Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009412

Physical Location & Seq

Genomic Coordinates Forward (+)

5535161 .. 5539673

Gene Structure 4513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2169 bp

ATGCTCTCTCGTATCGCCAAAACCTTATTTCCTAAACTACCCCTTCACTCTACACCCCGGCTTGCCCGACCCATGAGCTCCCAGCCGACTCAGCGCGCCTTCCAGCTCCGTGTCAACCCGCTCACCGGAAACTCCGAGTGGATCGTCATTGAGGAAGACGAACCAGAGGAACAAACTTTCAACAATCCCCAAAATGCCCTTCTCGCCACAACGTCGTATCTGGACATGCTCAACGACTCCACTCGAAACAGAGCATTCCGTGCAGCCATTGACAAGACCATCACCGCTCCCTGCCATGTTCTCGATATCGGTGCCGGAACTGGGTTGCTGTCGATGATGGCAGCGCGGGCAATGGGCCCAACGACATGCCGTATGGTTACTGCCTGCGAGTCTTACCTTCCCATGGTGAAGCTAATGAGGAAAGTGGTGCGCTTAAACGACATGGAAAACCAAATAAAGGTCATCAACAAACGCTCCGATGAGCTCGAAGTCGGAGTTGACGTCGCTTCTCGTGCTGACGTACTGGTTAGTGAGATTCTGGATTCTGAGTTGTTGGGAGAAGGGCTCATTCCAAGTTTACAGCATGCTCATGACATGTTGTTGGTGGAGAATCCCAAAACCGTGCCGTATAAGGCGACCACCTACGGCCAGCTTGTTGAGAGTACACTTTTATGGAAGCTTCATGATTTACATGGCAATGAGGAGAAAGCATCTGATGGGATTCATCTAGTTCCAACTGGGTTGGGTGATATTCTAGGTGTTAAGCCGCAACAGTATGCCTTTCACTGCAATGCGATAGAGAATGAAGTGAAACTGCTGTCCGAACCCTTCAAAATTTTTGAATTTGATTTTTGGAAACGGCCCGACAGTTGTGGGGAGACTGAGCTATTTGTGAAGGCAACTAAAGATGGTCGAGTTCATGCTGTAATTTCATGGTGGATACTTCAGCTTGATCGTGAAGGGACAATCTTTTATTCCACTGCCCCTAGGTGGATAAGTTTGCCAGCCAACATAAGTCATGGGGATTGGTGTGACCATTGGAAACAGTGTGTTTGGTTTGTTCCTGGTGAAGGTATGTCCATAACTAAGGATGAAGAGGTTTGCTTACATGCTGCTCATACAGAAACTAGCATCTCTTATAATCTCAAGAACCAATCTCCAAGAAATGAGACTCTACAGTATGGCCTCAAGAATGGGGAATTCAAACTCACACTACCCCCAGAAAGAATTGCAATTTACGGAGACAGTGAATGGAGGCATTCCATGTTTAGTGCCATAACTAAACCTTTACAGGGAAGAGTTGATCCGTTATGCATTGTTGCAGATGACAGCATCTTCTTAACACTCCTCGTTGCACATATTTCTAAAACATCACATGTGATGTCTTTCTTTCCGGGGTTGCAAGGCAAGGGTATTGGATATTTGCAAGCTGTTGCTAGTTCAAATGGTTTTTCAATGGATCGTGTAGAATTTATTAATAAGAGGAAAACAAAGTTGACCATGCATGACACACACCAAAAAAAGGTTGATCTATTGATTGGAGAACCTTTCTACCATGGAACGGATGGCATGCTTCCATGGCAAAACCTACGGTTTTGGAATGAACGGACAATGCTTGACTCTGTCCTATCTGAAGATGCATTGGTACTGCCATGTAAAGCGATATTAAAGGCTTGTGCCTTGTCTATCCCTGATCTTTGGAATAGTCGTCGCTGCTTAAGTAAGATTGAAGGTTTTGACCATTCAGTTGTAAATTCCACCTTAGGAGCATGTGGTGAATTACCTGCAGGGCAAGAGTCTCCTTGTCTGCCTTGTTTCATCTGGCAGTGTGGAAATGTTAGGAAGCTCAGTGGAGAATTTACGCTCATGGAGTTTGATTGTTCAAAACATATAACGCCATCTTATGGAGAAACCCAGGTTGAATTTACGGAGCCTGGGATATGCCATGGATTTGCACTCTGGATTGATTGGGTGATGGATTCGGAGAACTCCCTTGTGTTCTCTACAGGGCCAGAAAAGAGATATTGGAAGCAAGGAGTAAAGCTTCTGGCCAAGCCTGTAGCAGTTAGAAATAATGAATCGAGTATGGGAGAAAGTCGGTCTGCAATAATTCAAGCGTCGTTTGATCCATCAAACGGTGACCTCAACATCAGACATGATTTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019918 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035241 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PrmA

