pycom04g03760

purine nucleoside binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0007120
Physical Location & Seq
Forward (+)
3365020 .. 3368391
3372 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 993 bp
ATGCTCCAAGTATTAAACAATGAAGAAGGTACTGCTGAGGATGGCAGCTCTTGTGATGTTGAGGAAAGTAAGCTGGAATTACAGTTGGCAATTGTAGGAAGACCAAATGTTGGGAAGTCAACCTTGCTGAATACATTGTTACAAGAAGAACGTGTGCTGGTGGGCCCAGAAGCTGGTTTGACAAGAGATTCAATTAGAGCTCAGTTTGAGTTTGAAGGGAGAACTGTATTCCTGGTCGACACTGCAGGTTGGTTGCAACGAGGTAAACAAGAGAAGGGACCATCATCCTTGAGCATTGTGCAGACAAGGAAGAATCTAATGAGAGCTCATGTAGTTGCTCTGGTCCTTGATGCGGAAGAGATTGCAAATTCTAGGAGAAGTTTGAAGCATGATGAAGTAGTTATAGCTAGACAGGCAGTTGAAGAAGGCCGGGGCTTGGTTGTGGTTGTGAACAAGATGGATCTATTAAGAGGGAAGCAATTATTTGACAAGGTCATGGAAATTGTGCCCCAAGAAATCCAGACTATTATGCCCCAGGTGACTGGGATACCAATCGTATTCATATCAGCCTTGGAGGGAAGGGGCCACGCAGATGTCATGCACCAAGTTATTGATACATATGAAAAATGGTGTTCAAGATTGTCAACAGCTCGTCTCAACCGTTGGTTGCGTAAGGTTATGAGCAGGCACTCTTGGAAAGATCAGGCTGCTCAACCCAAGGTTAAGTACTTCACGCAGGTGAAGGCCAGACCTCCTACTTTTGTCGCCTTTTTGAGTGGGAAGAAAGAGCTCTCGGAAACAGACATCAGGTTCTTAAAAAGGTCTTTGAAGGAAGACTTTGATTTGGGTGGAATACCGATCAGATCGATCATGCAGAGGTCCGTCGAAAGGAAAGCTGCAAGTAGCACTAGCAAGAGCGGCCAAATTACTAATAGACCGGCTGAAAGGATGTCGTCCGACAAGAGAAGTAGTGTGTCGGTTGAAGTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_dom-like MMR_HSR1

Protein Analysis

331

Amino Acids

37.05

Weight (kDa)

