Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0008427

Physical Location & Seq

Genomic Coordinates Forward (+)

2249031 .. 2253769

Gene Structure 4739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGCGCAGGATGTTGACAACTGATGGCCAAGAGGTTTTTGAAGAAGTGTTGGAAATTGTTTCATATATGACATTTTTCTCACCAACAATATCTTTAGATATGTGGAGTCTCTGGCCATTGATGATGGAAGCATTGGCAGAATGGGCTATTGATTTCTTTCCAAATATTCTGGTTCCTTTGGATAACTACATATCCAGGGGGACAGCACAGTTCCTCACTTGTAAAGAACCAGACTACCAGCAAAGCCTTTGGAATATGATTGCAGCTATCATGGCAGATAAAAATATGGAAGACGGTGATATTGAGCCTGCTCCAAAGCTCATTCAAGTAGTTTTTCAGAACTGCAGAGGGCAGGTTGATCAATCGGTTGAACCATACCTTAGAATTACAGTTGAGCGGTTACGCCGATCTGAGAAGCCGTACTTGAAATGCCTTCTCATTGAAGTTATTGCGGATGCACTGTACTATAATGCAGCTTTGGCGCTCAGCATATTGCAGAACCTGGGTGTTGCAACAGAGATCTTTAATCTTTGGTTCCAGATGCTGCAACAGGTCAAGAAAAGTGGTGTGCGTGCAAATTTTAAGAGGGAGCATGACAAAAAAGTATGCTGTCTGGGTTTGACATCATTAATGATACTCCCAGCTGAACAGTTGCCTGGGGAGGCATTGGGCCGTGTTTTCAGGGCTGCCCTTGATCTCCTAGTTGCGTACAAGGAACAAGTTGCAGAAGCTGCAAAGGAGGAAGAACCAGAAGATGACGATGAAATGGATGGTTTCCCAACTGATGATGATGATGAATATGGTGATGGATCTGACAAGGAAATGGGACTTGATGCCGAGGATGGTGATGAAGTTGATAGCGTTAAACTTCAAAAGTTAGCTGCACAGGCAAAGTCTTTCCGCCCTAGTGATGAATATGACTCAGACTCGGACGATGATTTCAGTGATGATGAGGAATTACAGTCACCAATTGATGATGTGGACCCTTTTATCTTTTTTGTTGATGCAGTCAAAGCCATGCAAGCATCAGATCCGTTGAGAGTTCACAGCCTTATGCAGACTCTGGACTTCCAGTATCAGGCTCTTGCAAATGGGGTTGCACAGCATGCTGAACAGAGGAGAGCAGAGATTGAAAAAGAGAAGATGGAGAAGGCAGCAGCTGCCACAGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008565 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016441 GO:0016458 GO:0017038 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0023052 GO:0031047 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0035194 GO:0035195 GO:0035280 GO:0040029 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0070922 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko04013 map04013

Pfam Domains

Protein Families

Cse1 IBN_N

Protein Analysis

392

Amino Acids

44.24

Weight (kDa)