Protein Analysis

723

Amino Acids

81.04

Weight (kDa)

5.88

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16570
fragaria_vesca	FvH4_5g18820 FvH4_5g18820 FvH4_5g18820 FvH4_5g18820 FvH4_5g18820 FvH4_5g18820
malus_domestica	MD04G1063800.v1.1
prunus_persica	Prupe.5G069000_v2.0.a1 Prupe.5G069000_v2.0.a1
pyrus_communis	pycom04g05760
rosa_chinensis	RchiOBHm_Chr7g0203171
rosa_laevigata	RLG00000003546
rosa_multiflora	Rmu_sc0005566.1_g000011 Rmu_sc0014667.1_g000003
rosa_roxburghii	Rroxscaffold_3G00254020
rosa_rugosa	Rorug07G0074800
rosa_samantha	Rh7AG204000 Rh7BG203300 Rh7CG214900 Rh7DG210700
rosa_wichuraiana	Rw7G017780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1140
AatII	GACGTC	1 cut(s)	504
Acc36I	ACCTGC	1 cut(s)	1792
AccB1I	GGYRCC	1 cut(s)	311
AccB7I	CCANNNNNTGG	1 cut(s)	1904
AccBSI	CCGCTC	2 cut(s)	121, 287
AccII	CGCG	2 cut(s)	96, 346
AciI	CCGC	4 cut(s)	119, 285, 346, 767
AclWI	GGATC	4 cut(s)	149, 1298, 1467, 2120
AcoI	YGGCCR	2 cut(s)	646, 2049
AcsI	RAATTY	7 cut(s)	834, 842, 1199, 1469, 1753, 1856, 1922
AcuI	CTGAAG	2 cut(s)	929, 1653
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	3 cut(s)	522, 664, 1647
AflII	CTTAAG	1 cut(s)	1717
AflIII	ACRYGT	2 cut(s)	594, 1375
AjnI	CCWGG	3 cut(s)	1063, 1914, 1933
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
Alw21I	GWGCWC	2 cut(s)	80, 486
Alw26I	GTCTC	4 cut(s)	872, 1163, 1236, 1803
AlwI	GGATC	4 cut(s)	149, 1298, 1467, 2120
AoxI	GGCC	6 cut(s)	355, 646, 860, 1183, 2009, 2049
ApaI	GGGCCC	1 cut(s)	359
ApeKI	GCWGC	4 cut(s)	263, 341, 1112, 1713
ApoI	RAATTY	7 cut(s)	834, 842, 1199, 1469, 1753, 1856, 1922
AseI	ATTAAT	1 cut(s)	1476
AspA2I	CCTAGG	1 cut(s)	986
AspLEI	GCGC	4 cut(s)	96, 98, 346, 432
AspS9I	GGNCC	4 cut(s)	355, 356, 861, 2009
AsuC2I	CCSGG	2 cut(s)	58, 1395
AsuHPI	GGTGA	8 cut(s)	115, 274, 418, 758, 1079, 1787, 1984, 2150
AvrII	CCTAGG	1 cut(s)	986
AxyI	CCTNAGG	1 cut(s)	1762
BaeGI	GKGCMC	1 cut(s)	359
BalI	TGGCCA	1 cut(s)	2051
BanI	GGYRCC	1 cut(s)	311
BanII	GRGCYC	4 cut(s)	80, 359, 486, 567
BauI	CACGAG	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	2 cut(s)	80, 486
BbvI	GCAGC	4 cut(s)	275, 353, 1099, 1700
