Rorug05G0147000

purine nucleoside binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007120
Physical Location & Seq
Forward (+)
13704387 .. 13706441
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0147000.1

Sequence Viewer

Length: 1404 bp
ATGGAGTTGGCAACTACAAAATCATTGAAGTCTGAGCAATCAAGGCTCAAGAAGATTGCAGCAAAGAAAAAAGAAATAAAATTGTGGATGTCAACTAACGATGTTTCTGTAATGTCAAGTAATGGGGTCTCTCTGAATATGAGAAAAAGAATCAAGAAATACATCAAACAACACCACATTGTGGAGAAGGACATAAAGGCCGATGTAGATCTGAAATATTTTCTAGATGATAATCGTTTTGCCACTGATCGTATCAGAGAGCCTCTGTGGGAGTATCTGGTCAAGAATGCAGCAGTAAAAAGTGTACCCATGCTTAAAAGGATGGATCAAAGCGGATGGAAAAGATTGTGCAGATATATGAAGCCGGTGATCTACAAAGAGAAAGAGGACATTGTAGAAAAGGCAGGAGAAAAGCTTGTTCAGATGATCTTCATAATACAAGGTGAATTTGAGTGCACCAACACAATGCTCACCCACCCTAATCATCTAAAGAAAGGTAAATGTTATGGATCAATACAAATTCAAAACTGGGCAGCAAGGAACTACATGAGGTCTTATTATGACCCTCTTCCTACTTCCACCGGACGGGTCAGATGTCAAACAAAAGTTGAAGCCTTTGCACTCCGGGCCTTGGACTTCTTACGTTTTGTCCAGCAGAATTTGAACCACTTTGTGCAGTTGAAAAAGTTGGCAGCGGCCGACGACATCAGTACTCCTCATCAGACACACAACCAGGATGATCAACATTCTGTGGAGTCATGGGAATGTCCTAAGAGTGGCCTGGTGAAACTCAACTATAGTGTTGTCTGGGATTCTGTTTCTAAGAAGGCCAAAATGGGCTGCGTTTGCAGGGATAACCGAGGAGCGTTCATGCTTGCTGGAAGCAGCTGTACTTCACCATATAACGACGCCTTTCTTGCTGAAGCTTCTGGCATGGCCAAGGCTATCGAGTACTGTCACCAGAATCGCCAGAATGTTATACTCCAAGCCGGCATTGGGATTGTTGTGGAGTCTGATAACCATGATCTCATTGATTGCCTCAATCGGCCTTTGGCTTCAAATGAAAGAATTAGTGAAATCCTTCGCCCCATCCTTGAAAGAATTCTAAATTTGGCTTCAAACTTTAAACCTAGATCTTTTATGTATTGTAACCGCCAAAGTAATACAGTAGCGAACCGCCTTGCAAACCATGCGGTGGATGCTGATGATCCTAATGTTTCAGCTTTCCGTGAAGCTCCGCCTGATTGGCTAATTCCTGCTCTCAAGGAGGATAGCCCGGATCTTTACACAGAACACGACGAGGAAATGGGTCGAAACAATGACTTCGGAGCAACTTCTCCAGATGCTGCTGCTAATGACGATGAGGACAGATATGCAATAATGGCAGAGGAGTCTCAGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_dom-like MMR_HSR1

Protein Analysis

467

Amino Acids

53.31

Weight (kDa)

