pycom04g03760

purine nucleoside binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0007120
Physical Location & Seq
Forward (+)
3365020 .. 3368391
3372 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g03760.3

Sequence Viewer

Length: 993 bp
ATGCTCCAAGTATTAAACAATGAAGAAGGTACTGCTGAGGATGGCAGCTCTTGTGATGTTGAGGAAAGTAAGCTGGAATTACAGTTGGCAATTGTAGGAAGACCAAATGTTGGGAAGTCAACCTTGCTGAATACATTGTTACAAGAAGAACGTGTGCTGGTGGGCCCAGAAGCTGGTTTGACAAGAGATTCAATTAGAGCTCAGTTTGAGTTTGAAGGGAGAACTGTATTCCTGGTCGACACTGCAGGTTGGTTGCAACGAGGTAAACAAGAGAAGGGACCATCATCCTTGAGCATTGTGCAGACAAGGAAGAATCTAATGAGAGCTCATGTAGTTGCTCTGGTCCTTGATGCGGAAGAGATTGCAAATTCTAGGAGAAGTTTGAAGCATGATGAAGTAGTTATAGCTAGACAGGCAGTTGAAGAAGGCCGGGGCTTGGTTGTGGTTGTGAACAAGATGGATCTATTAAGAGGGAAGCAATTATTTGACAAGGTCATGGAAATTGTGCCCCAAGAAATCCAGACTATTATGCCCCAGGTGACTGGGATACCAATCGTATTCATATCAGCCTTGGAGGGAAGGGGCCACGCAGATGTCATGCACCAAGTTATTGATACATATGAAAAATGGTGTTCAAGATTGTCAACAGCTCGTCTCAACCGTTGGTTGCGTAAGGTTATGAGCAGGCACTCTTGGAAAGATCAGGCTGCTCAACCCAAGGTTAAGTACTTCACGCAGGTGAAGGCCAGACCTCCTACTTTTGTCGCCTTTTTGAGTGGGAAGAAAGAGCTCTCGGAAACAGACATCAGGTTCTTAAAAAGGTCTTTGAAGGAAGACTTTGATTTGGGTGGAATACCGATCAGATCGATCATGCAGAGGTCCGTCGAAAGGAAAGCTGCAAGTAGCACTAGCAAGAGCGGCCAAATTACTAATAGACCGGCTGAAAGGATGTCGTCCGACAAGAGAAGTAGTGTGTCGGTTGAAGTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_dom-like MMR_HSR1

Protein Analysis

331

Amino Acids

37.05

Weight (kDa)

