Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003433

Physical Location & Seq

Genomic Coordinates Forward (+)

2419388 .. 2420516

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02690.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCATGTCTATACATATGGGGCCCTTCCATGTGTGGACTCAGTTGTAGCAAATGCATGTTCTGAATTTGTTACAAGCATTGTATACAACAATGAATTCTCAGCACGCTTATCAGTTGGATCAATCATGCGGCTTCGTGCAGCTGCAATTACATCAATGTCACAAGATTCAGAAACTGATACGGCTATGATATTAAGGCTTGCGCGCCATTTCCTTCATGTAAACAAGTGCCAGCAAGATGGGACTGACGTAAAGGATTCATCTTCAGTTGAAAAACTAAACCACCAAATATATGAAAATCAGTATGAGGATGATGTGGCAGCTTGTCAGGAACAGCATCAAGATTTCATCCTGTGGAATGATGCTGACATGGAGGAAAGAGTTCTTGAAAGTGATCAAGATCAATTCACCAACCCTTTTGCTAGTGACGTTATTTCAGACCATGACCCTGTGTCCCAATTTATGGAAAGTGTCCCAAAATCTGGAAGTTTGACAGCTAGGGATCCCCCGGAGATGTATCTGCCAGGCCTTGTAATTCATATAGTACCACAACCAAGAAGATTCAATATGTCTCCATCTAAAAGCCAGAGAGTTCACGAAAAGACACACTGTCATAAGGCTTATGTTGCAAACAGAGAAAGCTTCAAAGATATTATTGTGTCACCATCAATGTTTCTTGACCATCTTCCTTGGAGATGTCACGATGCAATGAAAAAGTTGTTGCAAGCTCAAAGTTCCCAGGTCCAAAGTTCAACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0007275 GO:0007399 GO:0007405 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009987 GO:0016020 GO:0019369 GO:0019752 GO:0022008 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044464 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0061351 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072089 GO:1901568

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

254

Amino Acids

28.67

Weight (kDa)

