Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Forward (+)

5761728 .. 5767545

Gene Structure 5818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0074800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2349 bp

ATGGTGGAAATGGGTGAAGCTGAGAAAGGTTCAGTGATCAAAGAGAGGCTTAAGGGTCTTTGTGTTACTAATGGGTGGTCTTATGGGGTTTTGTGGCGTTTTGATCAGAGAAATTCCATGTTGTTGACTATGGGAGAAGCCTATTATGAAGAGCACATGGGAGCAGTGATTGAAAATATGCTTCCACAGGTCCACATGCTTGGAGAAGGTGTTTTAGGTAAAACTGCTTTCACTGGGAAGCACCAATGGATGCATTCAGATGCTTACAATGGACAGTGGAATTCATGCAATCCCATCGAAAGTTGTCGAGATTTGTTTCAGGATGATGCCGAGTTTCGTTGCCAATTTTCCTCTGGTATAAAGACAATTGCAACAGTCTCTGTGGAATCAGGAGTAATTCAGTTCGGTTCCACTGAAAAGATTATGGAGAGGTTGGAGTTTTTAGATGAAACAAAAAGGGTGTTCCGGGAGATCAAAAATCTTCATCGGCTTATTCCTCTAGCAAGTACACCCTCATGTTTGAACAATGAATCCAATGATCTAAATGAATTGTTTGCTTCCTTAATTTCATCTGCAAACTTTCATGGCGACGTTGCCAACATTCTTGGGGATAAATCAAAAGATGTAGGAGGAAATTGTTTATCTGCGATGAATTTACAGTCTGCAGCATCTGATGACATTGGCTCAGCTGATAAAACCCCGTGGTTTAGTACATGGAACTCTGATTCTTCTTTGTTGGCTTCATATGACTCACATTTGGCATCTGATATTGGGGTTCAGGATTCTCTCAAGACTTGCAGAAATACAGCTCAAGACTCAACTCTCATTCAAGGCAGCTGCGGATATCAGATGGATTACCAGCAATATCTACATGGATACCCTGTAGAGTTTAACCGAACTGATTGTATTACAGATGTTTCCAAATCATTTATGGATGATCTTTCTCAGTGGTTTGCTGCTTCACCCGAACAGAACTTCAATGGAATGGCAGCCACAATGAATGGTGACCTCTCGCAAGTGTTTGAAAGTACTTCGGTGTCACCTAGTCTGGTTAAAGGTGATACGATTATCAATGTACCAATTGAGCATCCAGCAACTTCTATGCAAAGTTCCATCACGAATGCATTCAGTGCTGATGCTCATGAGAAATCTGTGATCATTCAGAGTGCTGGAAATGATTTGTTTCATGGTCTGGGAACAGATTTCGGGTGTGGTCAAGTCAGCGATTGTTGGGAAGAGAGTATAATGCCAGTAGTTAGTGGTGGCTGCTTGGCTGCCAGTACTGATTTGACCAAAGAGCCAGAAGTTGGTTCTGCGGCTGGCCCCCGGAGAGGATTATTCTCAGAATTAGGACTAGAAGAGCTTTTAAATGGTATGAGTACTACCAGCTCTGTGACTAAATGCAGTGTAGAAGACCAATCATCCACCAGGAAAAGGAAATTAGAAAGTTCATCTATTGGCAGTAATCAGGTACAGTTAGCAAGGCTTGCTGGCTCTGGGGGGAGCATGCATTTGACGGGACCTTTGTATAACTTGGACAAGACAACCTGTCTTGTACCAAAGAAAGAGGTTCTCCCAAAATCACAGGTGGGCTTATGGATCGATGATAGCTACAGTGTCAATGCTAGAAGTGCGGCTCAAGCAAAACCACAGAAGGCTGAGGATCACACAAAGACCGCCAAGAAGAGGGCAAAGCCTGGAGAGAGTACTCGACCAAGGCCCAAGGATCGGCAGCAGATCCAAGACCGTATGAAAGACTTGAGGGGGATGATTCCCAATGGTGGCAAGCAGTGTAGCATTGATGCTTTGCTGGACCGCACCATCAAGTACATGATTTTCTTACAAGGTGTGACAAAACATGCTGATAAGCTTAAACAACCTCATGAGTCAAAGCTGACTGGAAAGGAGAATGGTGTGGTTCTAAAAGATCAGAGCAGTAGATCTGGTGGTAACAATACTTGGGCGTTAGCAGTTGAGGGTCAAAATGTGGTTTGCCCTATACTCGTCGAGGACCTTAGTACACCTGGCCAAATGCTTATTGAGATCCTCTGTGAAGAGCGTGGTTTCTTTCTCGAGTTAGCAGACGAAATACGGGGCTTCGGGTTGAATATCTTGAAGGGGGTGATGGAGAGTCGGGAGGATAAGATATGGGCATGCTTTATCGTTGAGGCAACTAGGCATGTAACCAGAATGGAAGTTTTTTGGTCCCTTGTCCGGCTTCTTCAGCAAAGTGGTACCAGTGTGGTTGATCCAACCAGTCGGCCCAGCAATGTAGTAGACAACGGTTTTCCTCCTGTGTTGGATAGTTTCCCGCCACGTAGTTTTCCTCCTCCCATCAGCTTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019918 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035241 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PrmA

Protein Analysis

782

Amino Acids

85.7

Weight (kDa)

5.29

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	14 - 51	5.6e-06	bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH-MYC_N	PF14215	60 - 155	1.3e-16	bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH_LHW	PF23176	571 - 632	8.4e-27	Transcription factor LHW bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2234
AccB1I	GGYRCC	1 cut(s)	2234
AccB7I	CCANNNNNTGG	1 cut(s)	1307
AccI	GTMKAC	1 cut(s)	2277
AciI	CCGC	6 cut(s)	840, 1316, 1634, 1677, 1816, 2312
AclWI	GGATC	6 cut(s)	1607, 1671, 1732, 1734, 2038, 2243
AcoI	YGGCCR	1 cut(s)	2026
AcsI	RAATTY	3 cut(s)	112, 280, 652
AcuI	CTGAAG	1 cut(s)	2207
AfiI	CCNNNNNNNGG	7 cut(s)	1307, 1331, 1434, 1686, 1728, 1781, 2214
AflII	CTTAAG	1 cut(s)	50
AgsI	TTSAA	7 cut(s)	173, 523, 830, 979, 1025, 2107, 2116
AhdI	GACNNNNNGTC	1 cut(s)	1548
AjnI	CCWGG	3 cut(s)	1427, 1696, 2023
AloI	GAACNNNNNNTCC	2 cut(s)	515, 547
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	382
AlwI	GGATC	6 cut(s)	1607, 1671, 1732, 1734, 2038, 2243
AlwNI	CAGNNNCTG	2 cut(s)	380, 671
Ama87I	CYCGRG	1 cut(s)	2072
AoxI	GGCC	4 cut(s)	1321, 1718, 2026, 2261
ApeKI	GCWGC	8 cut(s)	665, 834, 837, 956, 989, 1266, 1274, 1732
ApoI	RAATTY	3 cut(s)	112, 280, 652
ArsI	GACNNNNNNTTYG	2 cut(s)	1507, 1539
Asp700I	GAANNNNTTC	1 cut(s)	1124
Asp718I	GGTACC	1 cut(s)	2234
AspS9I	GGNCC	8 cut(s)	190, 1322, 1520, 1719, 1813, 2011, 2205, 2262
AsuC2I	CCSGG	2 cut(s)	467, 1327
AsuHPI	GGTGA	6 cut(s)	26, 954, 1016, 1032, 1070, 2134
AvaI	CYCGRG	1 cut(s)	2072
AvaII	GGWCC	5 cut(s)	190, 1520, 1813, 2011, 2205
BaeI	ACNNNNGTAYC	2 cut(s)	2226, 2259
BalI	TGGCCA	1 cut(s)	2028
BanI	GGYRCC	1 cut(s)	2234
