Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000987.1

Orthogroup ID

OG0008427

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5247

Gene Structure 5247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000987.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1649 bp

gacagtatgcccatattaacttctcagagccgaacaacttccttaaagcattgcatagtgtggtcgcagggatgcgagatccagaacttcctgttcgagttgattcagtgtttgctttgcgatcctttgttgaagcttgcagagatttgaatgaaattcgcccaattcttcctcagctacttgatgagtttttcaagcttatgaatgaggttgagaatgaagatctggtttttaccctggagactatagtggacaagtttggggaggaaatggcaccatatgctcttggtttgtgtcaaaatctggcagctgcattctggaggtgtatgaatacagctgaagctgatgatgaagccgatgatcctggtgctttggcagctgttggttgtttgcgtgctattagcaccattttagaatcagtgagcaggctcccacatctctttgtccaagttgaaccaactttgcttcctataatgcgtagaatgttgacaaccgatgggcaagaggtctttgaagaggtgttggaaattgtatcgtatatgacatttttctctccaacaatatctttggatatgtggagtctttggccattgatgatggaagctttagccgattgggctatagatttctttccaaatattctggttcctttggataactacatatcgagggggactgcacactttttatcttgtaaagaaccagactaccagcaaagcctttggaatatgatttcatctattctggcagataggaatatggaagatggtgatattgagcctgctcctaagctcattcaagtactttttcagaattgcagagggcaggttgatcagtgggttgagccatatattagaattacatttgaacggttacgtcgagctgaaaaatcatacttgaaatgtctgcttgttcaagtgattgcagatgctctttactacaatgcagctttgacactcaacatattgcaaaagctgggtatagcgacagatctatttaatctttggttccagatgttgcaagaggttaagaaaagtggcgtacgtgtgcattttagaagggaacatgataaaaaagtttgctgcttgggcttgacatcattactgacactcccagctggacaattacctgcggaggctttgggccgcgttttcagggccaccctcgatctcttagttgcatacaaggatcaagttgcagctgctgcaaaggaggaagaagctgaagatgatgatgatatggatggtttccaaactgatgatgacgatgatggcggggatggatcagacaaggaaatgggagttgatgccgaggatggtgatgaagctgatagccttaaatttcaaaagttagctgcacaggcaaagtgtttccgcccaagtgatgagttcgatgacgactctgatgaagatttcagtgatgatgaggagttacagtcaccaattgacgatgtggatccttttgtcttctttgtagatgcagtcaaatccgtgcaagcatcggatccgcctaggtttcagagtcttacacagacgctagacttccattatcaggcacttgcaaatggtgtagcacagcatgctgaacagaggagagcagagattgaaaaagaaaagatggagaaggcttcagttgccacagcttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008565 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016441 GO:0016458 GO:0017038 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0023052 GO:0031047 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0035194 GO:0035195 GO:0035280 GO:0040029 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0070922 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko04013 map04013

Pfam Domains

Protein Families

Cse1 IBN_N

Protein Analysis

548

Amino Acids

61.86

Weight (kDa)

