Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Reverse (-)

9420651 .. 9421857

Gene Structure 1207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCAAGACTCTTCCTCTCACGAATCGCAACGTAACCTCCGGTCACCGGTGCCGGAGAAAACCGGAAAGAGTTCTAAGACTAAAAATGAGCAAAAAGGTGTTTCTAAACAACCAAATTTTCGTGGGGTCAGAATGAGACAATGGGGAAAATGGGTGTCTGAAATTAGAGAACCAAGAAAGAAATCAAGAATATGGCTCGGTACTTTCTCTACGCCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCTTTAGCCATCAAAGGTGGCTCTGCCCACCTTAATTTCCCGGAGCTAGCTTACCATTTGCCGAGACCGGCTAGCGCGGACCCTAAAGACATTCAAGAAGCCGCCGCCGCAGCAGCTGCCGTTGACTGGAAAGCACCGGAGTCTCCGTCTAGCACCGTGACGTCATCTCCAGTCGCCGACGACGCTTTCTCCGATCTTCCTGATCTTTTGCTTGACGTGAATGATCACAACAAAAACGATGGATTCTGGGACTCGTTTCCGTACGAAGATCCTTTCTTCTTGGAAAATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042546 GO:0043565 GO:0044085 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

179

Amino Acids

19.91

Weight (kDa)