9.37

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
Acc36I ACCTGC 2 cut(s) 236, 727
AccB7I CCANNNNNTGG 2 cut(s) 110, 173
AccBSI CCGCTC 1 cut(s) 918
AccI GTMKAC 1 cut(s) 237
AciI CCGC 2 cut(s) 353, 918
AclWI GGATC 1 cut(s) 468
AcoI YGGCCR 1 cut(s) 919
AcsI RAATTY 1 cut(s) 367
AfaI GTAC 2 cut(s) 31, 728
AfiI CCNNNNNNNGG 5 cut(s) 110, 173, 352, 436, 888
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 8 cut(s) 192, 215, 385, 422, 636, 829, 983, 989
AjnI CCWGG 2 cut(s) 231, 534
AleI CACNNNNGTG 1 cut(s) 737
AluBI AGCT 9 cut(s) 48, 73, 173, 200, 326, 407, 650, 790, 896
AluI AGCT 9 cut(s) 48, 73, 173, 200, 326, 407, 650, 790, 896
Alw21I GWGCWC 3 cut(s) 202, 328, 792
Alw26I GTCTC 1 cut(s) 659
AlwI GGATC 1 cut(s) 468
AlwNI CAGNNNCTG 1 cut(s) 173
AoxI GGCC 5 cut(s) 163, 427, 583, 744, 919
ApaI GGGCCC 1 cut(s) 167
ApeKI GCWGC 3 cut(s) 45, 707, 896
ApoI RAATTY 1 cut(s) 367
AspS9I GGNCC 6 cut(s) 163, 164, 278, 343, 583, 879
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 2 cut(s) 550, 751
AvaII GGWCC 3 cut(s) 278, 343, 879
BaeGI GKGCMC 2 cut(s) 167, 510
BanII GRGCYC 4 cut(s) 167, 202, 328, 792
BbsI GAAGAC 2 cut(s) 106, 840
Bbv12I GWGCWC 3 cut(s) 202, 328, 792
BbvCI CCTCAGC 1 cut(s) 36
BbvI GCAGC 3 cut(s) 57, 694, 883
BccI CCATC 3 cut(s) 35, 289, 451
BciT130I CCWGG 2 cut(s) 233, 536
BciVI GTATCC 1 cut(s) 540
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 1 cut(s) 659
BfaI CTAG 3 cut(s) 372, 408, 909
BfmI CTRYAG 1 cut(s) 243
BfuAI ACCTGC 2 cut(s) 236, 727
BfuI GTATCC 1 cut(s) 540
BisI GCNGC 4 cut(s) 46, 708, 897, 919
BlsI GCNGC 4 cut(s) 47, 709, 898, 920
BmcAI AGTACT 1 cut(s) 728
Bme1390I CCNGG 3 cut(s) 233, 431, 536
Bme18I GGWCC 3 cut(s) 278, 343, 879
BmgT120I GGNCC 6 cut(s) 163, 164, 278, 343, 583, 879
BmiI GGNNCC 3 cut(s) 165, 279, 584
BmrFI CCNGG 3 cut(s) 233, 431, 536
BmrI ACTGGG 1 cut(s) 552
BmsI GCATC 1 cut(s) 340
BmuI ACTGGG 1 cut(s) 552
BpiI GAAGAC 2 cut(s) 106, 840
Bpu10I CCTNAGC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 310
BpuMI CCSGG 1 cut(s) 431
Bsa29I ATCGAT 1 cut(s) 866
BsaBI GATNNNNATC 1 cut(s) 551
BsaJI CCNNGG 4 cut(s) 430, 534, 570, 717
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 173, 352, 436, 888
Bse118I RCCGGY 1 cut(s) 937
Bse1I ACTGG 1 cut(s) 547
Bse8I GATNNNNATC 1 cut(s) 551
BseBI CCWGG 2 cut(s) 233, 536
BseCI ATCGAT 1 cut(s) 866
BseDI CCNNGG 4 cut(s) 430, 534, 570, 717
BseGI GGATG 3 cut(s) 46, 284, 954
BseJI GATNNNNATC 1 cut(s) 551
BseLI CCNNNNNNNGG 5 cut(s) 110, 173, 352, 436, 888
BseMII CTCAG 2 cut(s) 27, 215
BseNI ACTGG 1 cut(s) 547
BseSI GKGCMC 2 cut(s) 167, 510
BseXI GCAGC 3 cut(s) 57, 694, 883
BsgI GTGCAG 1 cut(s) 320
BshFI GGCC 5 cut(s) 165, 429, 585, 746, 921
BshVI ATCGAT 1 cut(s) 866
BsiHKAI GWGCWC 3 cut(s) 202, 328, 792
BsiSI CCGG 2 cut(s) 430, 938
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 5 cut(s) 110, 173, 352, 436, 888
BsmAI GTCTC 1 cut(s) 659
BsmBI CGTCTC 1 cut(s) 659
BsmFI GGGAC 1 cut(s) 291
BsnI GGCC 5 cut(s) 165, 429, 585, 746, 921
Bsp120I GGGCCC 1 cut(s) 163
Bsp1286I GDGCHC 5 cut(s) 167, 202, 328, 510, 792
Bsp143I GATC 5 cut(s) 460, 700, 858, 863, 867
BspACI CCGC 2 cut(s) 353, 918
BspANI GGCC 5 cut(s) 165, 429, 585, 746, 921
BspCNI CTCAG 2 cut(s) 28, 214
BspDI ATCGAT 1 cut(s) 866
BspLI GGNNCC 3 cut(s) 165, 279, 584