4.34

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31660 AT3G59020 AT3G59020
fragaria_vesca	FvH4_4g12200
malus_domestica	MD00G1128300.v1.1 MD04G1028800.v1.1
prunus_persica	Prupe.1G180500_v2.0.a1 Prupe.1G180500_v2.0.a1 Prupe.1G180500_v2.0.a1
pyrus_communis	pycom04g02510 pycom04g02520 pycom13g29470
rosa_chinensis	RchiOBHm_Chr4g0409961
rosa_laevigata	RLG00000008510
rosa_multiflora	Rmu_sc0000365.1_g000108 Rmu_sc0000987.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354450
rosa_rugosa	Rorug04G0099700
rosa_samantha	Rh4AG158700 Rh4BG158100 Rh4CG169500 Rh4DG153600
rosa_wichuraiana	Rw4G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	816, 1137
AccB1I	GGYRCC	1 cut(s)	273
AccII	CGCG	1 cut(s)	1148
AciI	CCGC	5 cut(s)	1132, 1146, 1274, 1374, 1507
AclWI	GGATC	9 cut(s)	73, 116, 355, 1196, 1290, 1450, 1463, 1498, 1511
AcoI	YGGCCR	1 cut(s)	586
AcsI	RAATTY	2 cut(s)	155, 1339
AcuI	CTGAAG	3 cut(s)	359, 1244, 1613
AfaI	GTAC	2 cut(s)	803, 1043
AfiI	CCNNNNNNNGG	1 cut(s)	1551
AflIII	ACRYGT	1 cut(s)	1044
AjnI	CCWGG	2 cut(s)	236, 363
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	9 cut(s)	73, 116, 355, 1196, 1290, 1450, 1463, 1498, 1511
AlwNI	CAGNNNCTG	1 cut(s)	1204
AoxI	GGCC	3 cut(s)	586, 1143, 1157
ApeKI	GCWGC	9 cut(s)	307, 310, 376, 946, 1082, 1198, 1201, 1204, 1354
ApoI	RAATTY	2 cut(s)	155, 1339
Asp700I	GAANNNNTTC	1 cut(s)	37
AspA2I	CCTAGG	1 cut(s)	1510
AspS9I	GGNCC	2 cut(s)	1143, 1157
AsuHPI	GGTGA	3 cut(s)	781, 1330, 1430
AvrII	CCTAGG	1 cut(s)	1510
BalI	TGGCCA	1 cut(s)	588
BamHI	GGATCC	2 cut(s)	1455, 1503
BanI	GGYRCC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	1458
BbvCI	CCTCAGC	1 cut(s)	173
BbvI	GCAGC	9 cut(s)	297, 319, 388, 958, 1069, 1188, 1191, 1210, 1341
BccI	CCATC	8 cut(s)	490, 591, 760, 1237, 1264, 1273, 1309, 1611
BciT130I	CCWGG	2 cut(s)	238, 365
BclI	TGATCA	1 cut(s)	831
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	1511, 1537
BfmI	CTRYAG	2 cut(s)	245, 620
BfuAI	ACCTGC	2 cut(s)	816, 1137
BglI	GCCNNNNNGGC	1 cut(s)	616
BglII	AGATCT	2 cut(s)	222, 990
BlnI	CCTAGG	1 cut(s)	1510
BmcAI	AGTACT	1 cut(s)	803
Bme1390I	CCNGG	2 cut(s)	238, 365
BmgT120I	GGNCC	2 cut(s)	1143, 1157
BmiI	GGNNCC	6 cut(s)	275, 430, 647, 1009, 1457, 1505
BmrFI	CCNGG	2 cut(s)	238, 365
BmsI	GCATC	5 cut(s)	62, 918, 1296, 1467, 1507
BpiI	GAAGAC	1 cut(s)	1458
BpmI	CTGGAG	2 cut(s)	259, 339
Bpu10I	CCTNAGC	2 cut(s)	173, 788
BsaAI	YACGTR	1 cut(s)	1045