BccI	CCATC	8 cut(s)	287, 331, 710, 902, 1559, 1906, 1969, 2137
BceAI	ACGGC	4 cut(s)	354, 610, 661, 875
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	3 cut(s)	1065, 1916, 1935
BciVI	GTATCC	1 cut(s)	933
BcnI	CCSGG	2 cut(s)	58, 1395
BcoDI	GTCTC	4 cut(s)	872, 1163, 1236, 1803
BfaI	CTAG	5 cut(s)	728, 755, 987, 1128, 1437
BfmI	CTRYAG	4 cut(s)	1175, 1785, 2004, 2058
BfrI	CTTAAG	1 cut(s)	1717
BfuAI	ACCTGC	1 cut(s)	1792
BfuI	GTATCC	1 cut(s)	933
BisI	GCNGC	5 cut(s)	264, 342, 767, 1113, 1714
BlnI	CCTAGG	1 cut(s)	986
BlsI	GCNGC	5 cut(s)	265, 343, 768, 1114, 1715
Bme1390I	CCNGG	5 cut(s)	58, 1065, 1395, 1916, 1935
BmgT120I	GGNCC	4 cut(s)	355, 356, 861, 2009
BmiI	GGNNCC	3 cut(s)	313, 357, 1932
BmrFI	CCNGG	5 cut(s)	58, 1065, 1395, 1916, 1935
BmrI	ACTGGG	2 cut(s)	330, 747
BmsI	GCATC	4 cut(s)	719, 1140, 1341, 1627
BmuI	ACTGGG	2 cut(s)	330, 747
BpiI	GAAGAC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	549, 581
BpuEI	CTTGAG	2 cut(s)	1130, 1172
BpuMI	CCSGG	2 cut(s)	58, 1395
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	9 cut(s)	56, 402, 986, 1394, 1555, 1577, 1914, 1934, 1945
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	4 cut(s)	458, 486, 488, 516
Bse1I	ACTGG	3 cut(s)	325, 528, 742
Bse21I	CCTNAGG	1 cut(s)	1762
Bse3DI	GCAATG	3 cut(s)	357, 703, 796
BseBI	CCWGG	3 cut(s)	1065, 1916, 1935
BseDI	CCNNGG	9 cut(s)	56, 402, 986, 1394, 1555, 1577, 1914, 1934, 1945
BseGI	GGATG	2 cut(s)	1096, 1570
BseMI	GCAATG	3 cut(s)	357, 703, 796
BseMII	CTCAG	4 cut(s)	104, 537, 873, 1861
BseNI	ACTGG	3 cut(s)	325, 528, 742
BsePI	GCGCGC	1 cut(s)	94
BseRI	GAGGAG	2 cut(s)	716, 1337
BseSI	GKGCMC	1 cut(s)	359
BseXI	GCAGC	4 cut(s)	275, 353, 1099, 1700
BseYI	CCCAGC	1 cut(s)	81
BsgI	GTGCAG	1 cut(s)	282
Bsh1236I	CGCG	2 cut(s)	96, 346
BshFI	GGCC	6 cut(s)	357, 648, 862, 1185, 2011, 2051
BshNI	GGYRCC	1 cut(s)	311
BsiHKAI	GWGCWC	2 cut(s)	80, 486
BsiSI	CCGG	4 cut(s)	58, 126, 315, 1394
BslFI	GGGAC	1 cut(s)	976
BsmAI	GTCTC	4 cut(s)	872, 1163, 1236, 1803
BsmFI	GGGAC	1 cut(s)	976
BsmI	GAATGC	2 cut(s)	254, 1258
BsnI	GGCC	6 cut(s)	357, 648, 862, 1185, 2011, 2051
Bsp120I	GGGCCC	1 cut(s)	355
Bsp1286I	GDGCHC	4 cut(s)	80, 359, 486, 567
Bsp143I	GATC	7 cut(s)	141, 952, 1303, 1459, 1528, 1693, 2125
Bsp19I	CCATGG	4 cut(s)	402, 1555, 1577, 1945
BspACI	CCGC	4 cut(s)	119, 285, 346, 767
BspANI	GGCC	6 cut(s)	357, 648, 862, 1185, 2011, 2051
BspCNI	CTCAG	4 cut(s)	103, 538, 874, 1860