9.37

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FeoB_N PF02421 28 - 202 1.3e-11 Ferrous iron transport protein B
MMR_HSR1 PF01926 29 - 152 2.8e-21 50S ribosome-binding GTPase
GTP_EFTU PF00009 29 - 207 2e-08 Elongation factor Tu GTP binding domain
KH_dom-like PF14714 213 - 290 3e-20 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
Acc36I ACCTGC 2 cut(s) 236, 727
AccB7I CCANNNNNTGG 2 cut(s) 110, 173
AccBSI CCGCTC 1 cut(s) 918
AccI GTMKAC 1 cut(s) 237
AciI CCGC 2 cut(s) 353, 918
AclWI GGATC 1 cut(s) 468
AcoI YGGCCR 1 cut(s) 919
AcsI RAATTY 1 cut(s) 367
AfaI GTAC 2 cut(s) 31, 728
AfiI CCNNNNNNNGG 5 cut(s) 110, 173, 352, 436, 888
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 8 cut(s) 192, 215, 385, 422, 636, 829, 983, 989
AjnI CCWGG 2 cut(s) 231, 534
AleI CACNNNNGTG 1 cut(s) 737
AluBI AGCT 9 cut(s) 48, 73, 173, 200, 326, 407, 650, 790, 896
AluI AGCT 9 cut(s) 48, 73, 173, 200, 326, 407, 650, 790, 896
Alw21I GWGCWC 3 cut(s) 202, 328, 792
Alw26I GTCTC 1 cut(s) 659
AlwI GGATC 1 cut(s) 468
AlwNI CAGNNNCTG 1 cut(s) 173
AoxI GGCC 5 cut(s) 163, 427, 583, 744, 919
ApaI GGGCCC 1 cut(s) 167
ApeKI GCWGC 3 cut(s) 45, 707, 896
ApoI RAATTY 1 cut(s) 367
AspS9I GGNCC 6 cut(s) 163, 164, 278, 343, 583, 879
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 2 cut(s) 550, 751
AvaII GGWCC 3 cut(s) 278, 343, 879
BaeGI GKGCMC 2 cut(s) 167, 510
BanII GRGCYC 4 cut(s) 167, 202, 328, 792
BbsI GAAGAC 2 cut(s) 106, 840
Bbv12I GWGCWC 3 cut(s) 202, 328, 792
BbvCI CCTCAGC 1 cut(s) 36
BbvI GCAGC 3 cut(s) 57, 694, 883
BccI CCATC 3 cut(s) 35, 289, 451
BciT130I CCWGG 2 cut(s) 233, 536
BciVI GTATCC 1 cut(s) 540
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 1 cut(s) 659
BfaI CTAG 3 cut(s) 372, 408, 909
BfmI CTRYAG 1 cut(s) 243
BfuAI ACCTGC 2 cut(s) 236, 727
BfuI GTATCC 1 cut(s) 540
BisI GCNGC 4 cut(s) 46, 708, 897, 919
BlsI GCNGC 4 cut(s) 47, 709, 898, 920
BmcAI AGTACT 1 cut(s) 728
Bme1390I CCNGG 3 cut(s) 233, 431, 536
Bme18I GGWCC 3 cut(s) 278, 343, 879
BmgT120I GGNCC 6 cut(s) 163, 164, 278, 343, 583, 879
BmiI GGNNCC 3 cut(s) 165, 279, 584
BmrFI CCNGG 3 cut(s) 233, 431, 536
BmrI ACTGGG 1 cut(s) 552
BmsI GCATC 1 cut(s) 340
BmuI ACTGGG 1 cut(s) 552
BpiI GAAGAC 2 cut(s) 106, 840
Bpu10I CCTNAGC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 310
BpuMI CCSGG 1 cut(s) 431
Bsa29I ATCGAT 1 cut(s) 866
BsaBI GATNNNNATC 1 cut(s) 551
BsaJI CCNNGG 4 cut(s) 430, 534, 570, 717
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 173, 352, 436, 888
Bse118I RCCGGY 1 cut(s) 937
Bse1I ACTGG 1 cut(s) 547
Bse8I GATNNNNATC 1 cut(s) 551
BseBI CCWGG 2 cut(s) 233, 536
BseCI ATCGAT 1 cut(s) 866
BseDI CCNNGG 4 cut(s) 430, 534, 570, 717
BseGI GGATG 3 cut(s) 46, 284, 954
BseJI GATNNNNATC 1 cut(s) 551
BseLI CCNNNNNNNGG 5 cut(s) 110, 173, 352, 436, 888
BseMII CTCAG 2 cut(s) 27, 215
BseNI ACTGG 1 cut(s) 547
BseSI GKGCMC 2 cut(s) 167, 510
BseXI GCAGC 3 cut(s) 57, 694, 883
BsgI GTGCAG 1 cut(s) 320
BshFI GGCC 5 cut(s) 165, 429, 585, 746, 921
BshVI ATCGAT 1 cut(s) 866
BsiHKAI GWGCWC 3 cut(s) 202, 328, 792
BsiSI CCGG 2 cut(s) 430, 938
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 5 cut(s) 110, 173, 352, 436, 888
BsmAI GTCTC 1 cut(s) 659
BsmBI CGTCTC 1 cut(s) 659
BsmFI GGGAC 1 cut(s) 291
BsnI GGCC 5 cut(s) 165, 429, 585, 746, 921
Bsp120I GGGCCC 1 cut(s) 163
Bsp1286I GDGCHC 5 cut(s) 167, 202, 328, 510, 792