4.27

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_IPO11	PF25758	27 - 292	5.3e-08	Importin-11-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31660 AT3G59020 AT3G59020
fragaria_vesca	FvH4_4g12200
malus_domestica	MD00G1128300.v1.1 MD04G1028800.v1.1
prunus_persica	Prupe.1G180500_v2.0.a1 Prupe.1G180500_v2.0.a1 Prupe.1G180500_v2.0.a1
pyrus_communis	pycom04g02510 pycom04g02520 pycom13g29470
rosa_chinensis	RchiOBHm_Chr4g0409961
rosa_laevigata	RLG00000008510
rosa_multiflora	Rmu_sc0000365.1_g000108 Rmu_sc0000987.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354450
rosa_rugosa	Rorug04G0099700
rosa_samantha	Rh4AG158700 Rh4BG158100 Rh4CG169500 Rh4DG153600
rosa_wichuraiana	Rw4G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	343
AccBSI	CCGCTC	1 cut(s)	397
AciI	CCGC	3 cut(s)	397, 452, 901
AclWI	GGATC	2 cut(s)	817, 1025
AcoI	YGGCCR	2 cut(s)	25, 113
AcsI	RAATTY	1 cut(s)	577
AfaI	GTAC	3 cut(s)	422, 464, 710
AfiI	CCNNNNNNNGG	1 cut(s)	1078
AgsI	TTSAA	7 cut(s)	41, 326, 371, 427, 443, 872, 1133
AjnI	CCWGG	3 cut(s)	194, 501, 655
AluBI	AGCT	8 cut(s)	266, 319, 476, 644, 731, 881, 1160, 1169
AluI	AGCT	8 cut(s)	266, 319, 476, 644, 731, 881, 1160, 1169
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	2 cut(s)	817, 1025
AlwNI	CAGNNNCTG	5 cut(s)	502, 544, 731, 1063, 1160
AoxI	GGCC	3 cut(s)	25, 113, 670
ApeKI	GCWGC	9 cut(s)	263, 473, 544, 686, 731, 881, 1154, 1157, 1160
ApoI	RAATTY	1 cut(s)	577
AseI	ATTAAT	1 cut(s)	629
AspLEI	GCGC	2 cut(s)	6, 484
AspS9I	GGNCC	2 cut(s)	670, 982
AsuHPI	GGTGA	5 cut(s)	72, 308, 815, 857, 957
AvaII	GGWCC	1 cut(s)	982
BalI	TGGCCA	2 cut(s)	27, 115
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	9 cut(s)	275, 485, 531, 673, 718, 868, 1147, 1166, 1169
BccI	CCATC	6 cut(s)	17, 118, 764, 800, 836, 1138
BceAI	ACGGC	2 cut(s)	403, 657
BciT130I	CCWGG	3 cut(s)	196, 503, 657
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	701, 906
BfmI	CTRYAG	1 cut(s)	343
BfoI	RGCGCY	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	343
BglII	AGATCT	1 cut(s)	519
BisI	GCNGC	9 cut(s)	264, 474, 545, 687, 732, 882, 1155, 1158, 1161
BlpI	GCTNAGC	1 cut(s)	485
BlsI	GCNGC	9 cut(s)	265, 475, 546, 688, 733, 883, 1156, 1159, 1162
Bme1390I	CCNGG	3 cut(s)	196, 503, 657
Bme18I	GGWCC	1 cut(s)	982
BmgT120I	GGNCC	2 cut(s)	670, 982
BmiI	GGNNCC	3 cut(s)	174, 536, 984
BmrFI	CCNGG	3 cut(s)	196, 503, 657
BmsI	GCATC	5 cut(s)	445, 531, 823, 994, 1034
BpiI	GAAGAC	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	485
BsaJI	CCNNGG	4 cut(s)	195, 502, 656, 837
Bsc4I	CCNNNNNNNGG	1 cut(s)	1078
Bse1I	ACTGG	1 cut(s)	1072
BseBI	CCWGG	3 cut(s)	196, 503, 657
BseDI	CCNNGG	4 cut(s)	195, 502, 656, 837
BseGI	GGATG	4 cut(s)	15, 460, 775, 847
BseLI	CCNNNNNNNGG	1 cut(s)	1078
BseMII	CTCAG	3 cut(s)	402, 499, 936
BseNI	ACTGG	1 cut(s)	1072
BseRI	GAGGAG	1 cut(s)	1132
BseXI	GCAGC	9 cut(s)	275, 485, 531, 673, 718, 868, 1147, 1166, 1169
BseYI	CCCAGC	1 cut(s)	640
BsgI	GTGCAG	1 cut(s)	867
BshFI	GGCC	3 cut(s)	27, 115, 672
BslFI	GGGAC	2 cut(s)	214, 840
BslI	CCNNNNNNNGG	1 cut(s)	1078
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	214, 840
BsnI	GGCC	3 cut(s)	27, 115, 672
Bsp143I	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