BspFNI	CGCG	2 cut(s)	96, 346
BspHI	TCATGA	2 cut(s)	589, 682
BspLI	GGNNCC	3 cut(s)	313, 357, 1932
BspMAI	CTGCAG	1 cut(s)	1789
BspMI	ACCTGC	1 cut(s)	1792
BspPI	GGATC	4 cut(s)	149, 1298, 1467, 2120
BspT107I	GGYRCC	1 cut(s)	311
BspTI	CTTAAG	1 cut(s)	1717
BsrBI	CCGCTC	2 cut(s)	121, 287
BsrDI	GCAATG	3 cut(s)	357, 703, 796
BsrI	ACTGG	3 cut(s)	325, 528, 742
BssECI	CCNNGG	9 cut(s)	56, 402, 986, 1394, 1555, 1577, 1914, 1934, 1945
BssHII	GCGCGC	1 cut(s)	94
BssMI	GATC	7 cut(s)	141, 952, 1303, 1459, 1528, 1693, 2125
BssNI	GRCGYC	1 cut(s)	501
BssSI	CACGAG	1 cut(s)	510
BssT1I	CCWWGG	5 cut(s)	402, 986, 1555, 1577, 1945
Bst2BI	CACGAG	1 cut(s)	510
Bst2UI	CCWGG	3 cut(s)	1065, 1916, 1935
Bst4CI	ACNGT	8 cut(s)	622, 774, 869, 1047, 1179, 1247, 1593, 2138
Bst6I	CTCTTC	2 cut(s)	1089, 1291
BstACI	GRCGYC	1 cut(s)	501
BstAFI	CTTAAG	1 cut(s)	1717
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	9 cut(s)	63, 96, 348, 385, 585, 650, 1005, 1428, 1571
BstDEI	CTNAG	6 cut(s)	90, 546, 882, 1086, 1762, 1847
BstDSI	CCRYGG	4 cut(s)	402, 1555, 1577, 1945
BstEII	GGTNACC	1 cut(s)	2138
BstENI	CCTNNNNNAGG	1 cut(s)	1068
BstF5I	GGATG	2 cut(s)	1096, 1570
BstFNI	CGCG	2 cut(s)	96, 346
BstHHI	GCGC	4 cut(s)	96, 98, 346, 432
BstKTI	GATC	7 cut(s)	144, 955, 1306, 1462, 1531, 1696, 2128
BstMAI	GTCTC	4 cut(s)	872, 1163, 1236, 1803
BstMBI	GATC	7 cut(s)	141, 952, 1303, 1459, 1528, 1693, 2125
BstMWI	GCNNNNNNNGC	6 cut(s)	91, 203, 260, 347, 512, 1579
BstNI	CCWGG	3 cut(s)	1065, 1916, 1935
BstNSI	RCATGY	8 cut(s)	229, 369, 587, 598, 1112, 1379, 1573, 1773
BstPI	GGTNACC	1 cut(s)	2138
BstSCI	CCNGG	5 cut(s)	56, 1063, 1393, 1914, 1933
BstSFI	CTRYAG	4 cut(s)	1175, 1785, 2004, 2058
BstSLI	GKGCMC	1 cut(s)	359
BstUI	CGCG	2 cut(s)	96, 346
BstV1I	GCAGC	4 cut(s)	275, 353, 1099, 1700
BstV2I	GAAGAC	1 cut(s)	162
Bsu36I	CCTNAGG	1 cut(s)	1762
BsuI	GTATCC	1 cut(s)	933
BsuRI	GGCC	6 cut(s)	357, 648, 862, 1185, 2011, 2051
BtgI	CCRYGG	4 cut(s)	402, 1555, 1577, 1945
BtsCI	GGATG	2 cut(s)	1096, 1570
BtsI	GCAGTG	3 cut(s)	784, 978, 1832
BtsIMutI	CAGTG	6 cut(s)	784, 978, 1052, 1252, 1832, 1855
BveI	ACCTGC	1 cut(s)	1792
Cac8I	GCNNGC	9 cut(s)	63, 96, 348, 385, 585, 650, 1005, 1428, 1571
CciI	TCATGA	2 cut(s)	589, 682
CfoI	GCGC	4 cut(s)	96, 98, 346, 432
Cfr13I	GGNCC	4 cut(s)	355, 356, 861, 2009
CseI	GACGC	1 cut(s)	2106
Csp6I	GTAC	3 cut(s)	521, 663, 1646
