Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013184

Physical Location & Seq

Genomic Coordinates Reverse (-)

3764460 .. 3766124

Gene Structure 1665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGAAGCGTACAACCAGCCCAGATACCGACGAGCTTCGGCCACGAGCTTAGGGCTTGCCTCCGTTGCCGCCTCGTCAAGACCTACGATCAGTTCAGAGAATCAGGATGCGAGAACTGCCCATTCTTCAAGATGGAGGAAGATTTCGATCGTGTTGCCGATTGCACCACCCCCAATTTCAATGGGTTCGTCCTCCCTCCCTCCGTACTACTTACGGATCCAACTAGGAGTTGGGCTGCAAAATGGCTTCGACTTGGAAGATTTGTACCTGGTGTTTACACTCTTGCTGTTTCAGAGGTTCTTTCAGAGGATTTGCGGAATTTATGTGAAGATGAGCAGGTGCAATACGTACCACCCAAACGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032044 GO:0032784 GO:0032991 GO:0034243 GO:0034641 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spt4

Protein Analysis

123

Amino Acids

13.93

Weight (kDa)

5.4

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spt4	PF06093	17 - 98	6.9e-28	Spt4/RpoE2 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08565 AT5G08565 AT5G63670
fragaria_vesca	FvH4_4g10630
malus_domestica	MD04G1047800.v1.1 MD07G1114100.v1.1 MD09G1278200.v1.1 MD17G1271200.v1.1
prunus_persica	Prupe.3G015100_v2.0.a1
pyrus_communis	pycom04g04180
rosa_chinensis	RchiOBHm_Chr4g0406241
rosa_laevigata	RLG00000008786
rosa_multiflora	Rmu_ssc0000456.1_g000008
rosa_roxburghii	Rroxscaffold_5G00350980
rosa_rugosa	Rorug04G0067100
rosa_samantha	Rh4BG134100
rosa_wichuraiana	Rw4G011070 Rw4G011210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	328
Acc36I	ACCTGC	1 cut(s)	328
AciI	CCGC	2 cut(s)	70, 316
AclWI	GGATC	2 cut(s)	212, 225
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	319
AfaI	GTAC	4 cut(s)	12, 207, 267, 351
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	2 cut(s)	130, 181
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	2 cut(s)	36, 49
AluI	AGCT	2 cut(s)	36, 49
AlwI	GGATC	2 cut(s)	212, 225
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	319
BamHI	GGATCC	1 cut(s)	217
BauI	CACGAG	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	1 cut(s)	270
BfaI	CTAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	328
BisI	GCNGC	2 cut(s)	70, 237
BlsI	GCNGC	2 cut(s)	71, 238
Bme1390I	CCNGG	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	98
Bpu10I	CCTNAGC	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	147
Bse8I	GATNNNNATC	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	113
BseJI	GATNNNNATC	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	151
BsnI	GGCC	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	88, 148, 217
BspACI	CCGC	2 cut(s)	70, 316
BspANI	GGCC	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	219
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	2 cut(s)	212, 225
BssMI	GATC	3 cut(s)	88, 148, 217
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	270
BstBAI	YACGTR	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	113
BstKTI	GATC	3 cut(s)	91, 151, 220
BstMBI	GATC	3 cut(s)	88, 148, 217
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 117
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSNI	TACGTA	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	113
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	58
CsiI	ACCWGGT	1 cut(s)	268
Csp6I	GTAC	4 cut(s)	11, 206, 266, 350
CviJI	RGCY	7 cut(s)	20, 36, 42, 49, 56, 236, 247
CviKI_1	RGCY	7 cut(s)	20, 36, 42, 49, 56, 236, 247
CviQI	GTAC	4 cut(s)	11, 206, 266, 350
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	3 cut(s)	90, 150, 219
DpnII	GATC	3 cut(s)	88, 148, 217
EaeI	YGGCCR	1 cut(s)	40
Eco105I	TACGTA	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	268
FaiI	YATR	2 cut(s)	325, 367
Fnu4HI	GCNGC	2 cut(s)	70, 237
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	70, 237
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	2 cut(s)	70, 237
HaeIII	GGCC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	3 cut(s)	98, 295, 307
Hpy188III	TCNNGA	3 cut(s)	79, 105, 130
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	1 cut(s)	34
HpyCH4IV	ACGT	2 cut(s)	348, 361
HpyCH4V	TGCA	3 cut(s)	165, 239, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 117
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	2 cut(s)	348, 361
Kzo9I	GATC	3 cut(s)	88, 148, 217
LpnPI	CCDG	6 cut(s)	30, 35, 90, 255, 282, 323
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	98
MabI	ACCWGGT	1 cut(s)	268
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	2 cut(s)	348, 361
MalI	GATC	3 cut(s)	90, 150, 219
MboI	GATC	3 cut(s)	88, 148, 217
MboII	GAAGA	4 cut(s)	118, 152, 270, 341
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	2 cut(s)	175, 319
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	8 cut(s)	71, 83, 130, 203, 207, 211, 289, 301
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	2 cut(s)	66, 117
NdeII	GATC	3 cut(s)	88, 148, 217
NlaIV	GGNNCC	1 cut(s)	219
PaqCI	CACCTGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	71, 238
Ple19I	CGATCG	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	217
PvuI	CGATCG	1 cut(s)	151
RsaI	GTAC	4 cut(s)	12, 207, 267, 351
RsaNI	GTAC	4 cut(s)	11, 206, 266, 350
SatI	GCNGC	2 cut(s)	70, 237
Sau3AI	GATC	3 cut(s)	88, 148, 217
ScrFI	CCNGG	1 cut(s)	270
SetI	ASST	8 cut(s)	38, 51, 86, 271, 300, 342, 351, 364
SexAI	ACCWGGT	1 cut(s)	268
SfaNI	GCATC	1 cut(s)	98
SnaBI	TACGTA	1 cut(s)	349
Sse9I	AATT	2 cut(s)	175, 319
SsiI	CCGC	2 cut(s)	70, 316
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	268
TaiI	ACGT	2 cut(s)	351, 364
TaqI	TCGA	2 cut(s)	147, 250
TasI	AATT	2 cut(s)	175, 319
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	236
TspGWI	ACGGA	3 cut(s)	53, 193, 230
XapI	RAATTY	1 cut(s)	319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	228
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.