Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003146

Physical Location & Seq

Genomic Coordinates Forward (+)

15005064 .. 15006034

Gene Structure 971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAACGTGACGACTGCCGGAGATTTCAGGACTCGCCGGCGCAGACGACGGAGAGAAGAGTGAAATATAAACCAAAGAAGAAAAGAGCCAAAGATGATGATGATGAGAAAGTTGTTTCGAAGCATCCAAATTTTCGAGGTGTCAGAATGAGACAATGGGGAAAATGGGTGTCCGAAATCAGAGAGCCAAAAAAGAAATCAAGAATCTGGCTCGGTACTTTCTCCACGGCGGAGATGGCGGCGCGTGCTCACGACGTGGCAGCTTTAGCCATCAAAGGCGGTTCTGCACATCTCAACTTCCCGGAGCTCGCTTATCACCTCCCTAGACCAGCTAGTGCCGACCCTAAAGACATCCAAGCTGCCGCCGCCGCAGCTGCAGCCGCTGTGGCCATTGACATGGATGTAGAGACGTCTTCGCCGTCGCCATCTCCCACAGTTACGGAAACGTCATCTCCGGCTATGATAGCACTCTCCGACGACGCGTTCTCCGATCTTCCTGATCTCTTGCTCAACGTGAACCATAACATCGATGGCTTCTGGGACTCTTTTCCCTATGAAGAACCCTTCCTCTCTCAAAGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042546 GO:0043565 GO:0044085 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

194

Amino Acids

21.62

Weight (kDa)

6.22

Isoelectric Point (pI)