BbsI	GAAGAC	1 cut(s)	1419
Bbv12I	GWGCWC	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	1659
BbvI	GCAGC	8 cut(s)	677, 824, 846, 943, 1001, 1253, 1261, 1744
BccI	CCATC	6 cut(s)	302, 844, 1121, 1829, 2119, 2342
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	3 cut(s)	1429, 1698, 2025
BciVI	GTATCC	1 cut(s)	869
BclI	TGATCA	3 cut(s)	36, 103, 1155
BcnI	CCSGG	2 cut(s)	467, 1327
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	5 cut(s)	500, 1044, 1355, 1626, 2175
BfmI	CTRYAG	3 cut(s)	663, 882, 1612
BfrI	CTTAAG	1 cut(s)	50
BfuI	GTATCC	1 cut(s)	869
BglII	AGATCT	1 cut(s)	1940
BlpI	GCTNAGC	1 cut(s)	685
BmcAI	AGTACT	4 cut(s)	1030, 1282, 1381, 1708
Bme1390I	CCNGG	5 cut(s)	467, 1327, 1429, 1698, 2025
Bme18I	GGWCC	5 cut(s)	190, 1520, 1813, 2011, 2205
BmeRI	GACNNNNNGTC	1 cut(s)	1548
BmeT110I	CYCGRG	1 cut(s)	2072
BmgT120I	GGNCC	8 cut(s)	190, 1322, 1520, 1719, 1813, 2011, 2205, 2262
BmiI	GGNNCC	5 cut(s)	409, 1324, 1521, 2207, 2236
BmrFI	CCNGG	5 cut(s)	467, 1327, 1429, 1698, 2025
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	8 cut(s)	240, 250, 316, 677, 770, 1096, 1126, 1792
BmuI	ACTGGG	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	1419
BpmI	CTGGAG	1 cut(s)	1719
Bpu10I	CCTNAGC	1 cut(s)	1659
Bpu1102I	GCTNAGC	1 cut(s)	685
BpuEI	CTTGAG	4 cut(s)	773, 795, 1623, 1780
BpuMI	CCSGG	2 cut(s)	467, 1327
Bsa29I	ATCGAT	1 cut(s)	1602
BsaAI	YACGTR	1 cut(s)	2318
BsaJI	CCNNGG	4 cut(s)	701, 1325, 1715, 1722
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	7 cut(s)	1307, 1331, 1434, 1686, 1728, 1781, 2214
Bse1I	ACTGG	6 cut(s)	238, 1250, 1278, 1903, 2238, 2256
Bse3DI	GCAATG	1 cut(s)	2275
BseBI	CCWGG	3 cut(s)	1429, 1698, 2025
BseCI	ATCGAT	1 cut(s)	1602
BseDI	CCNNGG	4 cut(s)	701, 1325, 1715, 1722
BseGI	GGATG	6 cut(s)	255, 328, 940, 1087, 1421, 1773
BseLI	CCNNNNNNNGG	7 cut(s)	1307, 1331, 1434, 1686, 1728, 1781, 2214
BseMI	GCAATG	1 cut(s)	2275
BseMII	CTCAG	5 cut(s)	12, 699, 959, 1356, 1650
BseNI	ACTGG	6 cut(s)	238, 1250, 1278, 1903, 2238, 2256
BseRI	GAGGAG	1 cut(s)	2319
BseXI	GCAGC	8 cut(s)	677, 824, 846, 943, 1001, 1253, 1261, 1744
BseYI	CCCAGC	1 cut(s)	2264
BshFI	GGCC	4 cut(s)	1323, 1720, 2028, 2263
BshNI	GGYRCC	1 cut(s)	2234
BshVI	ATCGAT	1 cut(s)	1602