CviQI	GTAC	3 cut(s)	521, 663, 1646
DdeI	CTNAG	6 cut(s)	90, 546, 882, 1086, 1762, 1847
DpnI	GATC	7 cut(s)	143, 954, 1305, 1461, 1530, 1695, 2127
DpnII	GATC	7 cut(s)	141, 952, 1303, 1459, 1528, 1693, 2125
EaeI	YGGCCR	2 cut(s)	646, 2049
Eam1104I	CTCTTC	2 cut(s)	1089, 1291
EarI	CTCTTC	2 cut(s)	1089, 1291
Ecl136II	GAGCTC	2 cut(s)	78, 484
Eco130I	CCWWGG	5 cut(s)	402, 986, 1555, 1577, 1945
Eco24I	GRGCYC	4 cut(s)	80, 359, 486, 567
Eco32I	GATATC	1 cut(s)	307
Eco53kI	GAGCTC	2 cut(s)	78, 484
Eco57I	CTGAAG	2 cut(s)	929, 1653
Eco81I	CCTNAGG	1 cut(s)	1762
Eco91I	GGTNACC	1 cut(s)	2138
EcoICRI	GAGCTC	2 cut(s)	78, 484
EcoNI	CCTNNNNNAGG	1 cut(s)	1068
EcoO65I	GGTNACC	1 cut(s)	2138
EcoRI	GAATTC	1 cut(s)	1199
EcoRII	CCWGG	3 cut(s)	1063, 1914, 1933
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	5 cut(s)	402, 986, 1555, 1577, 1945
EcoT22I	ATGCAT	3 cut(s)	1316, 1506, 1642
EcoT38I	GRGCYC	4 cut(s)	80, 359, 486, 567
ErhI	CCWWGG	5 cut(s)	402, 986, 1555, 1577, 1945
FaqI	GGGAC	1 cut(s)	976
FauI	CCCGC	2 cut(s)	126, 339
Fnu4HI	GCNGC	5 cut(s)	264, 342, 767, 1113, 1714
FokI	GGATG	2 cut(s)	1103, 1577
FriOI	GRGCYC	4 cut(s)	80, 359, 486, 567
Fsp4HI	GCNGC	5 cut(s)	264, 342, 767, 1113, 1714
FspBI	CTAG	5 cut(s)	728, 755, 987, 1128, 1437
GlaI	GCGC	4 cut(s)	95, 97, 345, 431
GluI	GCNGC	5 cut(s)	264, 342, 767, 1113, 1714
GsaI	CCCAGC	1 cut(s)	85
HaeIII	GGCC	6 cut(s)	357, 648, 862, 1185, 2011, 2051
HapII	CCGG	4 cut(s)	58, 126, 315, 1394
HgaI	GACGC	1 cut(s)	2106
HhaI	GCGC	4 cut(s)	96, 98, 346, 432
Hin1I	GRCGYC	1 cut(s)	501
Hin6I	GCGC	4 cut(s)	94, 96, 344, 430
HinP1I	GCGC	4 cut(s)	94, 96, 344, 430
HincII	GTYRAC	3 cut(s)	115, 499, 1497
HindII	GTYRAC	3 cut(s)	115, 499, 1497
HindIII	AAGCTT	2 cut(s)	677, 2042
HpaII	CCGG	4 cut(s)	58, 126, 315, 1394
HphI	GGTGA	8 cut(s)	115, 274, 418, 758, 1079, 1787, 1984, 2150
Hpy166II	GTNNAC	5 cut(s)	115, 499, 578, 665, 1497
Hpy188I	TCNGA	9 cut(s)	136, 478, 494, 547, 715, 823, 1633, 1984, 2153
Hpy188III	TCNNGA	9 cut(s)	221, 302, 539, 590, 683, 956, 1147, 1189, 1960
Hpy8I	GTNNAC	5 cut(s)	115, 499, 578, 665, 1497
Hpy99I	CGWCG	4 cut(s)	217, 506, 1713, 2122
HpyCH4III	ACNGT	8 cut(s)	622, 774, 869, 1047, 1179, 1247, 1593, 2138
HpyCH4IV	ACGT	3 cut(s)	212, 501, 519
HpyF10VI	GCNNNNNNNGC	6 cut(s)	91, 203, 260, 347, 512, 1579
HpyF3I	CTNAG	6 cut(s)	90, 546, 882, 1086, 1762, 1847
HpySE526I	ACGT	3 cut(s)	212, 501, 519
Hsp92I	GRCGYC	1 cut(s)	501