Bsp1720I	GCTNAGC	1 cut(s)	485
BspACI	CCGC	3 cut(s)	397, 452, 901
BspANI	GGCC	3 cut(s)	27, 115, 672
BspCNI	CTCAG	3 cut(s)	403, 498, 935
BspHI	TCATGA	1 cut(s)	1172
BspLI	GGNNCC	3 cut(s)	174, 536, 984
BspMAI	CTGCAG	1 cut(s)	347
BspMI	ACCTGC	1 cut(s)	343
BspPI	GGATC	2 cut(s)	817, 1025
BsrBI	CCGCTC	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	1072
BssECI	CCNNGG	4 cut(s)	195, 502, 656, 837
BssMI	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
Bst2UI	CCWGG	3 cut(s)	196, 503, 657
Bst4CI	ACNGT	6 cut(s)	210, 296, 391, 462, 651, 963
BstAPI	GCANNNNNTGC	3 cut(s)	731, 1106, 1160
BstC8I	GCNNGC	4 cut(s)	309, 573, 1023, 1107
BstDEI	CTNAG	4 cut(s)	380, 411, 485, 922
BstF5I	GGATG	4 cut(s)	15, 460, 775, 847
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	2 cut(s)	6, 484
BstKTI	GATC	6 cut(s)	361, 410, 522, 697, 812, 1033
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
BstNI	CCWGG	3 cut(s)	196, 503, 657
BstNSI	RCATGY	1 cut(s)	1109
BstSCI	CCNGG	3 cut(s)	194, 501, 655
BstSFI	CTRYAG	1 cut(s)	343
BstV1I	GCAGC	9 cut(s)	275, 485, 531, 673, 718, 868, 1147, 1166, 1169
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	3 cut(s)	519, 809, 1030
BstYI	RGATCY	3 cut(s)	519, 809, 1030
BsuRI	GGCC	3 cut(s)	27, 115, 672
BtsCI	GGATG	4 cut(s)	15, 460, 775, 847
BtsIMutI	CAGTG	2 cut(s)	458, 949
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	4 cut(s)	309, 573, 1023, 1107
CaiI	CAGNNNCTG	5 cut(s)	502, 544, 731, 1063, 1160
CciI	TCATGA	1 cut(s)	1172
CfoI	GCGC	2 cut(s)	6, 484
Cfr13I	GGNCC	2 cut(s)	670, 982
Csp6I	GTAC	3 cut(s)	421, 463, 709
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviAII	CATG	5 cut(s)	271, 593, 1018, 1106, 1173
CviQI	GTAC	3 cut(s)	421, 463, 709
DdeI	CTNAG	4 cut(s)	380, 411, 485, 922
DpnI	GATC	6 cut(s)	360, 409, 521, 696, 811, 1032
DpnII	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
EaeI	YGGCCR	2 cut(s)	25, 113
EciI	GGCGGA	1 cut(s)	890
Eco47I	GGWCC	1 cut(s)	982
EcoRII	CCWGG	3 cut(s)	194, 501, 655
FaeI	CATG	5 cut(s)	274, 596, 1021, 1109, 1176
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	2 cut(s)	214, 840
FatI	CATG	5 cut(s)	270, 592, 1017, 1105, 1172
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	9 cut(s)	264, 474, 545, 687, 732, 882, 1155, 1158, 1161
FokI	GGATG	4 cut(s)	22, 467, 782, 854
Fsp4HI	GCNGC	9 cut(s)	264, 474, 545, 687, 732, 882, 1155, 1158, 1161
FspBI	CTAG	2 cut(s)	701, 906
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 483
GluI	GCNGC	9 cut(s)	264, 474, 545, 687, 732, 882, 1155, 1158, 1161
GsaI	CCCAGC	1 cut(s)	644
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	3 cut(s)	27, 115, 672
HhaI	GCGC	2 cut(s)	6, 484
Hin1II	CATG	5 cut(s)	274, 596, 1021, 1109, 1176
Hin6I	GCGC	2 cut(s)	4, 482
HinP1I	GCGC	2 cut(s)	4, 482
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	4 cut(s)	106, 920, 926, 1060
HphI	GGTGA	5 cut(s)	72, 308, 815, 857, 957
Hpy166II	GTNNAC	3 cut(s)	15, 982, 1045
Hpy188I	TCNGA	6 cut(s)	339, 412, 814, 925, 931, 1030
Hpy188III	TCNNGA	4 cut(s)	538, 556, 1064, 1173
Hpy8I	GTNNAC	3 cut(s)	15, 982, 1045
HpyAV	CCTTC	2 cut(s)	443, 1144
HpyCH4III	ACNGT	6 cut(s)	210, 296, 391, 462, 651, 963
HpyF3I	CTNAG	4 cut(s)	380, 411, 485, 922