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	2072
BsiSI	CCGG	3 cut(s)	466, 1327, 2215
BslFI	GGGAC	2 cut(s)	1533, 2191
BslI	CCNNNNNNNGG	7 cut(s)	1307, 1331, 1434, 1686, 1728, 1781, 2214
BsmAI	GTCTC	1 cut(s)	382
BsmFI	GGGAC	2 cut(s)	1533, 2191
BsmI	GAATGC	3 cut(s)	253, 1124, 1126
BsnI	GGCC	4 cut(s)	1323, 1720, 2028, 2263
BsoBI	CYCGRG	1 cut(s)	2072
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp1720I	GCTNAGC	1 cut(s)	685
BspACI	CCGC	6 cut(s)	840, 1316, 1634, 1677, 1816, 2312
BspANI	GGCC	4 cut(s)	1323, 1720, 2028, 2263
BspCNI	CTCAG	5 cut(s)	13, 698, 958, 1355, 1651
BspDI	ATCGAT	1 cut(s)	1602
BspHI	TCATGA	2 cut(s)	1141, 1882
BspLI	GGNNCC	5 cut(s)	409, 1324, 1521, 2207, 2236
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	6 cut(s)	1607, 1671, 1732, 1734, 2038, 2243
BspQI	GCTCTTC	3 cut(s)	144, 1353, 2049
BspT107I	GGYRCC	1 cut(s)	2234
BspTI	CTTAAG	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	2275
BsrI	ACTGG	6 cut(s)	238, 1250, 1278, 1903, 2238, 2256
BssECI	CCNNGG	4 cut(s)	701, 1325, 1715, 1722
BssT1I	CCWWGG	2 cut(s)	1715, 1722
Bst2UI	CCWGG	3 cut(s)	1429, 1698, 2025
Bst4CI	ACNGT	7 cut(s)	276, 376, 660, 1476, 1616, 1748, 2285
Bst6I	CTCTTC	5 cut(s)	144, 1230, 1353, 1679, 2049
BstAFI	CTTAAG	1 cut(s)	50
BstAPI	GCANNNNNTGC	2 cut(s)	1130, 1487
BstBAI	YACGTR	1 cut(s)	2318
BstC8I	GCNNGC	6 cut(s)	1321, 1488, 1492, 1508, 1787, 2155
BstDEI	CTNAG	6 cut(s)	21, 685, 945, 1342, 1659, 2015
BstDSI	CCRYGG	1 cut(s)	701
BstEII	GGTNACC	1 cut(s)	1004
BstF5I	GGATG	6 cut(s)	255, 328, 940, 1087, 1421, 1773
BstMAI	GTCTC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	5 cut(s)	1130, 1487, 1631, 1640, 2224
BstNI	CCWGG	3 cut(s)	1429, 1698, 2025
BstNSI	RCATGY	5 cut(s)	199, 1510, 1862, 2157, 2183
BstPI	GGTNACC	1 cut(s)	1004
BstSCI	CCNGG	5 cut(s)	465, 1325, 1427, 1696, 2023
BstSFI	CTRYAG	3 cut(s)	663, 882, 1612
BstV1I	GCAGC	8 cut(s)	677, 824, 846, 943, 1001, 1253, 1261, 1744
BstV2I	GAAGAC	1 cut(s)	1419
BstX2I	RGATCY	3 cut(s)	1737, 1940, 2043
BstXI	CCANNNNNNTGG	1 cut(s)	200
BstYI	RGATCY	3 cut(s)	1737, 1940, 2043
Bsu15I	ATCGAT	1 cut(s)	1602
BsuI	GTATCC	1 cut(s)	869
BsuRI	GGCC	4 cut(s)	1323, 1720, 2028, 2263
BsuTUI	ATCGAT	1 cut(s)	1602
BtgI	CCRYGG	1 cut(s)	701
BtgZI	GCGATG	1 cut(s)	662