6.21

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	38 - 88	1.7e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	410
AccB1I	GGYRCC	1 cut(s)	49
AccII	CGCG	2 cut(s)	229, 323
AciI	CCGC	6 cut(s)	224, 245, 323, 348, 351, 354
AclWI	GGATC	1 cut(s)	509
AcsI	RAATTY	1 cut(s)	115
AcyI	GRCGYC	1 cut(s)	407
AdeI	CACNNNGTG	1 cut(s)	241
AfaI	GTAC	2 cut(s)	202, 509
AfiI	CCNNNNNNNGG	2 cut(s)	46, 372
AgeI	ACCGGT	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	341
AjiI	CACGTC	2 cut(s)	241, 463
AluBI	AGCT	3 cut(s)	292, 296, 362
AluI	AGCT	3 cut(s)	292, 296, 362
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	3 cut(s)	130, 304, 393
Alw44I	GTGCAC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	509
AlwNI	CAGNNNCTG	1 cut(s)	362
ApaLI	GTGCAC	1 cut(s)	231
ApeKI	GCWGC	3 cut(s)	356, 359, 362
ApoI	RAATTY	1 cut(s)	115
AsiGI	ACCGGT	1 cut(s)	46
Asp700I	GAANNNNTTC	1 cut(s)	70
AspLEI	GCGC	2 cut(s)	229, 323
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	36
AsuNHI	GCTAGC	2 cut(s)	292, 317
AvaII	GGWCC	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	3 cut(s)	349, 368, 371
BccI	CCATC	3 cut(s)	214, 263, 479
BceAI	ACGGC	1 cut(s)	350
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	3 cut(s)	130, 304, 393
BfaI	CTAG	4 cut(s)	293, 318, 396, 538
BisI	GCNGC	8 cut(s)	225, 246, 348, 351, 354, 357, 360, 363
BlsI	GCNGC	8 cut(s)	226, 247, 349, 352, 355, 358, 361, 364
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	325
BmgBI	CACGTC	2 cut(s)	241, 463
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	2 cut(s)	51, 327
BmrFI	CCNGG	1 cut(s)	287
BmtI	GCTAGC	2 cut(s)	296, 321
BpmI	CTGGAG	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	287
BsaHI	GRCGYC	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	304
BsaWI	WCCGGW	4 cut(s)	39, 46, 62, 382
BsaXI	ACNNNNNCTCC	8 cut(s)	21, 51, 377, 397, 407, 419, 427, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 372
Bse118I	RCCGGY	2 cut(s)	46, 313
Bse1I	ACTGG	2 cut(s)	377, 416
BseLI	CCNNNNNNNGG	2 cut(s)	46, 372
BseNI	ACTGG	2 cut(s)	377, 416
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	3 cut(s)	349, 368, 371
Bsh1236I	CGCG	2 cut(s)	229, 323
BshNI	GGYRCC	1 cut(s)	49
BshTI	ACCGGT	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	8 cut(s)	40, 47, 53, 63, 215, 287, 314, 383
BsiWI	CGTACG	1 cut(s)	507
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	46, 372
BsmAI	GTCTC	3 cut(s)	130, 304, 393
BsmFI	GGGAC	1 cut(s)	509
Bso31I	GGTCTC	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	4 cut(s)	439, 448, 469, 514
BspACI	CCGC	6 cut(s)	224, 245, 323, 348, 351, 354
BspFNI	CGCG	2 cut(s)	229, 323
BspLI	GGNNCC	2 cut(s)	51, 327
BspOI	GCTAGC	2 cut(s)	296, 321
BspPI	GGATC	1 cut(s)	509
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	304
BsrFI	RCCGGY	2 cut(s)	46, 313
BsrI	ACTGG	2 cut(s)	377, 416
BssAI	RCCGGY	2 cut(s)	46, 313
BssMI	GATC	4 cut(s)	439, 448, 469, 514
BssNI	GRCGYC	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	16
BstACI	GRCGYC	1 cut(s)	407
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	3 cut(s)	231, 294, 319
BstDEI	CTNAG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	42
BstFNI	CGCG	2 cut(s)	229, 323
BstHHI	GCGC	2 cut(s)	229, 323
BstKTI	GATC	4 cut(s)	442, 451, 472, 517
BstMAI	GTCTC	3 cut(s)	130, 304, 393
BstMBI	GATC	4 cut(s)	439, 448, 469, 514
BstMWI	GCNNNNNNNGC	7 cut(s)	230, 251, 353, 356, 359, 362, 428
BstPI	GGTNACC	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	235
BstUI	CGCG	2 cut(s)	229, 323
BstV1I	GCAGC	3 cut(s)	349, 368, 371
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BtrI	CACGTC	2 cut(s)	241, 463
Cac8I	GCNNGC	3 cut(s)	231, 294, 319
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	2 cut(s)	229, 323
Cfr10I	RCCGGY	2 cut(s)	46, 313
Cfr13I	GGNCC	1 cut(s)	325
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	2 cut(s)	201, 508
CspAI	ACCGGT	1 cut(s)	46
CviJI	RGCY	9 cut(s)	196, 248, 254, 267, 292, 296, 317, 347, 362
CviKI_1	RGCY	9 cut(s)	196, 248, 254, 267, 292, 296, 317, 347, 362
CviQI	GTAC	2 cut(s)	201, 508