8.34

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 265 - 398 2.5e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 181, 1195
AciI CCGC 6 cut(s) 333, 695, 1153, 1177, 1193, 1238
AclWI GGATC 4 cut(s) 333, 517, 1202, 1287
AcoI YGGCCR 2 cut(s) 696, 936
AcsI RAATTY 5 cut(s) 446, 519, 658, 1101, 1108
AcuI CTGAAG 1 cut(s) 942
AcyI GRCGYC 1 cut(s) 909
AdeI CACNNNGTG 2 cut(s) 181, 673
AfaI GTAC 4 cut(s) 306, 712, 892, 953
AfiI CCNNNNNNNGG 6 cut(s) 181, 585, 631, 776, 996, 1195
AgsI TTSAA 8 cut(s) 28, 524, 611, 664, 682, 1059, 1097, 1119
AjnI CCWGG 2 cut(s) 732, 780
AluBI AGCT 5 cut(s) 415, 888, 926, 1223, 1235
AluI AGCT 5 cut(s) 415, 888, 926, 1223, 1235
Alw21I GWGCWC 1 cut(s) 458
Alw26I GTCTC 2 cut(s) 133, 1398
Alw44I GTGCAC 1 cut(s) 454
AlwI GGATC 4 cut(s) 333, 517, 1202, 1287
AlwNI CAGNNNCTG 1 cut(s) 1346
AoxI GGCC 7 cut(s) 198, 627, 696, 778, 828, 936, 1046
ApaLI GTGCAC 1 cut(s) 454
ApeKI GCWGC 8 cut(s) 59, 290, 533, 692, 840, 885, 1346, 1349
ApoI RAATTY 5 cut(s) 446, 519, 658, 1101, 1108
Asp700I GAANNNNTTC 2 cut(s) 1080, 1101
AspS9I GGNCC 1 cut(s) 627
AsuC2I CCSGG 2 cut(s) 626, 1277
AsuHPI GGTGA 6 cut(s) 379, 455, 463, 796, 888, 950
BaeGI GKGCMC 1 cut(s) 458
BalI TGGCCA 1 cut(s) 938
BarI GAAGNNNNNNTAC 2 cut(s) 874, 906
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 8 cut(s) 71, 302, 545, 704, 827, 897, 1333, 1336
BccI CCATC 3 cut(s) 316, 330, 1097
BciT130I CCWGG 2 cut(s) 734, 782
BclI TGATCA 1 cut(s) 739
BcnI CCSGG 2 cut(s) 626, 1277
BcoDI GTCTC 2 cut(s) 133, 1398
BfaI CTAG 2 cut(s) 224, 1131
BfmI CTRYAG 1 cut(s) 796
BglI GCCNNNNNGGC 1 cut(s) 1246
BglII AGATCT 2 cut(s) 208, 1133
BisI GCNGC 9 cut(s) 60, 291, 534, 693, 696, 841, 886, 1347, 1350
BlsI GCNGC 9 cut(s) 61, 292, 535, 694, 697, 842, 887, 1348, 1351
BmcAI AGTACT 2 cut(s) 712, 953
Bme1390I CCNGG 4 cut(s) 626, 734, 782, 1277
BmgT120I GGNCC 1 cut(s) 627
BmrFI CCNGG 4 cut(s) 626, 734, 782, 1277
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 2 cut(s) 1189, 1333
BmuI ACTGGG 1 cut(s) 538
BpmI CTGGAG 1 cut(s) 1323
BpuEI CTTGAG 2 cut(s) 32, 1247
BpuMI CCSGG 2 cut(s) 626, 1277
BsaBI GATNNNNATC 2 cut(s) 207, 231
BsaHI GRCGYC 1 cut(s) 909
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 3 cut(s) 630, 859, 939
BsaWI WCCGGW 1 cut(s) 581
Bsc4I CCNNNNNNNGG 6 cut(s) 181, 585, 631, 776, 996, 1195
Bse118I RCCGGY 2 cut(s) 364, 989
Bse1I ACTGG 1 cut(s) 533
Bse8I GATNNNNATC 2 cut(s) 207, 231
BseBI CCWGG 2 cut(s) 734, 782
BseDI CCNNGG 3 cut(s) 630, 859, 939
BseGI GGATG 6 cut(s) 93, 327, 341, 742, 1089, 1204