Hsp92II	CATG	5 cut(s)	274, 596, 1021, 1109, 1176
HspAI	GCGC	2 cut(s)	4, 482
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
LmnI	GCTCC	2 cut(s)	316, 589
Lsp1109I	GCAGC	9 cut(s)	275, 485, 531, 673, 718, 868, 1147, 1166, 1169
LweI	GCATC	5 cut(s)	445, 531, 823, 994, 1034
MaeI	CTAG	2 cut(s)	701, 906
MaeIII	GTNAC	2 cut(s)	399, 963
MalI	GATC	6 cut(s)	360, 409, 521, 696, 811, 1032
MbiI	CCGCTC	1 cut(s)	397
MboI	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
MboII	GAAGA	5 cut(s)	53, 302, 755, 764, 1153
MfeI	CAATTG	1 cut(s)	969
MflI	RGATCY	3 cut(s)	519, 809, 1030
MlsI	TGGCCA	2 cut(s)	27, 115
MluCI	AATT	5 cut(s)	54, 384, 577, 956, 969
MluNI	TGGCCA	2 cut(s)	27, 115
MlyI	GAGTC	4 cut(s)	115, 914, 920, 1054
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	9 cut(s)	25, 224, 341, 579, 655, 733, 832, 946, 1110
Mox20I	TGGCCA	2 cut(s)	27, 115
MscI	TGGCCA	2 cut(s)	27, 115
MseI	TTAA	4 cut(s)	525, 582, 629, 864
Msp20I	TGGCCA	2 cut(s)	27, 115
MspA1I	CMGCKG	2 cut(s)	644, 1160
MspR9I	CCNGG	3 cut(s)	196, 503, 657
MunI	CAATTG	1 cut(s)	969
MvaI	CCWGG	3 cut(s)	196, 503, 657
NdeII	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
NlaIII	CATG	5 cut(s)	274, 596, 1021, 1109, 1176
NlaIV	GGNNCC	3 cut(s)	174, 536, 984
NmeAIII	GCCGAG	1 cut(s)	862
NmuCI	GTSAC	1 cut(s)	963
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	1 cut(s)	1109
PaeI	GCATGC	1 cut(s)	1109
PagI	TCATGA	1 cut(s)	1172
PkrI	GCNGC	9 cut(s)	265, 475, 546, 688, 733, 883, 1156, 1159, 1162
PleI	GAGTC	4 cut(s)	114, 914, 920, 1054
PpsI	GAGTC	4 cut(s)	114, 914, 920, 1054
PshBI	ATTAAT	1 cut(s)	629
Psp6I	CCWGG	3 cut(s)	194, 501, 655
PspFI	CCCAGC	1 cut(s)	640
PspGI	CCWGG	3 cut(s)	194, 501, 655
PspN4I	GGNNCC	3 cut(s)	174, 536, 984
PspPI	GGNCC	2 cut(s)	670, 982
PstI	CTGCAG	1 cut(s)	347
PstNI	CAGNNNCTG	5 cut(s)	502, 544, 731, 1063, 1160
PsuI	RGATCY	3 cut(s)	519, 809, 1030
PvuII	CAGCTG	2 cut(s)	644, 1160
RsaI	GTAC	3 cut(s)	422, 464, 710
RsaNI	GTAC	3 cut(s)	421, 463, 709
SaqAI	TTAA	4 cut(s)	525, 582, 629, 864
SatI	GCNGC	9 cut(s)	264, 474, 545, 687, 732, 882, 1155, 1158, 1161
Sau3AI	GATC	6 cut(s)	358, 407, 519, 694, 809, 1030
Sau96I	GGNCC	2 cut(s)	670, 982
SchI	GAGTC	4 cut(s)	115, 914, 920, 1054
ScrFI	CCNGG	3 cut(s)	196, 503, 657
SfaNI	GCATC	5 cut(s)	445, 531, 823, 994, 1034
SfcI	CTRYAG	1 cut(s)	343
SinI	GGWCC	1 cut(s)	982
SphI	GCATGC	1 cut(s)	1109
Sse9I	AATT	5 cut(s)	54, 384, 577, 956, 969
SsiI	CCGC	3 cut(s)	397, 452, 901
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	2 cut(s)	701, 906
StyD4I	CCNGG	3 cut(s)	194, 501, 655
TaaI	ACNGT	6 cut(s)	210, 296, 391, 462, 651, 963
TasI	AATT	5 cut(s)	54, 384, 577, 956, 969
TatI	WGTACW	1 cut(s)	462
Tru1I	TTAA	4 cut(s)	525, 582, 629, 864
Tru9I	TTAA	4 cut(s)	525, 582, 629, 864
TscAI	CASTG	2 cut(s)	465, 949
TseFI	GTSAC	1 cut(s)	963
TseI	GCWGC	9 cut(s)	263, 473, 544, 686, 731, 881, 1154, 1157, 1160
Tsp45I	GTSAC	1 cut(s)	963
TspDTI	ATGAA	6 cut(s)	51, 777, 810, 864, 927, 1161
TspGWI	ACGGA	1 cut(s)	1023
TspRI	CASTG	2 cut(s)	465, 949
VpaK11BI	GGWCC	1 cut(s)	982
VspI	ATTAAT	1 cut(s)	629
XapI	RAATTY	1 cut(s)	577
XceI	RCATGY	1 cut(s)	1109
XspI	CTAG	2 cut(s)	701, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.