Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031886.1

Orthogroup ID

OG0003433

Physical Location & Seq

Genomic Coordinates Reverse (-)

2569 .. 3291

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031886.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 488 bp

atgccatttctggggcaatcactgccgagaagcttagccaccaaatatgcggacctcagtttgatataaaagcaagtgaggaacaagatgagggtttccttgcgtgcaaggatgctcgcacaggtgaaacagattttggagctgataacgatcaatttactaaccctttcgccagtgatgccattgcaaatcatgatcctgtgtctgagtttatggaaagtgtccccagatctgatagtgtgtcacctaccgatccccctgagatgtatttgccaggccttgtaattcatatagtagcacagccgaggaacatagatatgcctatttggaaaggcttgggagtccacgagaagacacagtctcacaaagcttatattgcagacagagaaagtttcaaagatatgattgtgtcaccatcaatgtttctcgaccatcttccttggagatgtcacgatgcaatgctaaaattattgcaagctcggagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0007275 GO:0007399 GO:0007405 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009987 GO:0016020 GO:0019369 GO:0019752 GO:0022008 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044464 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0061351 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072089 GO:1901568

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

161

Amino Acids

17.87

Weight (kDa)

4.9

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05790 AT1G05790 AT1G05790 AT1G05790
fragaria_vesca	FvH4_4g11690 FvH4_4g11690 FvH4_4g11690 FvH4_4g11690 FvH4_4g11690 FvH4_4g11690 FvH4_4g11690 FvH4_4g11690 FvH4_4g11690 FvH4_4g11690
malus_domestica	MD04G1032500.v1.1 MD04G1032600.v1.1
prunus_persica	Prupe.1G181900_v2.0.a1 Prupe.1G181900_v2.0.a1 Prupe.1G181900_v2.0.a1 Prupe.1G181900_v2.0.a1 Prupe.1G181900_v2.0.a1 Prupe.1G181900_v2.0.a1 Prupe.1G181900_v2.0.a1
pyrus_communis	pycom04g02680 pycom04g02690
rosa_chinensis	RchiOBHm_Chr4g0408981
rosa_laevigata	RLG00000008601
rosa_multiflora	Rmu_sc0003685.1_g000003 Rmu_sc0031886.1_g000002
rosa_roxburghii	Rroxscaffold_5G00353410
rosa_rugosa	Rorug04G0088900 Rorug04G0088900
rosa_samantha	Rh4AG153000 Rh4BG150900 Rh4CG161400 Rh4DG146400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	2 cut(s)	190, 247
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	396
AjnI	CCWGG	1 cut(s)	273
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	5 cut(s)	33, 142, 370, 478, 485
AluI	AGCT	5 cut(s)	33, 142, 370, 478, 485
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	2 cut(s)	190, 247
AoxI	GGCC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	3 cut(s)	136, 236, 404
AvaII	GGWCC	1 cut(s)	52
BauI	CACGAG	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	358
BccI	CCATC	2 cut(s)	423, 440
BciT130I	CCWGG	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	1 cut(s)	486
BglII	AGATCT	1 cut(s)	229
BlpI	GCTNAGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	3 cut(s)	102, 168, 444
BpiI	GAAGAC	1 cut(s)	358
Bpu1102I	GCTNAGC	1 cut(s)	34
BsaBI	GATNNNNATC	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	304, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	173
Bse3DI	GCAATG	2 cut(s)	182, 464
Bse8I	GATNNNNATC	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	304, 439
BseGI	GGATG	1 cut(s)	117
BseJI	GATNNNNATC	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMI	GCAATG	2 cut(s)	182, 464
BseMII	CTCAG	3 cut(s)	70, 197, 251
BseNI	ACTGG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	278
Bsp143I	GATC	4 cut(s)	150, 195, 229, 252
Bsp1720I	GCTNAGC	1 cut(s)	34
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	3 cut(s)	69, 198, 252
BspHI	TCATGA	1 cut(s)	192
BspPI	GGATC	2 cut(s)	190, 247
BsrDI	GCAATG	2 cut(s)	182, 464