Bsp143I GATC 5 cut(s) 460, 700, 858, 863, 867
BspACI CCGC 2 cut(s) 353, 918
BspANI GGCC 5 cut(s) 165, 429, 585, 746, 921
BspCNI CTCAG 2 cut(s) 28, 214
BspDI ATCGAT 1 cut(s) 866
BspLI GGNNCC 3 cut(s) 165, 279, 584
BspMAI CTGCAG 1 cut(s) 247
BspMI ACCTGC 2 cut(s) 236, 727
BspPI GGATC 1 cut(s) 468
BsrBI CCGCTC 1 cut(s) 918
BsrFI RCCGGY 1 cut(s) 937
BsrI ACTGG 1 cut(s) 547
BssAI RCCGGY 1 cut(s) 937
BssECI CCNNGG 4 cut(s) 430, 534, 570, 717
BssMI GATC 5 cut(s) 460, 700, 858, 863, 867
BssT1I CCWWGG 2 cut(s) 570, 717
Bst2UI CCWGG 2 cut(s) 233, 536
Bst4CI ACNGT 3 cut(s) 84, 226, 662
Bst6I CTCTTC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 686
BstDEI CTNAG 2 cut(s) 36, 201
BstF5I GGATG 3 cut(s) 46, 284, 954
BstKTI GATC 5 cut(s) 463, 703, 861, 866, 870
BstMAI GTCTC 1 cut(s) 659
BstMBI GATC 5 cut(s) 460, 700, 858, 863, 867
BstMWI GCNNNNNNNGC 2 cut(s) 413, 918
BstNI CCWGG 2 cut(s) 233, 536
BstSCI CCNGG 3 cut(s) 231, 429, 534
BstSFI CTRYAG 1 cut(s) 243
BstSLI GKGCMC 2 cut(s) 167, 510
BstV1I GCAGC 3 cut(s) 57, 694, 883
BstV2I GAAGAC 2 cut(s) 106, 840
BstX2I RGATCY 1 cut(s) 460
BstXI CCANNNNNNTGG 1 cut(s) 542
BstYI RGATCY 1 cut(s) 460
Bsu15I ATCGAT 1 cut(s) 866
BsuI GTATCC 1 cut(s) 540
BsuRI GGCC 5 cut(s) 165, 429, 585, 746, 921
BsuTUI ATCGAT 1 cut(s) 866
BtsCI GGATG 3 cut(s) 46, 284, 954
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 240
BveI ACCTGC 2 cut(s) 236, 727
Cac8I GCNNGC 1 cut(s) 686
CaiI CAGNNNCTG 1 cut(s) 173
Cfr10I RCCGGY 1 cut(s) 937
Cfr13I GGNCC 6 cut(s) 163, 164, 278, 343, 583, 879
ClaI ATCGAT 1 cut(s) 866
Csp6I GTAC 2 cut(s) 30, 727
CviAII CATG 5 cut(s) 329, 389, 496, 598, 871
CviQI GTAC 2 cut(s) 30, 727
DdeI CTNAG 2 cut(s) 36, 201
DpnI GATC 5 cut(s) 462, 702, 860, 865, 869
DpnII GATC 5 cut(s) 460, 700, 858, 863, 867
EaeI YGGCCR 1 cut(s) 919
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Ecl136II GAGCTC 3 cut(s) 200, 326, 790
Eco130I CCWWGG 2 cut(s) 570, 717
Eco24I GRGCYC 4 cut(s) 167, 202, 328, 792
Eco47I GGWCC 3 cut(s) 278, 343, 879
Eco53kI GAGCTC 3 cut(s) 200, 326, 790
EcoICRI GAGCTC 3 cut(s) 200, 326, 790
EcoRII CCWGG 2 cut(s) 231, 534
EcoT14I CCWWGG 2 cut(s) 570, 717
EcoT38I GRGCYC 4 cut(s) 167, 202, 328, 792
ErhI CCWWGG 2 cut(s) 570, 717
Esp3I CGTCTC 1 cut(s) 659
FaeI CATG 5 cut(s) 332, 392, 499, 601, 874
FalI AAGNNNNNCTT 4 cut(s) 107, 139, 821, 853
FaqI GGGAC 1 cut(s) 291
FatI CATG 5 cut(s) 328, 388, 495, 597, 870
FauNDI CATATG 1 cut(s) 619
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 4 cut(s) 46, 708, 897, 919
FokI GGATG 3 cut(s) 53, 271, 961
FriOI GRGCYC 4 cut(s) 167, 202, 328, 792
Fsp4HI GCNGC 4 cut(s) 46, 708, 897, 919
FspBI CTAG 3 cut(s) 372, 408, 909
GluI GCNGC 4 cut(s) 46, 708, 897, 919
HaeIII GGCC 5 cut(s) 165, 429, 585, 746, 921
HapII CCGG 2 cut(s) 430, 938
Hin1II CATG 5 cut(s) 332, 392, 499, 601, 874
HincII GTYRAC 3 cut(s) 120, 238, 645
HindII GTYRAC 3 cut(s) 120, 238, 645
HinfI GANTC 2 cut(s) 188, 313
HpaII CCGG 2 cut(s) 430, 938
HphI GGTGA 2 cut(s) 550, 751
Hpy166II GTNNAC 5 cut(s) 120, 238, 266, 451, 645
Hpy188I TCNGA 3 cut(s) 796, 863, 958
Hpy188III TCNNGA 2 cut(s) 520, 636
Hpy8I GTNNAC 5 cut(s) 120, 238, 266, 451, 645
Hpy99I CGWCG 1 cut(s) 887
HpyAV CCTTC 7 cut(s) 20, 209, 268, 419, 573, 736, 823
HpyCH4III ACNGT 3 cut(s) 84, 226, 662
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 7 cut(s) 245, 256, 301, 365, 601, 874, 899
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 918