5.37

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05790 AT1G05790 AT1G05790 AT1G05790
fragaria_vesca	FvH4_4g11690 FvH4_4g11690 FvH4_4g11690 FvH4_4g11690 FvH4_4g11690 FvH4_4g11690 FvH4_4g11690 FvH4_4g11690 FvH4_4g11690 FvH4_4g11690
malus_domestica	MD04G1032500.v1.1 MD04G1032600.v1.1
prunus_persica	Prupe.1G181900_v2.0.a1 Prupe.1G181900_v2.0.a1 Prupe.1G181900_v2.0.a1 Prupe.1G181900_v2.0.a1 Prupe.1G181900_v2.0.a1 Prupe.1G181900_v2.0.a1 Prupe.1G181900_v2.0.a1
pyrus_communis	pycom04g02680 pycom04g02690
rosa_chinensis	RchiOBHm_Chr4g0408981
rosa_laevigata	RLG00000008601
rosa_multiflora	Rmu_sc0003685.1_g000003 Rmu_sc0031886.1_g000002
rosa_roxburghii	Rroxscaffold_5G00353410
rosa_rugosa	Rorug04G0088900 Rorug04G0088900
rosa_samantha	Rh4AG153000 Rh4BG150900 Rh4CG161400 Rh4DG146400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	463, 482
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	205
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	3 cut(s)	127, 497, 510
AcsI	RAATTY	2 cut(s)	65, 95
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	1 cut(s)	546
AfiI	CCNNNNNNNGG	2 cut(s)	463, 482
AgsI	TTSAA	5 cut(s)	272, 389, 565, 646, 753
AhdI	GACNNNNNGTC	2 cut(s)	451, 609
AjnI	CCWGG	2 cut(s)	523, 738
AluBI	AGCT	5 cut(s)	143, 323, 497, 642, 728
AluI	AGCT	5 cut(s)	143, 323, 497, 642, 728
Alw26I	GTCTC	1 cut(s)	576
AlwI	GGATC	3 cut(s)	127, 497, 510
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	2 cut(s)	21, 526
ApaI	GGGCCC	1 cut(s)	25
ApeKI	GCWGC	3 cut(s)	140, 143, 320
ApoI	RAATTY	2 cut(s)	65, 95
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	2 cut(s)	205, 207
AspS9I	GGNCC	3 cut(s)	21, 22, 742
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	400, 654
AvaII	GGWCC	1 cut(s)	742
BaeGI	GKGCMC	1 cut(s)	25
BamHI	GGATCC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	25
BbvI	GCAGC	3 cut(s)	130, 152, 332
BccI	CCATC	4 cut(s)	233, 583, 673, 690
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	2 cut(s)	525, 740
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	576
BfaI	CTAG	2 cut(s)	423, 498
BisI	GCNGC	4 cut(s)	131, 141, 144, 321
BlsI	GCNGC	4 cut(s)	132, 142, 145, 322
Bme1390I	CCNGG	3 cut(s)	509, 525, 740
Bme18I	GGWCC	1 cut(s)	742
BmeRI	GACNNNNNGTC	2 cut(s)	451, 609
BmgT120I	GGNCC	3 cut(s)	21, 22, 742
BmiI	GGNNCC	3 cut(s)	22, 23, 504
BmrFI	CCNGG	3 cut(s)	509, 525, 740
BmsI	GCATC	3 cut(s)	346, 352, 694
BpuMI	CCSGG	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	3 cut(s)	507, 689, 738
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 482
Bse3DI	GCAATG	1 cut(s)	714
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	2 cut(s)	525, 740
BseDI	CCNNGG	3 cut(s)	507, 689, 738
BseGI	GGATG	2 cut(s)	316, 348
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	463, 482
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	2 cut(s)	54, 114
BsePI	GCGCGC	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	25
BseXI	GCAGC	3 cut(s)	130, 152, 332
BsgI	GTGCAG	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	2 cut(s)	23, 528
BsiSI	CCGG	1 cut(s)	509
BslFI	GGGAC	3 cut(s)	256, 439, 458
BslI	CCNNNNNNNGG	2 cut(s)	463, 482
BsmAI	GTCTC	1 cut(s)	576
BsmFI	GGGAC	3 cut(s)	256, 439, 458