BsaBI	GATNNNNATC	1 cut(s)	1454
BsaJI	CCNNGG	3 cut(s)	236, 1310, 1510
BsaXI	ACNNNNNCTCC	4 cut(s)	1094, 1124, 1420, 1450
Bsc4I	CCNNNNNNNGG	1 cut(s)	1551
Bse3DI	GCAATG	1 cut(s)	49
Bse8I	GATNNNNATC	1 cut(s)	1454
BseBI	CCWGG	2 cut(s)	238, 365
BseDI	CCNNGG	3 cut(s)	236, 1310, 1510
BseGI	GGATG	4 cut(s)	77, 1248, 1284, 1320
BseJI	GATNNNNATC	1 cut(s)	1454
BseLI	CCNNNNNNNGG	1 cut(s)	1551
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	2 cut(s)	38, 187
BseRI	GAGGAG	2 cut(s)	1441, 1605
BseXI	GCAGC	9 cut(s)	297, 319, 388, 958, 1069, 1188, 1191, 1210, 1341
BseYI	CCCAGC	2 cut(s)	975, 1113
BsgI	GTGCAG	2 cut(s)	662, 1340
Bsh1236I	CGCG	1 cut(s)	1148
BshFI	GGCC	3 cut(s)	588, 1145, 1159
BshNI	GGYRCC	1 cut(s)	273
BsiWI	CGTACG	1 cut(s)	1041
BslFI	GGGAC	1 cut(s)	687
BslI	CCNNNNNNNGG	1 cut(s)	1551
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	687
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	3 cut(s)	588, 1145, 1159
BspACI	CCGC	5 cut(s)	1132, 1146, 1274, 1374, 1507
BspANI	GGCC	3 cut(s)	588, 1145, 1159
BspCNI	CTCAG	2 cut(s)	37, 186
BspFNI	CGCG	1 cut(s)	1148
BspHI	TCATGA	1 cut(s)	1645
BspLI	GGNNCC	6 cut(s)	275, 430, 647, 1009, 1457, 1505
BspMI	ACCTGC	2 cut(s)	816, 1137
BspPI	GGATC	9 cut(s)	73, 116, 355, 1196, 1290, 1450, 1463, 1498, 1511
BspT107I	GGYRCC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	236, 1310, 1510
BssT1I	CCWWGG	1 cut(s)	1510
Bst2UI	CCWGG	2 cut(s)	238, 365
Bst4CI	ACNGT	3 cut(s)	5, 872, 1436
Bst6I	CTCTTC	1 cut(s)	509
BstAPI	GCANNNNNTGC	3 cut(s)	280, 1204, 1579
BstBAI	YACGTR	1 cut(s)	1045
BstC8I	GCNNGC	6 cut(s)	138, 395, 427, 782, 1496, 1580
BstDEI	CTNAG	4 cut(s)	24, 173, 788, 1173
BstF5I	GGATG	4 cut(s)	77, 1248, 1284, 1320
BstFNI	CGCG	1 cut(s)	1148
BstMAI	GTCTC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	8 cut(s)	280, 376, 616, 1088, 1204, 1360, 1579, 1633
BstNI	CCWGG	2 cut(s)	238, 365
BstNSI	RCATGY	1 cut(s)	1582
BstSCI	CCNGG	2 cut(s)	236, 363
BstSFI	CTRYAG	2 cut(s)	245, 620
BstUI	CGCG	1 cut(s)	1148
BstV1I	GCAGC	9 cut(s)	297, 319, 388, 958, 1069, 1188, 1191, 1210, 1341
BstV2I	GAAGAC	1 cut(s)	1458
BstX2I	RGATCY	5 cut(s)	78, 222, 990, 1455, 1503
BstYI	RGATCY	5 cut(s)	78, 222, 990, 1455, 1503
BsuRI	GGCC	3 cut(s)	588, 1145, 1159
BtsCI	GGATG	4 cut(s)	77, 1248, 1284, 1320
BtsIMutI	CAGTG	4 cut(s)	113, 425, 841, 1422
BveI	ACCTGC	2 cut(s)	816, 1137
Cac8I	GCNNGC	6 cut(s)	138, 395, 427, 782, 1496, 1580
CaiI	CAGNNNCTG	1 cut(s)	1204
