraiana	Rw4G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	144
AciI	CCGC	2 cut(s)	43, 322
AclWI	GGATC	4 cut(s)	95, 159, 608, 797
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	4 cut(s)	70, 486, 708, 787
AcuI	CTGAAG	3 cut(s)	236, 594, 618
AcyI	GRCGYC	1 cut(s)	141
AdeI	CACNNNGTG	1 cut(s)	131
AfaI	GTAC	2 cut(s)	198, 686
AfiI	CCNNNNNNNGG	1 cut(s)	599
AgsI	TTSAA	7 cut(s)	67, 349, 421, 455, 547, 713, 796
AluBI	AGCT	3 cut(s)	202, 308, 475
AluI	AGCT	3 cut(s)	202, 308, 475
Alw26I	GTCTC	2 cut(s)	386, 577
AlwI	GGATC	4 cut(s)	95, 159, 608, 797
AoxI	GGCC	2 cut(s)	251, 601
ApeKI	GCWGC	2 cut(s)	54, 112
ApoI	RAATTY	4 cut(s)	70, 486, 708, 787
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AsuHPI	GGTGA	3 cut(s)	84, 218, 283
BalI	TGGCCA	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	224
BbvI	GCAGC	2 cut(s)	66, 124
BccI	CCATC	2 cut(s)	454, 527
BclI	TGATCA	1 cut(s)	468
BcoDI	GTCTC	2 cut(s)	386, 577
BfaI	CTAG	3 cut(s)	203, 333, 509
BisI	GCNGC	3 cut(s)	44, 55, 113
BlsI	GCNGC	3 cut(s)	45, 56, 114
BmiI	GGNNCC	1 cut(s)	180
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	3 cut(s)	66, 390, 549
BmuI	ACTGGG	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	794
Bpu10I	CCTNAGC	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	618
BsaHI	GRCGYC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse1I	ACTGG	4 cut(s)	92, 272, 371, 815
Bse3DI	GCAATG	1 cut(s)	75
Bse8I	GATNNNNATC	1 cut(s)	618
BseGI	GGATG	3 cut(s)	57, 497, 561
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	4 cut(s)	92, 272, 371, 815
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	2 cut(s)	66, 124
BshFI	GGCC	2 cut(s)	253, 603
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	2 cut(s)	386, 577
BsnI	GGCC	2 cut(s)	253, 603
Bso31I	GGTCTC	1 cut(s)	577
Bsp1407I	TGTACA	1 cut(s)	684
Bsp143I	GATC	7 cut(s)	100, 151, 289, 468, 613, 619, 802
BspACI	CCGC	2 cut(s)	43, 322
BspANI	GGCC	2 cut(s)	253, 603
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	4 cut(s)	95, 159, 608, 797
BspTNI	GGTCTC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	75
BsrGI	TGTACA	1 cut(s)	684
BsrI	ACTGG	4 cut(s)	92, 272, 371, 815
BssMI	GATC	7 cut(s)	100, 151, 289, 468, 613, 619, 802
BssNI	GRCGYC	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	664
BstACI	GRCGYC	1 cut(s)	141
BstAUI	TGTACA	1 cut(s)	684
BstC8I	GCNNGC	1 cut(s)	605
BstDEI	CTNAG	2 cut(s)	243, 623
BstEII	GGTNACC	1 cut(s)	90
BstENI	CCTNNNNNAGG	1 cut(s)	597
BstF5I	GGATG	3 cut(s)	57, 497, 561
BstKTI	GATC	7 cut(s)	103, 154, 292, 471, 616, 622, 805
BstMAI	GTCTC	2 cut(s)	386, 577
BstMBI	GATC	7 cut(s)	100, 151, 289, 468, 613, 619, 802
BstPI	GGTNACC	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	66, 124
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	2 cut(s)	253, 603
BtsCI	GGATG	3 cut(s)	57, 497, 561
BtsI	GCAGTG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	605
Csp6I	GTAC	2 cut(s)	197, 685
CviAII	CATG	3 cut(s)	34, 230, 633
CviQI	GTAC	2 cut(s)	197, 685
DdeI	CTNAG	2 cut(s)	243, 623
DpnI	GATC	7 cut(s)	102, 153, 291, 470, 615, 621, 804
DpnII	GATC	7 cut(s)	100, 151, 289, 468, 613, 619, 802
DraI	TTTAAA	2 cut(s)	675, 705
DraIII	CACNNNGTG	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	577
Eco32I	GATATC	1 cut(s)	123
Eco57I	CTGAAG	3 cut(s)	236, 594, 618
Eco91I	GGTNACC	1 cut(s)	90
EcoNI	CCTNNNNNAGG	1 cut(s)	597