BtsCI	GGATG	6 cut(s)	255, 328, 940, 1087, 1421, 1773
BtsI	GCAGTG	3 cut(s)	171, 1411, 1796
Cac8I	GCNNGC	6 cut(s)	1321, 1488, 1492, 1508, 1787, 2155
CaiI	CAGNNNCTG	2 cut(s)	380, 671
CciI	TCATGA	2 cut(s)	1141, 1882
Cfr13I	GGNCC	8 cut(s)	190, 1322, 1520, 1719, 1813, 2011, 2205, 2262
ClaI	ATCGAT	1 cut(s)	1602
DdeI	CTNAG	6 cut(s)	21, 685, 945, 1342, 1659, 2015
DraI	TTTAAA	1 cut(s)	1368
DriI	GACNNNNNGTC	1 cut(s)	1548
EaeI	YGGCCR	1 cut(s)	2026
Eam1104I	CTCTTC	5 cut(s)	144, 1230, 1353, 1679, 2049
Eam1105I	GACNNNNNGTC	1 cut(s)	1548
EarI	CTCTTC	5 cut(s)	144, 1230, 1353, 1679, 2049
Eco130I	CCWWGG	2 cut(s)	1715, 1722
Eco32I	GATATC	1 cut(s)	845
Eco47I	GGWCC	5 cut(s)	190, 1520, 1813, 2011, 2205
Eco57I	CTGAAG	1 cut(s)	2207
Eco88I	CYCGRG	1 cut(s)	2072
Eco91I	GGTNACC	1 cut(s)	1004
EcoO109I	RGGNCCY	2 cut(s)	1520, 2011
EcoO65I	GGTNACC	1 cut(s)	1004
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	3 cut(s)	1427, 1696, 2023
EcoRV	GATATC	1 cut(s)	845
EcoT14I	CCWWGG	2 cut(s)	1715, 1722
EcoT22I	ATGCAT	3 cut(s)	255, 1126, 1512
ErhI	CCWWGG	2 cut(s)	1715, 1722
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FaqI	GGGAC	2 cut(s)	1533, 2191
FauI	CCCGC	1 cut(s)	2319
FauNDI	CATATG	1 cut(s)	745
FbaI	TGATCA	3 cut(s)	36, 103, 1155
FblI	GTMKAC	1 cut(s)	2277
FokI	GGATG	6 cut(s)	262, 335, 947, 1074, 1408, 1780
FspBI	CTAG	5 cut(s)	500, 1044, 1355, 1626, 2175
GsaI	CCCAGC	1 cut(s)	2268
GsuI	CTGGAG	1 cut(s)	1719
HaeIII	GGCC	4 cut(s)	1323, 1720, 2028, 2263
HapII	CCGG	3 cut(s)	466, 1327, 2215
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HindIII	AAGCTT	1 cut(s)	1868
HinfI	GANTC	9 cut(s)	386, 530, 725, 749, 782, 815, 1771, 1886, 2131
HpaII	CCGG	3 cut(s)	466, 1327, 2215
HphI	GGTGA	6 cut(s)	26, 954, 1016, 1032, 1070, 2134
Hpy166II	GTNNAC	5 cut(s)	126, 193, 509, 2021, 2278
Hpy188I	TCNGA	9 cut(s)	108, 259, 673, 724, 766, 849, 1164, 1345, 1932
Hpy8I	GTNNAC	5 cut(s)	126, 193, 509, 2021, 2278
Hpy99I	CGWCG	2 cut(s)	593, 2009
HpyAV	CCTTC	3 cut(s)	200, 1648, 2110
HpyCH4III	ACNGT	7 cut(s)	276, 376, 660, 1476, 1616, 1748, 2285
HpyCH4IV	ACGT	2 cut(s)	591, 2317
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1130, 1487, 1631, 1640, 2224
HpyF3I	CTNAG	6 cut(s)	21, 685, 945, 1342, 1659, 2015