CciI	TCATGA	1 cut(s)	1645
Cfr13I	GGNCC	2 cut(s)	1143, 1157
CseI	GACGC	1 cut(s)	1542
Csp6I	GTAC	2 cut(s)	802, 1042
CviAII	CATG	3 cut(s)	1066, 1579, 1646
CviQI	GTAC	2 cut(s)	802, 1042
DdeI	CTNAG	4 cut(s)	24, 173, 788, 1173
EaeI	YGGCCR	1 cut(s)	586
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
EciI	GGCGGA	2 cut(s)	1363, 1496
Eco130I	CCWWGG	1 cut(s)	1510
Eco57I	CTGAAG	3 cut(s)	359, 1244, 1613
EcoRII	CCWGG	2 cut(s)	236, 363
EcoT14I	CCWWGG	1 cut(s)	1510
ErhI	CCWWGG	1 cut(s)	1510
FaeI	CATG	3 cut(s)	1069, 1582, 1649
FaqI	GGGAC	1 cut(s)	687
FatI	CATG	3 cut(s)	1065, 1578, 1645
FauI	CCCGC	1 cut(s)	1267
FauNDI	CATATG	1 cut(s)	279
FbaI	TGATCA	1 cut(s)	831
FokI	GGATG	4 cut(s)	84, 1255, 1291, 1327
FspBI	CTAG	2 cut(s)	1511, 1537
GsaI	CCCAGC	2 cut(s)	979, 1117
GsuI	CTGGAG	2 cut(s)	259, 339
HaeIII	GGCC	3 cut(s)	588, 1145, 1159
HgaI	GACGC	1 cut(s)	1542
Hin1II	CATG	3 cut(s)	1069, 1582, 1649
HincII	GTYRAC	1 cut(s)	488
HindII	GTYRAC	1 cut(s)	488
HindIII	AAGCTT	3 cut(s)	134, 196, 602
HinfI	GANTC	5 cut(s)	103, 415, 579, 1399, 1521
HphI	GGTGA	3 cut(s)	781, 1330, 1430
Hpy166II	GTNNAC	2 cut(s)	252, 488
Hpy188I	TCNGA	6 cut(s)	27, 812, 1287, 1404, 1503, 1520
Hpy188III	TCNNGA	4 cut(s)	82, 318, 1011, 1646
Hpy8I	GTNNAC	2 cut(s)	252, 488
Hpy99I	CGWCG	1 cut(s)	881
HpyAV	CCTTC	2 cut(s)	1052, 1617
HpyCH4III	ACNGT	3 cut(s)	5, 872, 1436
HpyCH4IV	ACGT	2 cut(s)	876, 1044
HpyF10VI	GCNNNNNNNGC	8 cut(s)	280, 376, 616, 1088, 1204, 1360, 1579, 1633
HpyF3I	CTNAG	4 cut(s)	24, 173, 788, 1173
HpySE526I	ACGT	2 cut(s)	876, 1044
Hsp92II	CATG	3 cut(s)	1069, 1582, 1649
Ksp22I	TGATCA	1 cut(s)	831
LmnI	GCTCC	2 cut(s)	434, 789
Lsp1109I	GCAGC	9 cut(s)	297, 319, 388, 958, 1069, 1188, 1191, 1210, 1341
LweI	GCATC	5 cut(s)	62, 918, 1296, 1467, 1507
MaeI	CTAG	2 cut(s)	1511, 1537
MaeII	ACGT	2 cut(s)	876, 1044
MaeIII	GTNAC	3 cut(s)	872, 1430, 1436
MboII	GAAGA	8 cut(s)	160, 232, 526, 775, 1228, 1237, 1420, 1458
MfeI	CAATTG	1 cut(s)	1442
MflI	RGATCY	5 cut(s)	78, 222, 990, 1455, 1503
MlsI	TGGCCA	1 cut(s)	588
MluCI	AATT	8 cut(s)	155, 164, 527, 813, 857, 1123, 1339, 1442
MluNI	TGGCCA	1 cut(s)	588
MlyI	GAGTC	3 cut(s)	588, 1393, 1530
MmeI	TCCRAC	2 cut(s)	503, 580
Mox20I	TGGCCA	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	37
MscI	TGGCCA	1 cut(s)	588
MseI	TTAA	5 cut(s)	17, 44, 998, 1028, 1337
Msp20I	TGGCCA	1 cut(s)	588
MspA1I	CMGCKG	5 cut(s)	310, 337, 379, 1117, 1201
MspR9I	CCNGG	2 cut(s)	238, 365
MunI	CAATTG	1 cut(s)	1442