BsnI	GGCC	2 cut(s)	23, 528
Bsp120I	GGGCCC	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	4 cut(s)	119, 394, 400, 502
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	2 cut(s)	23, 528
BspCNI	CTCAG	2 cut(s)	53, 113
BspFNI	CGCG	1 cut(s)	205
BspLI	GGNNCC	3 cut(s)	22, 23, 504
BspPI	GGATC	3 cut(s)	127, 497, 510
BsrDI	GCAATG	1 cut(s)	714
BssECI	CCNNGG	3 cut(s)	507, 689, 738
BssHII	GCGCGC	1 cut(s)	203
BssMI	GATC	4 cut(s)	119, 394, 400, 502
BssNAI	GTATAC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	689
Bst1107I	GTATAC	1 cut(s)	85
Bst2UI	CCWGG	2 cut(s)	525, 740
Bst4CI	ACNGT	2 cut(s)	611, 757
BstC8I	GCNNGC	5 cut(s)	106, 201, 205, 233, 726
BstDEI	CTNAG	2 cut(s)	40, 100
BstF5I	GGATG	2 cut(s)	316, 348
BstFNI	CGCG	1 cut(s)	205
BstHHI	GCGC	2 cut(s)	205, 207
BstKTI	GATC	4 cut(s)	122, 397, 403, 505
BstMAI	GTCTC	1 cut(s)	576
BstMBI	GATC	4 cut(s)	119, 394, 400, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	626
BstNI	CCWGG	2 cut(s)	525, 740
BstNSI	RCATGY	2 cut(s)	8, 60
BstSCI	CCNGG	3 cut(s)	507, 523, 738
BstSLI	GKGCMC	1 cut(s)	25
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	3 cut(s)	130, 152, 332
BstX2I	RGATCY	1 cut(s)	502
BstXI	CCANNNNNNTGG	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	502
BstZ17I	GTATAC	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	23, 528
BtsCI	GGATG	2 cut(s)	316, 348
BtsIMutI	CAGTG	1 cut(s)	607
Cac8I	GCNNGC	5 cut(s)	106, 201, 205, 233, 726
CaiI	CAGNNNCTG	1 cut(s)	176
CfoI	GCGC	2 cut(s)	205, 207
Cfr13I	GGNCC	3 cut(s)	21, 22, 742
Csp6I	GTAC	1 cut(s)	545
CviAII	CATG	7 cut(s)	5, 30, 57, 127, 218, 370, 443
CviQI	GTAC	1 cut(s)	545
DdeI	CTNAG	2 cut(s)	40, 100
DpnI	GATC	4 cut(s)	121, 396, 402, 504
DpnII	GATC	4 cut(s)	119, 394, 400, 502
DriI	GACNNNNNGTC	2 cut(s)	451, 609
Eam1105I	GACNNNNNGTC	2 cut(s)	451, 609
Eco130I	CCWWGG	1 cut(s)	689
Eco147I	AGGCCT	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	742
Eco57I	CTGAAG	1 cut(s)	249
EcoO109I	RGGNCCY	2 cut(s)	21, 22
EcoRI	GAATTC	1 cut(s)	95
EcoRII	CCWGG	2 cut(s)	523, 738
EcoT14I	CCWWGG	1 cut(s)	689
EcoT22I	ATGCAT	2 cut(s)	6, 58
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	689
FaeI	CATG	7 cut(s)	8, 33, 60, 130, 221, 373, 446
FaqI	GGGAC	3 cut(s)	256, 439, 458
FatI	CATG	7 cut(s)	4, 29, 56, 126, 217, 369, 442
FauNDI	CATATG	1 cut(s)	16
FbaI	TGATCA	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	131, 141, 144, 321
FokI	GGATG	2 cut(s)	323, 335
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	4 cut(s)	131, 141, 144, 321
FspBI	CTAG	2 cut(s)	423, 498
GlaI	GCGC	2 cut(s)	204, 206
GluI	GCNGC	4 cut(s)	131, 141, 144, 321
HaeIII	GGCC	2 cut(s)	23, 528
HapII	CCGG	1 cut(s)	509
HhaI	GCGC	2 cut(s)	205, 207
Hin1II	CATG	7 cut(s)	8, 33, 60, 130, 221, 373, 446
Hin6I	GCGC	2 cut(s)	203, 205
HinP1I	GCGC	2 cut(s)	203, 205
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	4 cut(s)	38, 167, 257, 561
HpaII	CCGG	1 cut(s)	509
HphI	GGTGA	2 cut(s)	400, 654
Hpy166II	GTNNAC	4 cut(s)	37, 85, 223, 595
Hpy188I	TCNGA	3 cut(s)	64, 172, 439
Hpy188III	TCNNGA	8 cut(s)	329, 341, 386, 398, 483, 596, 677, 701
Hpy8I	GTNNAC	4 cut(s)	37, 85, 223, 595
HpyAV	CCTTC	2 cut(s)	35, 224
HpyCH4III	ACNGT	2 cut(s)	611, 757
HpyCH4IV	ACGT	2 cut(s)	249, 429
