Rorug05G0146900

purine nucleoside binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007120
Physical Location & Seq
Forward (+)
13698951 .. 13699875
925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0146900.1

Sequence Viewer

Length: 732 bp
ATGATGGCTGCATATTTTTCTTTTATCAGCGTTACACCACCAGCACGTTACAACTTCGACGATGTCGGGGGACCCAGTCCCAAGACTGCAACTCCAATTAGGAAAGCATGGTGGTCAGCAGTTATTAGTCGAATTTGGGAAATATTGTCAGAAGCAACCATTCTAATATGGCAAATACTGTTAGATGTTACAACTCTGATTTTGAGAAGGACATGGTCAACAGTCGCAGATGGAGTTGTGATATTATACAGAGTCGCATATTTAATCTGTGAACATATAATTCACCTCATCTTACTGCCTTCAGTCAAGTGGGAAGGGGCATTCGTAATATCATGTATTGCAGTTTCATTGGATCCTTTATTCTTTTACATTCCGATAATCGACGAGACGAACAAGTGCCTTGCAGTGGACAAAATATTGAGAACTACAGCTGTTGTCCTGCGATTACTTACAGATATCCCTTTAACACTCCATTTTATAGCTCAACTTTGTGATAGGGTCGATACCGACCATCCCAACTTGTCCGACTCCGATTCTGATCACTCAGACTCCGACTCAGACTCCGACTCCGGCTCAGACTCTGACTTCGAGACAACATCATGTTCACTAAAATCTGTTAAAAAGAGGACAGCTAGGAGGATGCCGTGGTTATCCGTTCCTATTGTAATTAACTTTCTGGCTGTACTTCCAATCCCACAGGCCTGTGAGGGGTGCCTTAGTTTGATCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_dom-like MMR_HSR1

Protein Analysis

243

Amino Acids

27.15

Weight (kDa)