BseJI GATNNNNATC 2 cut(s) 207, 231
BseLI CCNNNNNNNGG 6 cut(s) 181, 585, 631, 776, 996, 1195
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 533
BseRI GAGGAG 3 cut(s) 705, 876, 1403
BseSI GKGCMC 1 cut(s) 458
BseX3I CGGCCG 1 cut(s) 696
BseXI GCAGC 8 cut(s) 71, 302, 545, 704, 827, 897, 1333, 1336
BsgI GTGCAG 2 cut(s) 370, 695
Bsh1285I CGRYCG 1 cut(s) 699
BshFI GGCC 7 cut(s) 200, 629, 698, 780, 830, 938, 1048
BsiEI CGRYCG 1 cut(s) 699
BsiHKAI GWGCWC 1 cut(s) 458
BsiSI CCGG 5 cut(s) 365, 582, 625, 990, 1277
BslI CCNNNNNNNGG 6 cut(s) 181, 585, 631, 776, 996, 1195
BsmAI GTCTC 2 cut(s) 133, 1398
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 7 cut(s) 200, 629, 698, 780, 830, 938, 1048
Bso31I GGTCTC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 458
BspACI CCGC 6 cut(s) 333, 695, 1153, 1177, 1193, 1238
BspANI GGCC 7 cut(s) 200, 629, 698, 780, 830, 938, 1048
BspCNI CTCAG 1 cut(s) 25
BspPI GGATC 4 cut(s) 333, 517, 1202, 1287
BspTNI GGTCTC 1 cut(s) 133
BsrFI RCCGGY 2 cut(s) 364, 989
BsrI ACTGG 1 cut(s) 533
BssAI RCCGGY 2 cut(s) 364, 989
BssECI CCNNGG 3 cut(s) 630, 859, 939
BssNI GRCGYC 1 cut(s) 909
BssT1I CCWWGG 2 cut(s) 630, 939
Bst2UI CCWGG 2 cut(s) 734, 782
Bst4CI ACNGT 2 cut(s) 956, 1168
Bst6I CTCTTC 1 cut(s) 573
BstACI GRCGYC 1 cut(s) 909
BstAPI GCANNNNNTGC 1 cut(s) 1190
BstC8I GCNNGC 2 cut(s) 876, 991
BstDEI CTNAG 4 cut(s) 33, 771, 822, 1395
BstF5I GGATG 6 cut(s) 93, 327, 341, 742, 1089, 1204
BstMAI GTCTC 2 cut(s) 133, 1398
BstMCI CGRYCG 1 cut(s) 699
BstMWI GCNNNNNNNGC 8 cut(s) 43, 626, 846, 917, 1190, 1199, 1246, 1382
BstNI CCWGG 2 cut(s) 734, 782
BstSCI CCNGG 4 cut(s) 624, 732, 780, 1275
BstSFI CTRYAG 1 cut(s) 796
BstSLI GKGCMC 1 cut(s) 458
BstV1I GCAGC 8 cut(s) 71, 302, 545, 704, 827, 897, 1333, 1336
BstX2I RGATCY 3 cut(s) 208, 1133, 1279
BstYI RGATCY 3 cut(s) 208, 1133, 1279
BstZI CGGCCG 1 cut(s) 696
BsuRI GGCC 7 cut(s) 200, 629, 698, 780, 830, 938, 1048
BtsCI GGATG 6 cut(s) 93, 327, 341, 742, 1089, 1204
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 876, 991
CaiI CAGNNNCTG 1 cut(s) 1346
Cfr10I RCCGGY 2 cut(s) 364, 989
Cfr13I GGNCC 1 cut(s) 627
CseI GACGC 1 cut(s) 917
Csp6I GTAC 4 cut(s) 305, 711, 891, 952
CviAII CATG 7 cut(s) 310, 547, 759, 871, 934, 1022, 1190
CviQI GTAC 4 cut(s) 305, 711, 891, 952
DdeI CTNAG 4 cut(s) 33, 771, 822, 1395
DraI TTTAAA 1 cut(s) 1126
DraIII CACNNNGTG 2 cut(s) 181, 673
EaeI YGGCCR 2 cut(s) 696, 936
EagI CGGCCG 1 cut(s) 696
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
EciI GGCGGA 1 cut(s) 1227