HspAI	GCGC	4 cut(s)	94, 96, 344, 430
Kzo9I	GATC	7 cut(s)	141, 952, 1303, 1459, 1528, 1693, 2125
LmnI	GCTCC	6 cut(s)	83, 111, 292, 479, 1766, 1930
Lsp1109I	GCAGC	4 cut(s)	275, 353, 1099, 1700
LweI	GCATC	4 cut(s)	719, 1140, 1341, 1627
MaeI	CTAG	5 cut(s)	728, 755, 987, 1128, 1437
MaeII	ACGT	3 cut(s)	212, 501, 519
MaeIII	GTNAC	3 cut(s)	376, 1031, 2138
MalI	GATC	7 cut(s)	143, 954, 1305, 1461, 1530, 1695, 2127
MbiI	CCGCTC	2 cut(s)	121, 287
MboI	GATC	7 cut(s)	141, 952, 1303, 1459, 1528, 1693, 2125
MboII	GAAGA	5 cut(s)	167, 1106, 1308, 1327, 1646
MhlI	GDGCHC	4 cut(s)	80, 359, 486, 567
MlsI	TGGCCA	1 cut(s)	2051
MluNI	TGGCCA	1 cut(s)	2051
MlyI	GAGTC	6 cut(s)	82, 230, 398, 1165, 1613, 1805
MmeI	TCCRAC	2 cut(s)	472, 758
Mox20I	TGGCCA	1 cut(s)	2051
Mph1103I	ATGCAT	3 cut(s)	1316, 1506, 1642
MscI	TGGCCA	1 cut(s)	2051
MseI	TTAA	6 cut(s)	434, 762, 1340, 1476, 1667, 1718
MslI	CAYNNNNRTG	4 cut(s)	588, 670, 696, 789
Msp20I	TGGCCA	1 cut(s)	2051
MspCI	CTTAAG	1 cut(s)	1717
MspI	CCGG	4 cut(s)	58, 126, 315, 1394
MspR9I	CCNGG	5 cut(s)	58, 1065, 1395, 1916, 1935
Mva1269I	GAATGC	2 cut(s)	254, 1258
MvaI	CCWGG	3 cut(s)	1065, 1916, 1935
MvnI	CGCG	2 cut(s)	96, 346
MwoI	GCNNNNNNNGC	6 cut(s)	91, 203, 260, 347, 512, 1579
NciI	CCSGG	2 cut(s)	58, 1395
NcoI	CCATGG	4 cut(s)	402, 1555, 1577, 1945
NdeII	GATC	7 cut(s)	141, 952, 1303, 1459, 1528, 1693, 2125
NlaIV	GGNNCC	3 cut(s)	313, 357, 1932
NmuCI	GTSAC	2 cut(s)	1031, 2138
NsiI	ATGCAT	3 cut(s)	1316, 1506, 1642
NspI	RCATGY	8 cut(s)	229, 369, 587, 598, 1112, 1379, 1573, 1773
PaeI	GCATGC	2 cut(s)	587, 1573
PagI	TCATGA	2 cut(s)	589, 682
PauI	GCGCGC	1 cut(s)	94
PciI	ACATGT	2 cut(s)	594, 1375
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PctI	GAATGC	2 cut(s)	254, 1258
PfeI	GAWTC	6 cut(s)	535, 542, 610, 721, 1979, 2078
PflFI	GACNNNGTC	1 cut(s)	1622
PflMI	CCANNNNNTGG	1 cut(s)	1904
PkrI	GCNGC	5 cut(s)	265, 343, 768, 1114, 1715
PleI	GAGTC	6 cut(s)	82, 230, 397, 1165, 1613, 1804
PpsI	GAGTC	6 cut(s)	82, 230, 397, 1165, 1613, 1804
PscI	ACATGT	2 cut(s)	594, 1375
PshBI	ATTAAT	1 cut(s)	1476
PsiI	TTATAA	1 cut(s)	1140
Psp124BI	GAGCTC	2 cut(s)	80, 486
Psp6I	CCWGG	3 cut(s)	1063, 1914, 1933
PspEI	GGTNACC	1 cut(s)	2138
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	3 cut(s)	1063, 1914, 1933
PspN4I	GGNNCC	3 cut(s)	313, 357, 1932
PspOMI	GGGCCC	1 cut(s)	355
PspPI	GGNCC	4 cut(s)	355, 356, 861, 2009