5.28

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 711
AclWI GGATC 3 cut(s) 347, 360, 718
AcsI RAATTY 1 cut(s) 132
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 1 cut(s) 684
AfiI CCNNNNNNNGG 2 cut(s) 406, 708
AluBI AGCT 3 cut(s) 431, 482, 632
AluI AGCT 3 cut(s) 431, 482, 632
Alw26I GTCTC 2 cut(s) 380, 584
AlwI GGATC 3 cut(s) 347, 360, 718
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 1 cut(s) 699
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 132
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 275
AvaII GGWCC 1 cut(s) 71
BamHI GGATCC 1 cut(s) 352
BanI GGYRCC 1 cut(s) 711
BccI CCATC 2 cut(s) 224, 519
BceAI ACGGC 1 cut(s) 628
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 2 cut(s) 380, 584
BfaI CTAG 1 cut(s) 633
BfmI CTRYAG 1 cut(s) 426
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 4 cut(s) 72, 73, 354, 713
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 630
BmuI ACTGGG 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 537
BsaJI CCNNGG 1 cut(s) 644
BsaXI ACNNNNNCTCC 8 cut(s) 76, 106, 533, 545, 551, 563, 575, 581
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 708
Bse1I ACTGG 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 537
BseDI CCNNGG 1 cut(s) 644
BseGI GGATG 2 cut(s) 511, 645
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 2 cut(s) 406, 708
BseMII CTCAG 3 cut(s) 558, 570, 588
BseNI ACTGG 1 cut(s) 75
BshFI GGCC 1 cut(s) 701
BshNI GGYRCC 1 cut(s) 711
BsiSI CCGG 1 cut(s) 570
BslFI GGGAC 2 cut(s) 63, 84
BslI CCNNNNNNNGG 2 cut(s) 406, 708
BsmAI GTCTC 2 cut(s) 380, 584
BsmBI CGTCTC 1 cut(s) 380
BsmFI GGGAC 2 cut(s) 63, 84
BsmI GAATGC 1 cut(s) 320
BsnI GGCC 1 cut(s) 701
Bsp143I GATC 3 cut(s) 352, 538, 723
BspANI GGCC 1 cut(s) 701
BspCNI CTCAG 3 cut(s) 557, 569, 587
BspLI GGNNCC 4 cut(s) 72, 73, 354, 713
BspPI GGATC 3 cut(s) 347, 360, 718
BspT107I GGYRCC 1 cut(s) 711
BsrI ACTGG 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 644
BssMI GATC 3 cut(s) 352, 538, 723
Bst4CI ACNGT 2 cut(s) 180, 223
BstDEI CTNAG 4 cut(s) 544, 556, 574, 716
BstDSI CCRYGG 1 cut(s) 644
BstF5I GGATG 2 cut(s) 511, 645
BstKTI GATC 3 cut(s) 355, 541, 726
BstMAI GTCTC 2 cut(s) 380, 584
BstMBI GATC 3 cut(s) 352, 538, 723
BstSFI CTRYAG 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 1 cut(s) 701
BtgI CCRYGG 1 cut(s) 644
BtsCI GGATG 2 cut(s) 511, 645
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 411
CaiI CAGNNNCTG 1 cut(s) 581
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 683
CviAII CATG 4 cut(s) 108, 213, 333, 600
CviJI RGCY 7 cut(s) 8, 431, 482, 573, 632, 680, 701
CviKI_1 RGCY 7 cut(s) 8, 431, 482, 573, 632, 680, 701
CviQI GTAC 1 cut(s) 683
DdeI CTNAG 4 cut(s) 544, 556, 574, 716
DpnI GATC 3 cut(s) 354, 540, 725
DpnII GATC 3 cut(s) 352, 538, 723
Eco147I AGGCCT 1 cut(s) 701
Eco32I GATATC 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 71
EcoRV GATATC 1 cut(s) 457
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 4 cut(s) 111, 216, 336, 603
FaqI GGGAC 2 cut(s) 63, 84
FatI CATG 4 cut(s) 107, 212, 332, 599
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 2 cut(s) 498, 652
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 1 cut(s) 633
GluI GCNGC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 701
HapII CCGG 1 cut(s) 570
Hin1II CATG 4 cut(s) 111, 216, 336, 603
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HinfI GANTC 8 cut(s) 252, 527, 533, 548, 554, 560, 566, 578
HpaII CCGG 1 cut(s) 570
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 4 cut(s) 219, 272, 409, 605
Hpy188III TCNNGA 1 cut(s) 589
Hpy8I GTNNAC 4 cut(s) 219, 272, 409, 605
Hpy99I CGWCG 2 cut(s) 62, 386
HpyAV CCTTC 3 cut(s) 201, 308, 309
HpyCH4III ACNGT 2 cut(s) 180, 223
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 4 cut(s) 11, 89, 341, 404
HpyF3I CTNAG 4 cut(s) 544, 556, 574, 716
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 4 cut(s) 111, 216, 336, 603
KflI GGGWCCC 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 3 cut(s) 352, 538, 723
LpnPI CCDG 7 cut(s) 54, 88, 452, 583, 662, 683, 715
LweI GCATC 1 cut(s) 630
MaeI CTAG 1 cut(s) 633
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 3 cut(s) 31, 47, 187
MalI GATC 3 cut(s) 354, 540, 725
MboI GATC 3 cut(s) 352, 538, 723
MflI RGATCY 1 cut(s) 352
MluCI AATT 4 cut(s) 96, 132, 279, 666
MlyI GAGTC 7 cut(s) 261, 521, 542, 548, 554, 560, 572
MmeI TCCRAC 3 cut(s) 549, 576, 588
MnlI CCTC 4 cut(s) 296, 618, 630, 700
MseI TTAA 4 cut(s) 263, 464, 618, 669
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 1 cut(s) 570
Mva1269I GAATGC 1 cut(s) 320
NdeII GATC 3 cut(s) 352, 538, 723
NlaIII CATG 4 cut(s) 111, 216, 336, 603
NlaIV GGNNCC 4 cut(s) 72, 73, 354, 713
PceI AGGCCT 1 cut(s) 701
PctI GAATGC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 533
PflFI GACNNNGTC 3 cut(s) 62, 75, 214
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 7 cut(s) 260, 521, 542, 548, 554, 560, 572
PpsI GAGTC 7 cut(s) 260, 521, 542, 548, 554, 560, 572
PpuMI RGGWCCY 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 71
PspN4I GGNNCC 4 cut(s) 72, 73, 354, 713
PspPI GGNCC 1 cut(s) 71
PspPPI RGGWCCY 1 cut(s) 71
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 1 cut(s) 352
PsyI GACNNNGTC 3 cut(s) 62, 75, 214
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 1 cut(s) 684
RsaNI GTAC 1 cut(s) 683
SaqAI TTAA 4 cut(s) 263, 464, 618, 669
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 3 cut(s) 352, 538, 723
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 7 cut(s) 261, 521, 542, 548, 554, 560, 572
SetI ASST 5 cut(s) 49, 288, 433, 484, 634
SfaNI GCATC 1 cut(s) 630
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 1 cut(s) 71
Sse9I AATT 4 cut(s) 96, 132, 279, 666
SseBI AGGCCT 1 cut(s) 701
SspI AATATT 2 cut(s) 144, 417
SspMI CTAG 1 cut(s) 633
StuI AGGCCT 1 cut(s) 701
TaaI ACNGT 2 cut(s) 180, 223
TaiI ACGT 1 cut(s) 49
TaqI TCGA 5 cut(s) 57, 130, 381, 501, 588
TasI AATT 4 cut(s) 96, 132, 279, 666
TatI WGTACW 1 cut(s) 682
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 4 cut(s) 263, 464, 618, 669
Tru9I TTAA 4 cut(s) 263, 464, 618, 669
TscAI CASTG 1 cut(s) 411
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 336
TspGWI ACGGA 1 cut(s) 643
TspRI CASTG 1 cut(s) 411
Tth111I GACNNNGTC 3 cut(s) 62, 75, 214
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 1 cut(s) 132
XspI CTAG 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.