EclXI CGGCCG 1 cut(s) 696
Eco130I CCWWGG 2 cut(s) 630, 939
Eco31I GGTCTC 1 cut(s) 133
Eco52I CGGCCG 1 cut(s) 696
Eco57I CTGAAG 1 cut(s) 942
EcoRI GAATTC 1 cut(s) 1101
EcoRII CCWGG 2 cut(s) 732, 780
EcoT14I CCWWGG 2 cut(s) 630, 939
ErhI CCWWGG 2 cut(s) 630, 939
FaeI CATG 7 cut(s) 313, 550, 762, 874, 937, 1025, 1193
FatI CATG 7 cut(s) 309, 546, 758, 870, 933, 1021, 1189
FbaI TGATCA 1 cut(s) 739
Fnu4HI GCNGC 9 cut(s) 60, 291, 534, 693, 696, 841, 886, 1347, 1350
FokI GGATG 6 cut(s) 100, 334, 348, 749, 1076, 1211
Fsp4HI GCNGC 9 cut(s) 60, 291, 534, 693, 696, 841, 886, 1347, 1350
FspBI CTAG 2 cut(s) 224, 1131
GluI GCNGC 9 cut(s) 60, 291, 534, 693, 696, 841, 886, 1347, 1350
GsuI CTGGAG 1 cut(s) 1323
HaeIII GGCC 7 cut(s) 200, 629, 698, 780, 830, 938, 1048
HapII CCGG 5 cut(s) 365, 582, 625, 990, 1277
HgaI GACGC 1 cut(s) 917
Hin1I GRCGYC 1 cut(s) 909
Hin1II CATG 7 cut(s) 313, 550, 762, 874, 937, 1025, 1193
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HindIII AAGCTT 2 cut(s) 413, 924
HinfI GANTC 6 cut(s) 150, 755, 812, 964, 1010, 1391
HpaII CCGG 5 cut(s) 365, 582, 625, 990, 1277
HphI GGTGA 6 cut(s) 379, 455, 463, 796, 888, 950
Hpy166II GTNNAC 3 cut(s) 93, 305, 456
Hpy188I TCNGA 9 cut(s) 34, 135, 213, 257, 423, 593, 723, 1015, 1328
Hpy188III TCNNGA 5 cut(s) 49, 154, 224, 283, 1340
Hpy8I GTNNAC 3 cut(s) 93, 305, 456
Hpy99I CGWCG 3 cut(s) 704, 911, 1301
HpyAV CCTTC 3 cut(s) 181, 820, 1091
HpyCH4III ACNGT 2 cut(s) 956, 1168
HpyCH4IV ACGT 1 cut(s) 643
HpyCH4V TGCA 9 cut(s) 59, 290, 351, 456, 620, 676, 849, 1184, 1376
HpyF10VI GCNNNNNNNGC 8 cut(s) 43, 626, 846, 917, 1190, 1199, 1246, 1382
HpyF3I CTNAG 4 cut(s) 33, 771, 822, 1395
HpySE526I ACGT 1 cut(s) 643
Hsp92I GRCGYC 1 cut(s) 909
Hsp92II CATG 7 cut(s) 313, 550, 762, 874, 937, 1025, 1193
KroI GCCGGC 1 cut(s) 989
KroNI GCCGGC 1 cut(s) 991
Ksp22I TGATCA 1 cut(s) 739
LmnI GCTCC 3 cut(s) 863, 1240, 1328
Lsp1109I GCAGC 8 cut(s) 71, 302, 545, 704, 827, 897, 1333, 1336
LweI GCATC 2 cut(s) 1189, 1333
MaeI CTAG 2 cut(s) 224, 1131
MaeII ACGT 1 cut(s) 643
MaeIII GTNAC 2 cut(s) 956, 1148
MboII GAAGA 3 cut(s) 64, 421, 560
MflI RGATCY 3 cut(s) 208, 1133, 1279
MhlI GDGCHC 1 cut(s) 458
MlsI TGGCCA 1 cut(s) 938
MluCI AATT 8 cut(s) 80, 446, 519, 658, 1068, 1101, 1108, 1251
MluNI TGGCCA 1 cut(s) 938
MlyI GAGTC 3 cut(s) 764, 1019, 1400
Mox20I TGGCCA 1 cut(s) 938
MroNI GCCGGC 1 cut(s) 989
MroXI GAANNNNTTC 2 cut(s) 1080, 1101
MscI TGGCCA 1 cut(s) 938
MseI TTAA 2 cut(s) 315, 1125
MslI CAYNNNNRTG 1 cut(s) 763
Msp20I TGGCCA 1 cut(s) 938