HpySE526I	ACGT	2 cut(s)	591, 2317
KpnI	GGTACC	1 cut(s)	2238
Ksp22I	TGATCA	3 cut(s)	36, 103, 1155
LguI	GCTCTTC	3 cut(s)	144, 1353, 2049
LmnI	GCTCC	2 cut(s)	161, 1503
Lsp1109I	GCAGC	8 cut(s)	677, 824, 846, 943, 1001, 1253, 1261, 1744
LweI	GCATC	8 cut(s)	240, 250, 316, 677, 770, 1096, 1126, 1792
MaeI	CTAG	5 cut(s)	500, 1044, 1355, 1626, 2175
MaeII	ACGT	2 cut(s)	591, 2317
MaeIII	GTNAC	7 cut(s)	64, 1004, 1038, 1393, 1849, 1949, 2182
MboII	GAAGA	9 cut(s)	161, 473, 720, 1247, 1370, 1424, 1696, 2066, 2213
MfeI	CAATTG	2 cut(s)	366, 1080
MflI	RGATCY	3 cut(s)	1737, 1940, 2043
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	2028
MluNI	TGGCCA	1 cut(s)	2028
MlyI	GAGTC	4 cut(s)	743, 809, 1895, 2140
MmeI	TCCRAC	3 cut(s)	414, 2276, 2280
Mox20I	TGGCCA	1 cut(s)	2028
Mph1103I	ATGCAT	3 cut(s)	255, 1126, 1512
MroXI	GAANNNNTTC	1 cut(s)	1124
MscI	TGGCCA	1 cut(s)	2028
MseI	TTAA	6 cut(s)	51, 563, 891, 1053, 1367, 1872
MslI	CAYNNNNRTG	2 cut(s)	258, 514
Msp20I	TGGCCA	1 cut(s)	2028
MspA1I	CMGCKG	2 cut(s)	689, 837
MspCI	CTTAAG	1 cut(s)	50
MspI	CCGG	3 cut(s)	466, 1327, 2215
MspR9I	CCNGG	5 cut(s)	467, 1327, 1429, 1698, 2025
MunI	CAATTG	2 cut(s)	366, 1080
Mva1269I	GAATGC	3 cut(s)	253, 1124, 1126
MvaI	CCWGG	3 cut(s)	1429, 1698, 2025
MwoI	GCNNNNNNNGC	5 cut(s)	1130, 1487, 1631, 1640, 2224
NciI	CCSGG	2 cut(s)	467, 1327
NdeI	CATATG	1 cut(s)	745
NlaIV	GGNNCC	5 cut(s)	409, 1324, 1521, 2207, 2236
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	4 cut(s)	1004, 1038, 1393, 1849
NsiI	ATGCAT	3 cut(s)	255, 1126, 1512
NspI	RCATGY	5 cut(s)	199, 1510, 1862, 2157, 2183
PaeI	GCATGC	2 cut(s)	1510, 2157
PaeR7I	CTCGAG	1 cut(s)	2072
PagI	TCATGA	2 cut(s)	1141, 1882
PciSI	GCTCTTC	3 cut(s)	144, 1353, 2049
PctI	GAATGC	3 cut(s)	253, 1124, 1126
PdmI	GAANNNNTTC	1 cut(s)	1124
PfeI	GAWTC	5 cut(s)	386, 530, 725, 782, 1771
PflMI	CCANNNNNTGG	1 cut(s)	1307
PfoI	TCCNGGA	1 cut(s)	465
PleI	GAGTC	4 cut(s)	743, 809, 1894, 2139
PpsI	GAGTC	4 cut(s)	743, 809, 1894, 2139
Ppu21I	YACGTR	1 cut(s)	2318
PpuMI	RGGWCCY	2 cut(s)	1520, 2011
Psp5II	RGGWCCY	2 cut(s)	1520, 2011
Psp6I	CCWGG	3 cut(s)	1427, 1696, 2023
PspEI	GGTNACC	1 cut(s)	1004
PspFI	CCCAGC	1 cut(s)	2264
PspGI	CCWGG	3 cut(s)	1427, 1696, 2023
PspN4I	GGNNCC	5 cut(s)	409, 1324, 1521, 2207, 2236