HpyF3I CTNAG 2 cut(s) 36, 201
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 5 cut(s) 332, 392, 499, 601, 874
Kzo9I GATC 5 cut(s) 460, 700, 858, 863, 867
LmnI GCTCC 1 cut(s) 9
Lsp1109I GCAGC 3 cut(s) 57, 694, 883
LweI GCATC 1 cut(s) 340
MaeI CTAG 3 cut(s) 372, 408, 909
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 2 cut(s) 138, 538
MalI GATC 5 cut(s) 462, 702, 860, 865, 869
MbiI CCGCTC 1 cut(s) 918
MboI GATC 5 cut(s) 460, 700, 858, 863, 867
MboII GAAGA 8 cut(s) 35, 111, 158, 322, 368, 434, 793, 845
MfeI CAATTG 1 cut(s) 90
MflI RGATCY 1 cut(s) 460
MhlI GDGCHC 5 cut(s) 167, 202, 328, 510, 792
MluCI AATT 7 cut(s) 77, 90, 192, 367, 479, 501, 924
MmeI TCCRAC 1 cut(s) 981
MnlI CCTC 7 cut(s) 31, 55, 254, 464, 568, 762, 870
MseI TTAA 4 cut(s) 14, 467, 723, 815
MslI CAYNNNNRTG 2 cut(s) 591, 737
MspI CCGG 2 cut(s) 430, 938
MspR9I CCNGG 3 cut(s) 233, 431, 536
MunI CAATTG 1 cut(s) 90
MvaI CCWGG 2 cut(s) 233, 536
MwoI GCNNNNNNNGC 2 cut(s) 413, 918
NciI CCSGG 1 cut(s) 431
NdeI CATATG 1 cut(s) 619
NdeII GATC 5 cut(s) 460, 700, 858, 863, 867
NlaIII CATG 5 cut(s) 332, 392, 499, 601, 874
NlaIV GGNNCC 3 cut(s) 165, 279, 584
NmuCI GTSAC 1 cut(s) 538
OliI CACNNNNGTG 1 cut(s) 737
PaqCI CACCTGC 1 cut(s) 727
PcsI WCGNNNNNNNCGW 1 cut(s) 658
PfeI GAWTC 2 cut(s) 188, 313
PflFI GACNNNGTC 1 cut(s) 491
PflMI CCANNNNNTGG 2 cut(s) 110, 173
PkrI GCNGC 4 cut(s) 47, 709, 898, 920
Psp124BI GAGCTC 3 cut(s) 202, 328, 792
Psp6I CCWGG 2 cut(s) 231, 534
PspGI CCWGG 2 cut(s) 231, 534
PspN4I GGNNCC 3 cut(s) 165, 279, 584
PspOMI GGGCCC 1 cut(s) 163
PspPI GGNCC 6 cut(s) 163, 164, 278, 343, 583, 879
PstI CTGCAG 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 173
PsuI RGATCY 1 cut(s) 460
PsyI GACNNNGTC 1 cut(s) 491
RsaI GTAC 2 cut(s) 31, 728
RsaNI GTAC 2 cut(s) 30, 727
RseI CAYNNNNRTG 2 cut(s) 591, 737
SacI GAGCTC 3 cut(s) 202, 328, 792
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 4 cut(s) 14, 467, 723, 815
SatI GCNGC 4 cut(s) 46, 708, 897, 919
Sau3AI GATC 5 cut(s) 460, 700, 858, 863, 867
Sau96I GGNCC 6 cut(s) 163, 164, 278, 343, 583, 879
ScaI AGTACT 1 cut(s) 728
ScrFI CCNGG 3 cut(s) 233, 431, 536
SduI GDGCHC 5 cut(s) 167, 202, 328, 510, 792
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 243
SinI GGWCC 3 cut(s) 278, 343, 879
SmiMI CAYNNNNRTG 2 cut(s) 591, 737
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
Sse9I AATT 7 cut(s) 77, 90, 192, 367, 479, 501, 924
SsiI CCGC 2 cut(s) 353, 918
SspMI CTAG 3 cut(s) 372, 408, 909
SstI GAGCTC 3 cut(s) 202, 328, 792
StyD4I CCNGG 3 cut(s) 231, 429, 534
StyI CCWWGG 2 cut(s) 570, 717
TaaI ACNGT 3 cut(s) 84, 226, 662
TaiI ACGT 1 cut(s) 154
TaqI TCGA 3 cut(s) 237, 866, 885
TasI AATT 7 cut(s) 77, 90, 192, 367, 479, 501, 924
TatI WGTACW 1 cut(s) 726
TauI GCSGC 1 cut(s) 921
TfiI GAWTC 2 cut(s) 188, 313
Tru1I TTAA 4 cut(s) 14, 467, 723, 815
Tru9I TTAA 4 cut(s) 14, 467, 723, 815
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 3 cut(s) 45, 707, 896
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 4 cut(s) 36, 408, 550, 636
TspGWI ACGGA 1 cut(s) 871
TspRI CASTG 1 cut(s) 247
Tth111I GACNNNGTC 1 cut(s) 491
Van91I CCANNNNNTGG 2 cut(s) 110, 173
VpaK11BI GGWCC 3 cut(s) 278, 343, 879
XapI RAATTY 1 cut(s) 367
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 3 cut(s) 372, 408, 909
ZrmI AGTACT 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.