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	2 cut(s)	238, 365
MvnI	CGCG	1 cut(s)	1148
MwoI	GCNNNNNNNGC	8 cut(s)	280, 376, 616, 1088, 1204, 1360, 1579, 1633
NdeI	CATATG	1 cut(s)	279
NlaIII	CATG	3 cut(s)	1069, 1582, 1649
NlaIV	GGNNCC	6 cut(s)	275, 430, 647, 1009, 1457, 1505
NmeAIII	GCCGAG	1 cut(s)	1335
NmuCI	GTSAC	1 cut(s)	1436
NspI	RCATGY	1 cut(s)	1582
PaeI	GCATGC	1 cut(s)	1582
PagI	TCATGA	1 cut(s)	1645
PcsI	WCGNNNNNNNCGW	1 cut(s)	876
PctI	GAATGC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	103, 415
Pfl23II	CGTACG	1 cut(s)	1041
PleI	GAGTC	3 cut(s)	587, 1393, 1529
PpsI	GAGTC	3 cut(s)	587, 1393, 1529
Ppu21I	YACGTR	1 cut(s)	1045
Psp6I	CCWGG	2 cut(s)	236, 363
PspFI	CCCAGC	2 cut(s)	975, 1113
PspGI	CCWGG	2 cut(s)	236, 363
PspLI	CGTACG	1 cut(s)	1041
PspN4I	GGNNCC	6 cut(s)	275, 430, 647, 1009, 1457, 1505
PspPI	GGNCC	2 cut(s)	1143, 1157
PstNI	CAGNNNCTG	1 cut(s)	1204
PsuI	RGATCY	5 cut(s)	78, 222, 990, 1455, 1503
PvuII	CAGCTG	5 cut(s)	310, 337, 379, 1117, 1201
RsaI	GTAC	2 cut(s)	803, 1043
RsaNI	GTAC	2 cut(s)	802, 1042
SaqAI	TTAA	5 cut(s)	17, 44, 998, 1028, 1337
Sau96I	GGNCC	2 cut(s)	1143, 1157
ScaI	AGTACT	1 cut(s)	803
SchI	GAGTC	3 cut(s)	588, 1393, 1530
ScrFI	CCNGG	2 cut(s)	238, 365
SfaNI	GCATC	5 cut(s)	62, 918, 1296, 1467, 1507
SfcI	CTRYAG	2 cut(s)	245, 620
SphI	GCATGC	1 cut(s)	1582
Sse9I	AATT	8 cut(s)	155, 164, 527, 813, 857, 1123, 1339, 1442
SsiI	CCGC	5 cut(s)	1132, 1146, 1274, 1374, 1507
SspI	AATATT	1 cut(s)	639
SspMI	CTAG	2 cut(s)	1511, 1537
StyD4I	CCNGG	2 cut(s)	236, 363
StyI	CCWWGG	1 cut(s)	1510
TaaI	ACNGT	3 cut(s)	5, 872, 1436
TaiI	ACGT	2 cut(s)	879, 1047
TaqI	TCGA	5 cut(s)	96, 667, 879, 1166, 1391
TasI	AATT	8 cut(s)	155, 164, 527, 813, 857, 1123, 1339, 1442
TatI	WGTACW	1 cut(s)	801
TauI	GCSGC	1 cut(s)	1148
TfiI	GAWTC	2 cut(s)	103, 415
Tru1I	TTAA	5 cut(s)	17, 44, 998, 1028, 1337
Tru9I	TTAA	5 cut(s)	17, 44, 998, 1028, 1337
TscAI	CASTG	4 cut(s)	113, 425, 841, 1422
TseFI	GTSAC	1 cut(s)	1436
TseI	GCWGC	9 cut(s)	307, 310, 376, 946, 1082, 1198, 1201, 1204, 1354
Tsp45I	GTSAC	1 cut(s)	1436
TspDTI	ATGAA	9 cut(s)	167, 217, 233, 343, 365, 725, 1337, 1421, 1634
TspGWI	ACGGA	1 cut(s)	1479
TspRI	CASTG	4 cut(s)	113, 425, 841, 1422
XapI	RAATTY	2 cut(s)	155, 1339
XceI	RCATGY	1 cut(s)	1582
XmaJI	CCTAGG	1 cut(s)	1510
XmnI	GAANNNNTTC	1 cut(s)	37
XspI	CTAG	2 cut(s)	1511, 1537
ZrmI	AGTACT	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.