BspMAI CTGCAG 1 cut(s) 247
BspMI ACCTGC 2 cut(s) 236, 727
BspPI GGATC 1 cut(s) 468
BsrBI CCGCTC 1 cut(s) 918
BsrFI RCCGGY 1 cut(s) 937
BsrI ACTGG 1 cut(s) 547
BssAI RCCGGY 1 cut(s) 937
BssECI CCNNGG 4 cut(s) 430, 534, 570, 717
BssMI GATC 5 cut(s) 460, 700, 858, 863, 867
BssT1I CCWWGG 2 cut(s) 570, 717
Bst2UI CCWGG 2 cut(s) 233, 536
Bst4CI ACNGT 3 cut(s) 84, 226, 662
Bst6I CTCTTC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 686
BstDEI CTNAG 2 cut(s) 36, 201
BstF5I GGATG 3 cut(s) 46, 284, 954
BstKTI GATC 5 cut(s) 463, 703, 861, 866, 870
BstMAI GTCTC 1 cut(s) 659
BstMBI GATC 5 cut(s) 460, 700, 858, 863, 867
BstMWI GCNNNNNNNGC 2 cut(s) 413, 918
BstNI CCWGG 2 cut(s) 233, 536
BstSCI CCNGG 3 cut(s) 231, 429, 534
BstSFI CTRYAG 1 cut(s) 243
BstSLI GKGCMC 2 cut(s) 167, 510
BstV1I GCAGC 3 cut(s) 57, 694, 883
BstV2I GAAGAC 2 cut(s) 106, 840
BstX2I RGATCY 1 cut(s) 460
BstXI CCANNNNNNTGG 1 cut(s) 542
BstYI RGATCY 1 cut(s) 460
Bsu15I ATCGAT 1 cut(s) 866
BsuI GTATCC 1 cut(s) 540
BsuRI GGCC 5 cut(s) 165, 429, 585, 746, 921
BsuTUI ATCGAT 1 cut(s) 866
BtsCI GGATG 3 cut(s) 46, 284, 954
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 240
BveI ACCTGC 2 cut(s) 236, 727
Cac8I GCNNGC 1 cut(s) 686
CaiI CAGNNNCTG 1 cut(s) 173
Cfr10I RCCGGY 1 cut(s) 937
Cfr13I GGNCC 6 cut(s) 163, 164, 278, 343, 583, 879
ClaI ATCGAT 1 cut(s) 866
Csp6I GTAC 2 cut(s) 30, 727
CviAII CATG 5 cut(s) 329, 389, 496, 598, 871
CviQI GTAC 2 cut(s) 30, 727
DdeI CTNAG 2 cut(s) 36, 201
DpnI GATC 5 cut(s) 462, 702, 860, 865, 869
DpnII GATC 5 cut(s) 460, 700, 858, 863, 867
EaeI YGGCCR 1 cut(s) 919
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Ecl136II GAGCTC 3 cut(s) 200, 326, 790
Eco130I CCWWGG 2 cut(s) 570, 717
Eco24I GRGCYC 4 cut(s) 167, 202, 328, 792
Eco47I GGWCC 3 cut(s) 278, 343, 879
Eco53kI GAGCTC 3 cut(s) 200, 326, 790
EcoICRI GAGCTC 3 cut(s) 200, 326, 790
EcoRII CCWGG 2 cut(s) 231, 534
EcoT14I CCWWGG 2 cut(s) 570, 717
EcoT38I GRGCYC 4 cut(s) 167, 202, 328, 792
ErhI CCWWGG 2 cut(s) 570, 717
Esp3I CGTCTC 1 cut(s) 659
FaeI CATG 5 cut(s) 332, 392, 499, 601, 874
FalI AAGNNNNNCTT 4 cut(s) 107, 139, 821, 853
FaqI GGGAC 1 cut(s) 291
FatI CATG 5 cut(s) 328, 388, 495, 597, 870
FauNDI CATATG 1 cut(s) 619
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 4 cut(s) 46, 708, 897, 919
FokI GGATG 3 cut(s) 53, 271, 961
FriOI GRGCYC 4 cut(s) 167, 202, 328, 792
Fsp4HI GCNGC 4 cut(s) 46, 708, 897, 919
FspBI CTAG 3 cut(s) 372, 408, 909
GluI GCNGC 4 cut(s) 46, 708, 897, 919
HaeIII GGCC 5 cut(s) 165, 429, 585, 746, 921
HapII CCGG 2 cut(s) 430, 938
Hin1II CATG 5 cut(s) 332, 392, 499, 601, 874
HincII GTYRAC 3 cut(s) 120, 238, 645
HindII GTYRAC 3 cut(s) 120, 238, 645
HinfI GANTC 2 cut(s) 188, 313
HpaII CCGG 2 cut(s) 430, 938
HphI GGTGA 2 cut(s) 550, 751
Hpy166II GTNNAC 5 cut(s) 120, 238, 266, 451, 645
Hpy188I TCNGA 3 cut(s) 796, 863, 958
Hpy188III TCNNGA 2 cut(s) 520, 636
Hpy8I GTNNAC 5 cut(s) 120, 238, 266, 451, 645
Hpy99I CGWCG 1 cut(s) 887
HpyAV CCTTC 7 cut(s) 20, 209, 268, 419, 573, 736, 823
HpyCH4III ACNGT 3 cut(s) 84, 226, 662
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 7 cut(s) 245, 256, 301, 365, 601, 874, 899
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 918
HpyF3I CTNAG 2 cut(s) 36, 201
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 5 cut(s) 332, 392, 499, 601, 874