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	4 cut(s)	441, 450, 471, 516
DpnII	GATC	4 cut(s)	439, 448, 469, 514
DraIII	CACNNNGTG	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	325
Eco91I	GGTNACC	1 cut(s)	42
EcoO65I	GGTNACC	1 cut(s)	42
FaiI	YATR	1 cut(s)	193
FaqI	GGGAC	1 cut(s)	509
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	8 cut(s)	225, 246, 348, 351, 354, 357, 360, 363
Fsp4HI	GCNGC	8 cut(s)	225, 246, 348, 351, 354, 357, 360, 363
FspBI	CTAG	4 cut(s)	293, 318, 396, 538
GlaI	GCGC	2 cut(s)	228, 322
GluI	GCNGC	8 cut(s)	225, 246, 348, 351, 354, 357, 360, 363
GsuI	CTGGAG	1 cut(s)	399
HapII	CCGG	8 cut(s)	40, 47, 53, 63, 215, 287, 314, 383
HgaI	GACGC	1 cut(s)	437
HhaI	GCGC	2 cut(s)	229, 323
Hin1I	GRCGYC	1 cut(s)	407
Hin6I	GCGC	2 cut(s)	227, 321
HinP1I	GCGC	2 cut(s)	227, 321
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	5 cut(s)	8, 23, 386, 489, 497
HpaII	CCGG	8 cut(s)	40, 47, 53, 63, 215, 287, 314, 383
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	2 cut(s)	233, 370
Hpy188I	TCNGA	3 cut(s)	131, 160, 439
Hpy188III	TCNNGA	4 cut(s)	20, 186, 341, 446
Hpy8I	GTNNAC	2 cut(s)	233, 370
Hpy99I	CGWCG	3 cut(s)	242, 428, 431
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	4 cut(s)	31, 240, 407, 462
HpyCH4V	TGCA	2 cut(s)	4, 233
HpyF10VI	GCNNNNNNNGC	7 cut(s)	230, 251, 353, 356, 359, 362, 428
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	4 cut(s)	31, 240, 407, 462
Hsp92I	GRCGYC	1 cut(s)	407
HspAI	GCGC	2 cut(s)	227, 321
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	439, 448, 469, 514
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	3 cut(s)	349, 368, 371
MaeI	CTAG	4 cut(s)	293, 318, 396, 538
MaeII	ACGT	4 cut(s)	31, 240, 407, 462
MaeIII	GTNAC	3 cut(s)	32, 42, 403
MalI	GATC	4 cut(s)	441, 450, 471, 516
MboI	GATC	4 cut(s)	439, 448, 469, 514
MboII	GAAGA	4 cut(s)	3, 434, 514, 524
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	4 cut(s)	115, 162, 280, 532
MlyI	GAGTC	3 cut(s)	2, 395, 491
MnlI	CCTC	2 cut(s)	25, 47
MroXI	GAANNNNTTC	1 cut(s)	70
MseI	TTAA	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	8 cut(s)	40, 47, 53, 63, 215, 287, 314, 383
MspR9I	CCNGG	1 cut(s)	287
MvnI	CGCG	2 cut(s)	229, 323
MwoI	GCNNNNNNNGC	7 cut(s)	230, 251, 353, 356, 359, 362, 428
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	4 cut(s)	439, 448, 469, 514
NheI	GCTAGC	2 cut(s)	292, 317
NlaIV	GGNNCC	2 cut(s)	51, 327
NmeAIII	GCCGAG	1 cut(s)	333
NmuCI	GTSAC	2 cut(s)	42, 403
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	23, 489
Pfl23II	CGTACG	1 cut(s)	507
PfoI	TCCNGGA	1 cut(s)	285
PinAI	ACCGGT	1 cut(s)	46
PkrI	GCNGC	8 cut(s)	226, 247, 349, 352, 355, 358, 361, 364
PleI	GAGTC	3 cut(s)	2, 394, 491
PpsI	GAGTC	3 cut(s)	2, 394, 491
PspEI	GGTNACC	1 cut(s)	42
PspLI	CGTACG	1 cut(s)	507
PspN4I	GGNNCC	2 cut(s)	51, 327
PspPI	GGNCC	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	514
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	202, 509
RsaNI	GTAC	2 cut(s)	201, 508
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	8 cut(s)	225, 246, 348, 351, 354, 357, 360, 363
Sau3AI	GATC	4 cut(s)	439, 448, 469, 514
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	3 cut(s)	2, 395, 491
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	235
SgrAI	CRCCGGYG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	325
Sse9I	AATT	4 cut(s)	115, 162, 280, 532
SsiI	CCGC	6 cut(s)	224, 245, 323, 348, 351, 354
SspMI	CTAG	4 cut(s)	293, 318, 396, 538
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	4 cut(s)	34, 243, 410, 465
TasI	AATT	4 cut(s)	115, 162, 280, 532
TauI	GCSGC	5 cut(s)	227, 248, 350, 353, 356
TfiI	GAWTC	2 cut(s)	23, 489
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseFI	GTSAC	2 cut(s)	42, 403
TseI	GCWGC	3 cut(s)	356, 359, 362
Tsp45I	GTSAC	2 cut(s)	42, 403
TspGWI	ACGGA	2 cut(s)	381, 495
VneI	GTGCAC	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	70
XspI	CTAG	4 cut(s)	293, 318, 396, 538
ZraI	GACGTC	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.