HpyCH4V	TGCA	7 cut(s)	4, 56, 140, 146, 629, 707, 724
HpyF10VI	GCNNNNNNNGC	1 cut(s)	626
HpyF3I	CTNAG	2 cut(s)	40, 100
HpySE526I	ACGT	2 cut(s)	249, 429
Hsp92II	CATG	7 cut(s)	8, 33, 60, 130, 221, 373, 446
HspAI	GCGC	2 cut(s)	203, 205
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	119, 394, 400, 502
Lsp1109I	GCAGC	3 cut(s)	130, 152, 332
LweI	GCATC	3 cut(s)	346, 352, 694
MaeI	CTAG	2 cut(s)	423, 498
MaeII	ACGT	2 cut(s)	249, 429
MaeIII	GTNAC	5 cut(s)	70, 159, 425, 660, 698
MalI	GATC	4 cut(s)	121, 396, 402, 504
MboI	GATC	4 cut(s)	119, 394, 400, 502
MboII	GAAGA	3 cut(s)	255, 570, 677
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	6 cut(s)	65, 95, 147, 404, 458, 534
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	2 cut(s)	301, 367
Mph1103I	ATGCAT	2 cut(s)	6, 58
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	509
MspR9I	CCNGG	3 cut(s)	509, 525, 740
MvaI	CCWGG	2 cut(s)	525, 740
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	626
NciI	CCSGG	1 cut(s)	509
NdeI	CATATG	1 cut(s)	16
NdeII	GATC	4 cut(s)	119, 394, 400, 502
NlaIII	CATG	7 cut(s)	8, 33, 60, 130, 221, 373, 446
NlaIV	GGNNCC	3 cut(s)	22, 23, 504
NmuCI	GTSAC	4 cut(s)	159, 425, 660, 698
NsiI	ATGCAT	2 cut(s)	6, 58
NspI	RCATGY	2 cut(s)	8, 60
PauI	GCGCGC	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	528
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	3 cut(s)	167, 257, 561
PflMI	CCANNNNNTGG	2 cut(s)	463, 482
PkrI	GCNGC	4 cut(s)	132, 142, 145, 322
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	523, 738
PspGI	CCWGG	2 cut(s)	523, 738
PspN4I	GGNNCC	3 cut(s)	22, 23, 504
PspOMI	GGGCCC	1 cut(s)	21
PspPI	GGNCC	3 cut(s)	21, 22, 742
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	502
PteI	GCGCGC	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	546
RsaNI	GTAC	1 cut(s)	545
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	4 cut(s)	131, 141, 144, 321
Sau3AI	GATC	4 cut(s)	119, 394, 400, 502
Sau96I	GGNCC	3 cut(s)	21, 22, 742
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	3 cut(s)	509, 525, 740
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	8 cut(s)	145, 252, 325, 432, 499, 644, 730, 744
SfaNI	GCATC	3 cut(s)	346, 352, 694
SinI	GGWCC	1 cut(s)	742
Sse9I	AATT	6 cut(s)	65, 95, 147, 404, 458, 534
SseBI	AGGCCT	1 cut(s)	528
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	2 cut(s)	423, 498
StuI	AGGCCT	1 cut(s)	528
StyD4I	CCNGG	3 cut(s)	507, 523, 738
StyI	CCWWGG	1 cut(s)	689
TaaI	ACNGT	2 cut(s)	611, 757
TaiI	ACGT	2 cut(s)	252, 432
TasI	AATT	6 cut(s)	65, 95, 147, 404, 458, 534
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	3 cut(s)	167, 257, 561
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	1 cut(s)	614
TseFI	GTSAC	4 cut(s)	159, 425, 660, 698
TseI	GCWGC	3 cut(s)	140, 143, 320
Tsp45I	GTSAC	4 cut(s)	159, 425, 660, 698
TspDTI	ATGAA	7 cut(s)	108, 206, 249, 309, 337, 527, 725
TspRI	CASTG	1 cut(s)	614
Van91I	CCANNNNNTGG	2 cut(s)	463, 482
VpaK11BI	GGWCC	1 cut(s)	742
XapI	RAATTY	2 cut(s)	65, 95
XceI	RCATGY	2 cut(s)	8, 60
XmiI	GTMKAC	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	2 cut(s)	423, 498
Zsp2I	ATGCAT	2 cut(s)	6, 58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.