PstI	CTGCAG	1 cut(s)	1789
PsyI	GACNNNGTC	1 cut(s)	1622
PteI	GCGCGC	1 cut(s)	94
RsaI	GTAC	3 cut(s)	522, 664, 1647
RsaNI	GTAC	3 cut(s)	521, 663, 1646
RseI	CAYNNNNRTG	4 cut(s)	588, 670, 696, 789
SacI	GAGCTC	2 cut(s)	80, 486
SaqAI	TTAA	6 cut(s)	434, 762, 1340, 1476, 1667, 1718
SatI	GCNGC	5 cut(s)	264, 342, 767, 1113, 1714
Sau3AI	GATC	7 cut(s)	141, 952, 1303, 1459, 1528, 1693, 2125
Sau96I	GGNCC	4 cut(s)	355, 356, 861, 2009
SbfI	CCTGCAGG	1 cut(s)	1789
SchI	GAGTC	6 cut(s)	82, 230, 398, 1165, 1613, 1805
ScrFI	CCNGG	5 cut(s)	58, 1065, 1395, 1916, 1935
SdaI	CCTGCAGG	1 cut(s)	1789
SduI	GDGCHC	4 cut(s)	80, 359, 486, 567
SfaNI	GCATC	4 cut(s)	719, 1140, 1341, 1627
SfcI	CTRYAG	4 cut(s)	1175, 1785, 2004, 2058
SmiMI	CAYNNNNRTG	4 cut(s)	588, 670, 696, 789
SmlI	CTYRAG	3 cut(s)	1145, 1187, 1717
SmoI	CTYRAG	3 cut(s)	1145, 1187, 1717
SphI	GCATGC	2 cut(s)	587, 1573
Sse8387I	CCTGCAGG	1 cut(s)	1789
SsiI	CCGC	4 cut(s)	119, 285, 346, 767
SspMI	CTAG	5 cut(s)	728, 755, 987, 1128, 1437
SstI	GAGCTC	2 cut(s)	80, 486
StyD4I	CCNGG	5 cut(s)	56, 1063, 1393, 1914, 1933
StyI	CCWWGG	5 cut(s)	402, 986, 1555, 1577, 1945
TaaI	ACNGT	8 cut(s)	622, 774, 869, 1047, 1179, 1247, 1593, 2138
TaiI	ACGT	3 cut(s)	215, 504, 522
TaqI	TCGA	6 cut(s)	244, 303, 332, 486, 913, 2081
TaqII	GACCGA	1 cut(s)	2088
TatI	WGTACW	1 cut(s)	662
TauI	GCSGC	1 cut(s)	769
TfiI	GAWTC	6 cut(s)	535, 542, 610, 721, 1979, 2078
Tru1I	TTAA	6 cut(s)	434, 762, 1340, 1476, 1667, 1718
Tru9I	TTAA	6 cut(s)	434, 762, 1340, 1476, 1667, 1718
TscAI	CASTG	6 cut(s)	791, 985, 1052, 1252, 1832, 1855
TseFI	GTSAC	2 cut(s)	1031, 2138
TseI	GCWGC	4 cut(s)	263, 341, 1112, 1713
Tsp45I	GTSAC	2 cut(s)	1031, 2138
TspDTI	ATGAA	9 cut(s)	671, 713, 819, 908, 921, 1107, 1617, 1807, 2091
TspGWI	ACGGA	7 cut(s)	98, 248, 1254, 1296, 1577, 1621, 1943
TspRI	CASTG	6 cut(s)	791, 985, 1052, 1252, 1832, 1855
Tth111I	GACNNNGTC	1 cut(s)	1622
Van91I	CCANNNNNTGG	1 cut(s)	1904
Vha464I	CTTAAG	1 cut(s)	1717
VspI	ATTAAT	1 cut(s)	1476
XagI	CCTNNNNNAGG	1 cut(s)	1068
XapI	RAATTY	7 cut(s)	834, 842, 1199, 1469, 1753, 1856, 1922
XceI	RCATGY	8 cut(s)	229, 369, 587, 598, 1112, 1379, 1573, 1773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1562
XmaJI	CCTAGG	1 cut(s)	986
XspI	CTAG	5 cut(s)	728, 755, 987, 1128, 1437
ZraI	GACGTC	1 cut(s)	502
Zsp2I	ATGCAT	3 cut(s)	1316, 1506, 1642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.