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	304, 439
BssMI	GATC	4 cut(s)	150, 195, 229, 252
BssSI	CACGAG	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	439
Bst2BI	CACGAG	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	359
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstC8I	GCNNGC	3 cut(s)	105, 117, 476
BstDEI	CTNAG	4 cut(s)	34, 56, 206, 260
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	4 cut(s)	153, 198, 232, 255
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	4 cut(s)	150, 195, 229, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 178, 376
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	117
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	2 cut(s)	20, 180
Cac8I	GCNNGC	3 cut(s)	105, 117, 476
CciI	TCATGA	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	52
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	9 cut(s)	33, 38, 142, 278, 303, 335, 370, 478, 485
CviKI_1	RGCY	9 cut(s)	33, 38, 142, 278, 303, 335, 370, 478, 485
DdeI	CTNAG	4 cut(s)	34, 56, 206, 260
DpnI	GATC	4 cut(s)	152, 197, 231, 254
DpnII	GATC	4 cut(s)	150, 195, 229, 252
Eco130I	CCWWGG	1 cut(s)	439
Eco147I	AGGCCT	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	439
FaeI	CATG	1 cut(s)	196
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	1 cut(s)	192
FokI	GGATG	1 cut(s)	124
FspBI	CTAG	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	278
Hin1II	CATG	1 cut(s)	196
HindIII	AAGCTT	2 cut(s)	31, 368
HinfI	GANTC	1 cut(s)	341
HphI	GGTGA	3 cut(s)	136, 236, 404
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	3 cut(s)	207, 234, 482
Hpy188III	TCNNGA	3 cut(s)	193, 427, 451
Hpy8I	GTNNAC	1 cut(s)	345
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	5 cut(s)	107, 187, 379, 457, 474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 178, 376
HpyF3I	CTNAG	4 cut(s)	34, 56, 206, 260
Hsp92II	CATG	1 cut(s)	196
Kzo9I	GATC	4 cut(s)	150, 195, 229, 252
LmnI	GCTCC	2 cut(s)	139, 482
LpnPI	CCDG	7 cut(s)	107, 186, 212, 240, 260, 272, 287
LweI	GCATC	3 cut(s)	102, 168, 444
MaeI	CTAG	1 cut(s)	486
MaeIII	GTNAC	3 cut(s)	242, 410, 448
MalI	GATC	4 cut(s)	152, 197, 231, 254
MboI	GATC	4 cut(s)	150, 195, 229, 252
MboII	GAAGA	2 cut(s)	363, 427
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	3 cut(s)	154, 284, 466
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	4 cut(s)	65, 72, 84, 299
MslI	CAYNNNNRTG	1 cut(s)	316
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	3 cut(s)	22, 178, 376
NdeII	GATC	4 cut(s)	150, 195, 229, 252
NlaIII	CATG	1 cut(s)	196
NmeAIII	GCCGAG	2 cut(s)	51, 329
NmuCI	GTSAC	3 cut(s)	242, 410, 448
PagI	TCATGA	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	278
PflFI	GACNNNGTC	1 cut(s)	357
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	229
PsyI	GACNNNGTC	1 cut(s)	357
RseI	CAYNNNNRTG	1 cut(s)	316
Sau3AI	GATC	4 cut(s)	150, 195, 229, 252
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	275
SetI	ASST	8 cut(s)	35, 57, 126, 144, 249, 372, 480, 487
SfaNI	GCATC	3 cut(s)	102, 168, 444
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	316
Sse9I	AATT	3 cut(s)	154, 284, 466
SseBI	AGGCCT	1 cut(s)	278
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	486
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	439
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	428
TasI	AATT	3 cut(s)	154, 284, 466
TscAI	CASTG	2 cut(s)	27, 180
TseFI	GTSAC	3 cut(s)	242, 410, 448
Tsp45I	GTSAC	3 cut(s)	242, 410, 448
TspDTI	ATGAA	1 cut(s)	277
TspRI	CASTG	2 cut(s)	27, 180
Tth111I	GACNNNGTC	1 cut(s)	357
VpaK11BI	GGWCC	1 cut(s)	52
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.