EcoO65I	GGTNACC	1 cut(s)	90
EcoRV	GATATC	1 cut(s)	123
FaeI	CATG	3 cut(s)	37, 233, 636
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	3 cut(s)	33, 229, 632
FbaI	TGATCA	1 cut(s)	468
Fnu4HI	GCNGC	3 cut(s)	44, 55, 113
FokI	GGATG	3 cut(s)	44, 484, 568
Fsp4HI	GCNGC	3 cut(s)	44, 55, 113
FspBI	CTAG	3 cut(s)	203, 333, 509
GluI	GCNGC	3 cut(s)	44, 55, 113
GsuI	CTGGAG	1 cut(s)	794
HaeIII	GGCC	2 cut(s)	253, 603
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	3 cut(s)	37, 233, 636
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	3 cut(s)	325, 514, 769
HphI	GGTGA	3 cut(s)	84, 218, 283
Hpy166II	GTNNAC	3 cut(s)	19, 667, 687
Hpy188I	TCNGA	4 cut(s)	598, 613, 750, 807
Hpy188III	TCNNGA	7 cut(s)	67, 104, 145, 333, 509, 617, 773
Hpy8I	GTNNAC	3 cut(s)	19, 667, 687
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	3 cut(s)	593, 603, 618
HpyCH4III	ACNGT	1 cut(s)	664
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	3 cut(s)	7, 80, 761
HpyF3I	CTNAG	2 cut(s)	243, 623
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	3 cut(s)	37, 233, 636
Ksp22I	TGATCA	1 cut(s)	468
Kzo9I	GATC	7 cut(s)	100, 151, 289, 468, 613, 619, 802
LmnI	GCTCC	1 cut(s)	305
Lsp1109I	GCAGC	2 cut(s)	66, 124
LweI	GCATC	3 cut(s)	66, 390, 549
MaeI	CTAG	3 cut(s)	203, 333, 509
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	4 cut(s)	29, 90, 169, 779
MalI	GATC	7 cut(s)	102, 153, 291, 470, 615, 621, 804
MboI	GATC	7 cut(s)	100, 151, 289, 468, 613, 619, 802
MboII	GAAGA	4 cut(s)	130, 229, 664, 778
MfeI	CAATTG	1 cut(s)	25
MflI	RGATCY	1 cut(s)	613
MlsI	TGGCCA	1 cut(s)	253
MluCI	AATT	8 cut(s)	9, 25, 70, 222, 486, 708, 754, 787
MluNI	TGGCCA	1 cut(s)	253
MnlI	CCTC	5 cut(s)	141, 352, 382, 414, 744
Mox20I	TGGCCA	1 cut(s)	253
MscI	TGGCCA	1 cut(s)	253
MseI	TTAA	6 cut(s)	191, 411, 569, 674, 704, 785
MslI	CAYNNNNRTG	2 cut(s)	38, 637
Msp20I	TGGCCA	1 cut(s)	253
MunI	CAATTG	1 cut(s)	25
NdeII	GATC	7 cut(s)	100, 151, 289, 468, 613, 619, 802
NlaIII	CATG	3 cut(s)	37, 233, 636
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	4 cut(s)	29, 90, 169, 779
PfeI	GAWTC	3 cut(s)	325, 514, 769
PkrI	GCNGC	3 cut(s)	45, 56, 114
PspEI	GGTNACC	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	2 cut(s)	198, 686
RsaNI	GTAC	2 cut(s)	197, 685
RseI	CAYNNNNRTG	2 cut(s)	38, 637
SaqAI	TTAA	6 cut(s)	191, 411, 569, 674, 704, 785
SatI	GCNGC	3 cut(s)	44, 55, 113
Sau3AI	GATC	7 cut(s)	100, 151, 289, 468, 613, 619, 802
SfaNI	GCATC	3 cut(s)	66, 390, 549
SmiMI	CAYNNNNRTG	2 cut(s)	38, 637
Sse9I	AATT	8 cut(s)	9, 25, 70, 222, 486, 708, 754, 787
SsiI	CCGC	2 cut(s)	43, 322
SspMI	CTAG	3 cut(s)	203, 333, 509
TaaI	ACNGT	1 cut(s)	664
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	801
TasI	AATT	8 cut(s)	9, 25, 70, 222, 486, 708, 754, 787
TatI	WGTACW	1 cut(s)	684
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	3 cut(s)	325, 514, 769
Tru1I	TTAA	6 cut(s)	191, 411, 569, 674, 704, 785
Tru9I	TTAA	6 cut(s)	191, 411, 569, 674, 704, 785
TscAI	CASTG	1 cut(s)	254
TseFI	GTSAC	4 cut(s)	29, 90, 169, 779
TseI	GCWGC	2 cut(s)	54, 112
Tsp45I	GTSAC	4 cut(s)	29, 90, 169, 779
TspDTI	ATGAA	2 cut(s)	64, 218
TspRI	CASTG	1 cut(s)	254
XagI	CCTNNNNNAGG	1 cut(s)	597
XapI	RAATTY	4 cut(s)	70, 486, 708, 787
XbaI	TCTAGA	2 cut(s)	332, 508
XspI	CTAG	3 cut(s)	203, 333, 509
ZraI	GACGTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.