Kzo9I GATC 5 cut(s) 460, 700, 858, 863, 867
LmnI GCTCC 1 cut(s) 9
Lsp1109I GCAGC 3 cut(s) 57, 694, 883
LweI GCATC 1 cut(s) 340
MaeI CTAG 3 cut(s) 372, 408, 909
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 2 cut(s) 138, 538
MalI GATC 5 cut(s) 462, 702, 860, 865, 869
MbiI CCGCTC 1 cut(s) 918
MboI GATC 5 cut(s) 460, 700, 858, 863, 867
MboII GAAGA 8 cut(s) 35, 111, 158, 322, 368, 434, 793, 845
MfeI CAATTG 1 cut(s) 90
MflI RGATCY 1 cut(s) 460
MhlI GDGCHC 5 cut(s) 167, 202, 328, 510, 792
MluCI AATT 7 cut(s) 77, 90, 192, 367, 479, 501, 924
MmeI TCCRAC 1 cut(s) 981
MnlI CCTC 7 cut(s) 31, 55, 254, 464, 568, 762, 870
MseI TTAA 4 cut(s) 14, 467, 723, 815
MslI CAYNNNNRTG 2 cut(s) 591, 737
MspI CCGG 2 cut(s) 430, 938
MspR9I CCNGG 3 cut(s) 233, 431, 536
MunI CAATTG 1 cut(s) 90
MvaI CCWGG 2 cut(s) 233, 536
MwoI GCNNNNNNNGC 2 cut(s) 413, 918
NciI CCSGG 1 cut(s) 431
NdeI CATATG 1 cut(s) 619
NdeII GATC 5 cut(s) 460, 700, 858, 863, 867
NlaIII CATG 5 cut(s) 332, 392, 499, 601, 874
NlaIV GGNNCC 3 cut(s) 165, 279, 584
NmuCI GTSAC 1 cut(s) 538
OliI CACNNNNGTG 1 cut(s) 737
PaqCI CACCTGC 1 cut(s) 727
PcsI WCGNNNNNNNCGW 1 cut(s) 658
PfeI GAWTC 2 cut(s) 188, 313
PflFI GACNNNGTC 1 cut(s) 491
PflMI CCANNNNNTGG 2 cut(s) 110, 173
PkrI GCNGC 4 cut(s) 47, 709, 898, 920
Psp124BI GAGCTC 3 cut(s) 202, 328, 792
Psp6I CCWGG 2 cut(s) 231, 534
PspGI CCWGG 2 cut(s) 231, 534
PspN4I GGNNCC 3 cut(s) 165, 279, 584
PspOMI GGGCCC 1 cut(s) 163
PspPI GGNCC 6 cut(s) 163, 164, 278, 343, 583, 879
PstI CTGCAG 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 173
PsuI RGATCY 1 cut(s) 460
PsyI GACNNNGTC 1 cut(s) 491
RsaI GTAC 2 cut(s) 31, 728
RsaNI GTAC 2 cut(s) 30, 727
RseI CAYNNNNRTG 2 cut(s) 591, 737
SacI GAGCTC 3 cut(s) 202, 328, 792
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 4 cut(s) 14, 467, 723, 815
SatI GCNGC 4 cut(s) 46, 708, 897, 919
Sau3AI GATC 5 cut(s) 460, 700, 858, 863, 867
Sau96I GGNCC 6 cut(s) 163, 164, 278, 343, 583, 879
ScaI AGTACT 1 cut(s) 728
ScrFI CCNGG 3 cut(s) 233, 431, 536
SduI GDGCHC 5 cut(s) 167, 202, 328, 510, 792
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 243
SinI GGWCC 3 cut(s) 278, 343, 879
SmiMI CAYNNNNRTG 2 cut(s) 591, 737
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
Sse9I AATT 7 cut(s) 77, 90, 192, 367, 479, 501, 924
SsiI CCGC 2 cut(s) 353, 918
SspMI CTAG 3 cut(s) 372, 408, 909
SstI GAGCTC 3 cut(s) 202, 328, 792
StyD4I CCNGG 3 cut(s) 231, 429, 534
StyI CCWWGG 2 cut(s) 570, 717
TaaI ACNGT 3 cut(s) 84, 226, 662
TaiI ACGT 1 cut(s) 154
TaqI TCGA 3 cut(s) 237, 866, 885
TasI AATT 7 cut(s) 77, 90, 192, 367, 479, 501, 924
TatI WGTACW 1 cut(s) 726
TauI GCSGC 1 cut(s) 921
TfiI GAWTC 2 cut(s) 188, 313
Tru1I TTAA 4 cut(s) 14, 467, 723, 815
Tru9I TTAA 4 cut(s) 14, 467, 723, 815
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 3 cut(s) 45, 707, 896
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 4 cut(s) 36, 408, 550, 636
TspGWI ACGGA 1 cut(s) 871
TspRI CASTG 1 cut(s) 247
Tth111I GACNNNGTC 1 cut(s) 491
Van91I CCANNNNNTGG 2 cut(s) 110, 173
VpaK11BI GGWCC 3 cut(s) 278, 343, 879
XapI RAATTY 1 cut(s) 367
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 3 cut(s) 372, 408, 909
ZrmI AGTACT 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.