PspPI	GGNCC	8 cut(s)	190, 1322, 1520, 1719, 1813, 2011, 2205, 2262
PspPPI	RGGWCCY	2 cut(s)	1520, 2011
PstI	CTGCAG	1 cut(s)	667
PstNI	CAGNNNCTG	2 cut(s)	380, 671
PsuI	RGATCY	3 cut(s)	1737, 1940, 2043
PvuII	CAGCTG	2 cut(s)	689, 837
RseI	CAYNNNNRTG	2 cut(s)	258, 514
SapI	GCTCTTC	3 cut(s)	144, 1353, 2049
SaqAI	TTAA	6 cut(s)	51, 563, 891, 1053, 1367, 1872
Sau96I	GGNCC	8 cut(s)	190, 1322, 1520, 1719, 1813, 2011, 2205, 2262
ScaI	AGTACT	4 cut(s)	1030, 1282, 1381, 1708
SchI	GAGTC	4 cut(s)	743, 809, 1895, 2140
ScrFI	CCNGG	5 cut(s)	467, 1327, 1429, 1698, 2025
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	8 cut(s)	240, 250, 316, 677, 770, 1096, 1126, 1792
SfcI	CTRYAG	3 cut(s)	663, 882, 1612
Sfr274I	CTCGAG	1 cut(s)	2072
SinI	GGWCC	5 cut(s)	190, 1520, 1813, 2011, 2205
SlaI	CTCGAG	1 cut(s)	2072
SmiMI	CAYNNNNRTG	2 cut(s)	258, 514
SmlI	CTYRAG	6 cut(s)	50, 788, 810, 1638, 1759, 2072
SmoI	CTYRAG	6 cut(s)	50, 788, 810, 1638, 1759, 2072
SphI	GCATGC	2 cut(s)	1510, 2157
SsiI	CCGC	6 cut(s)	840, 1316, 1634, 1677, 1816, 2312
SspMI	CTAG	5 cut(s)	500, 1044, 1355, 1626, 2175
StyD4I	CCNGG	5 cut(s)	465, 1325, 1427, 1696, 2023
StyI	CCWWGG	2 cut(s)	1715, 1722
TaaI	ACNGT	7 cut(s)	276, 376, 660, 1476, 1616, 1748, 2285
TaiI	ACGT	2 cut(s)	594, 2320
TaqI	TCGA	6 cut(s)	297, 307, 1602, 1711, 2007, 2073
TatI	WGTACW	8 cut(s)	506, 710, 1028, 1280, 1379, 1706, 1827, 2018
TauI	GCSGC	2 cut(s)	1319, 1637
TfiI	GAWTC	5 cut(s)	386, 530, 725, 782, 1771
Tru1I	TTAA	6 cut(s)	51, 563, 891, 1053, 1367, 1872
Tru9I	TTAA	6 cut(s)	51, 563, 891, 1053, 1367, 1872
TseFI	GTSAC	4 cut(s)	1004, 1038, 1393, 1849
TseI	GCWGC	8 cut(s)	665, 834, 837, 956, 989, 1266, 1274, 1732
Tsp45I	GTSAC	4 cut(s)	1004, 1038, 1393, 1849
Van91I	CCANNNNNTGG	1 cut(s)	1307
Vha464I	CTTAAG	1 cut(s)	50
VpaK11BI	GGWCC	5 cut(s)	190, 1520, 1813, 2011, 2205
XapI	RAATTY	3 cut(s)	112, 280, 652
XceI	RCATGY	5 cut(s)	199, 1510, 1862, 2157, 2183
XcmI	CCANNNNNNNNNTGG	2 cut(s)	350, 928
XhoI	CTCGAG	1 cut(s)	2072
XmiI	GTMKAC	1 cut(s)	2277
XmnI	GAANNNNTTC	1 cut(s)	1124
XspI	CTAG	5 cut(s)	500, 1044, 1355, 1626, 2175
ZrmI	AGTACT	4 cut(s)	1030, 1282, 1381, 1708
Zsp2I	ATGCAT	3 cut(s)	255, 1126, 1512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.