MspA1I CMGCKG 2 cut(s) 695, 888
MspI CCGG 5 cut(s) 365, 582, 625, 990, 1277
MspR9I CCNGG 4 cut(s) 626, 734, 782, 1277
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 2 cut(s) 734, 782
MwoI GCNNNNNNNGC 8 cut(s) 43, 626, 846, 917, 1190, 1199, 1246, 1382
NaeI GCCGGC 1 cut(s) 991
NciI CCSGG 2 cut(s) 626, 1277
NgoMIV GCCGGC 1 cut(s) 989
NlaIII CATG 7 cut(s) 313, 550, 762, 874, 937, 1025, 1193
NmuCI GTSAC 1 cut(s) 956
PctI GAATGC 1 cut(s) 292
PdiI GCCGGC 1 cut(s) 991
PdmI GAANNNNTTC 2 cut(s) 1080, 1101
PfeI GAWTC 3 cut(s) 150, 812, 964
PflMI CCANNNNNTGG 2 cut(s) 181, 1195
PkrI GCNGC 9 cut(s) 61, 292, 535, 694, 697, 842, 887, 1348, 1351
PleI GAGTC 3 cut(s) 763, 1018, 1399
PpsI GAGTC 3 cut(s) 763, 1018, 1399
Psp6I CCWGG 2 cut(s) 732, 780
PspGI CCWGG 2 cut(s) 732, 780
PspPI GGNCC 1 cut(s) 627
PstNI CAGNNNCTG 1 cut(s) 1346
PsuI RGATCY 3 cut(s) 208, 1133, 1279
PvuII CAGCTG 1 cut(s) 888
RsaI GTAC 4 cut(s) 306, 712, 892, 953
RsaNI GTAC 4 cut(s) 305, 711, 891, 952
RseI CAYNNNNRTG 1 cut(s) 763
SaqAI TTAA 2 cut(s) 315, 1125
SatI GCNGC 9 cut(s) 60, 291, 534, 693, 696, 841, 886, 1347, 1350
Sau96I GGNCC 1 cut(s) 627
ScaI AGTACT 2 cut(s) 712, 953
SchI GAGTC 3 cut(s) 764, 1019, 1400
ScrFI CCNGG 4 cut(s) 626, 734, 782, 1277
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 2 cut(s) 1189, 1333
SfcI CTRYAG 1 cut(s) 796
SmiMI CAYNNNNRTG 1 cut(s) 763
SmlI CTYRAG 2 cut(s) 47, 1262
SmoI CTYRAG 2 cut(s) 47, 1262
Sse9I AATT 8 cut(s) 80, 446, 519, 658, 1068, 1101, 1108, 1251
SsiI CCGC 6 cut(s) 333, 695, 1153, 1177, 1193, 1238
SspI AATATT 1 cut(s) 218
SspMI CTAG 2 cut(s) 224, 1131
StyD4I CCNGG 4 cut(s) 624, 732, 780, 1275
StyI CCWWGG 2 cut(s) 630, 939
TaaI ACNGT 2 cut(s) 956, 1168
TaiI ACGT 1 cut(s) 646
TaqI TCGA 2 cut(s) 948, 1312
TasI AATT 8 cut(s) 80, 446, 519, 658, 1068, 1101, 1108, 1251
TatI WGTACW 3 cut(s) 710, 890, 951
TauI GCSGC 1 cut(s) 698
TfiI GAWTC 3 cut(s) 150, 812, 964
Tru1I TTAA 2 cut(s) 315, 1125
Tru9I TTAA 2 cut(s) 315, 1125
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 956
TseI GCWGC 8 cut(s) 59, 290, 533, 692, 840, 885, 1346, 1349
Tsp45I GTSAC 1 cut(s) 956
TspDTI ATGAA 4 cut(s) 374, 421, 859, 1077
TspGWI ACGGA 1 cut(s) 1217
TspRI CASTG 1 cut(s) 250
Van91I CCANNNNNTGG 2 cut(s) 181, 1195
VneI GTGCAC 1 cut(s) 454
XapI RAATTY 5 cut(s) 446, 519, 658, 1101, 1108
XbaI TCTAGA 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 992
XmnI GAANNNNTTC 2 cut(s) 1080, 1101
XspI CTAG 2 cut(s) 224, 1131
ZrmI AGTACT 2 cut(s) 712, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.