56.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	43 - 93	4.3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77200 AT2G25820 AT2G35700 AT3G16280 AT3G16280 AT3G60490 AT4G16750 AT4G32800
fragaria_vesca	FvH4_5g19440 FvH4_5g19460
malus_domestica	MD04G1060400.v1.1 MD06G1053600.v1.1
prunus_persica	Prupe.5G065300_v2.0.a1
pyrus_communis	pycom04g05400 pycom06g04520
rosa_chinensis	RchiOBHm_Chr7g0203971 RchiOBHm_Chr7g0204031
rosa_laevigata	RLG00000003493 RLG00000003495
rosa_multiflora	Rmu_sc0001311.1_g000005 Rmu_sc0001843.1_g000006 Rmu_sc0004074.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253410 Rroxscaffold_3G00253430
rosa_rugosa	Rorug07G0074800 Rorug07G0079700 Rorug07G0080000
rosa_samantha	Rh7AG209700 Rh7AG210000 Rh7BG203400 Rh7BG208400 Rh7BG208500 Rh7CG222200 Rh7CG222500 Rh7DG216700
rosa_wichuraiana	Rw7G018260 Rw7G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	413
AccII	CGCG	2 cut(s)	244, 482
AciI	CCGC	7 cut(s)	230, 239, 279, 363, 366, 369, 381
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	130
AcyI	GRCGYC	1 cut(s)	410
AdeI	CACNNNGTG	1 cut(s)	256
AfaI	GTAC	1 cut(s)	217
AflIII	ACRYGT	1 cut(s)	480
AjiI	CACGTC	1 cut(s)	256
AluBI	AGCT	5 cut(s)	263, 307, 332, 359, 374
AluI	AGCT	5 cut(s)	263, 307, 332, 359, 374
Alw21I	GWGCWC	2 cut(s)	250, 309
Alw26I	GTCTC	2 cut(s)	145, 401
AlwNI	CAGNNNCTG	1 cut(s)	383
AoxI	GGCC	1 cut(s)	387
ApeKI	GCWGC	5 cut(s)	260, 359, 371, 374, 377
ApoI	RAATTY	1 cut(s)	130
AspLEI	GCGC	2 cut(s)	43, 244
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	308
AsuII	TTCGAA	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	2 cut(s)	250, 309
BbvI	GCAGC	5 cut(s)	272, 346, 361, 383, 389
BccI	CCATC	4 cut(s)	229, 278, 433, 524
BceAI	ACGGC	2 cut(s)	243, 403
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	145, 401
BfaI	CTAG	3 cut(s)	324, 333, 583
BfmI	CTRYAG	1 cut(s)	375
BglI	GCCNNNNNGGC	1 cut(s)	386
Bme1390I	CCNGG	1 cut(s)	302
BmgBI	CACGTC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	405
Bpu14I	TTCGAA	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	302
Bsa29I	ATCGAT	1 cut(s)	528
BsaHI	GRCGYC	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	225
BsaXI	ACNNNNNCTCC	4 cut(s)	436, 466, 470, 500
Bse118I	RCCGGY	1 cut(s)	37
BseCI	ATCGAT	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	3 cut(s)	124, 351, 406
BseXI	GCAGC	5 cut(s)	272, 346, 361, 383, 389
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	2 cut(s)	244, 482
BshFI	GGCC	1 cut(s)	389
BshVI	ATCGAT	1 cut(s)	528
BsiHKAI	GWGCWC	2 cut(s)	250, 309
BsiSI	CCGG	4 cut(s)	19, 38, 302, 455
BslFI	GGGAC	1 cut(s)	554
BsmAI	GTCTC	2 cut(s)	145, 401
BsmBI	CGTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	250, 309
Bsp143I	GATC	2 cut(s)	490, 499
BspACI	CCGC	7 cut(s)	230, 239, 279, 363, 366, 369, 381
BspANI	GGCC	1 cut(s)	389
BspDI	ATCGAT	1 cut(s)	528
BspFNI	CGCG	2 cut(s)	244, 482
BspMAI	CTGCAG	1 cut(s)	379
BspT104I	TTCGAA	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	2 cut(s)	490, 499
BssNI	GRCGYC	1 cut(s)	410
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	410
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	3 cut(s)	39, 246, 309
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	3 cut(s)	124, 351, 406
BstFNI	CGCG	2 cut(s)	244, 482
BstHHI	GCGC	2 cut(s)	43, 244
BstKTI	GATC	2 cut(s)	493, 502
BstMAI	GTCTC	2 cut(s)	145, 401
BstMBI	GATC	2 cut(s)	490, 499
BstSCI	CCNGG	1 cut(s)	300
BstSFI	CTRYAG	1 cut(s)	375
BstUI	CGCG	2 cut(s)	244, 482
BstV1I	GCAGC	5 cut(s)	272, 346, 361, 383, 389
BstV2I	GAAGAC	1 cut(s)	405
BstXI	CCANNNNNNTGG	1 cut(s)	397
Bsu15I	ATCGAT	1 cut(s)	528
BsuRI	GGCC	1 cut(s)	389
BsuTUI	ATCGAT	1 cut(s)	528
BtgI	CCRYGG	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	3 cut(s)	124, 351, 406
Cac8I	GCNNGC	3 cut(s)	39, 246, 309
CaiI	CAGNNNCTG	1 cut(s)	383
CfoI	GCGC	2 cut(s)	43, 244
Cfr10I	RCCGGY	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	528
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	1 cut(s)	397
CviQI	GTAC	1 cut(s)	216
DpnI	GATC	2 cut(s)	492, 501
DpnII	GATC	2 cut(s)	490, 499
DraIII	CACNNNGTG	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
EciI	GGCGGA	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	401
FaeI	CATG	1 cut(s)	400
FaiI	YATR	5 cut(s)	69, 398, 461, 522, 555
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	1 cut(s)	396
FokI	GGATG	3 cut(s)	111, 338, 413
FriOI	GRGCYC	1 cut(s)	309
FspBI	CTAG	3 cut(s)	324, 333, 583
GlaI	GCGC	2 cut(s)	42, 243
HaeIII	GGCC	1 cut(s)	389
HapII	CCGG	4 cut(s)	19, 38, 302, 455
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	2 cut(s)	43, 244
Hin1I	GRCGYC	1 cut(s)	410
Hin1II	CATG	1 cut(s)	400
Hin6I	GCGC	2 cut(s)	41, 242
HinP1I	GCGC	2 cut(s)	41, 242
HinfI	GANTC	3 cut(s)	32, 204, 542
HpaII	CCGG	4 cut(s)	19, 38, 302, 455
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	5 cut(s)	146, 175, 182, 475, 490
Hpy188III	TCNNGA	4 cut(s)	29, 201, 251, 497
Hpy8I	GTNNAC	1 cut(s)	517
Hpy99I	CGWCG	5 cut(s)	52, 257, 424, 479, 482
HpyAV	CCTTC	1 cut(s)	574
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	5 cut(s)	7, 255, 410, 446, 513
HpyCH4V	TGCA	2 cut(s)	287, 377
HpySE526I	ACGT	5 cut(s)	7, 255, 410, 446, 513
Hsp92I	GRCGYC	1 cut(s)	410
Hsp92II	CATG	1 cut(s)	400
HspAI	GCGC	2 cut(s)	41, 242
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	490, 499
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	9 cut(s)	14, 32, 51, 193, 315, 342, 468, 510, 523
Lsp1109I	GCAGC	5 cut(s)	272, 346, 361, 383, 389
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	3 cut(s)	324, 333, 583
MaeII	ACGT	5 cut(s)	7, 255, 410, 446, 513
MaeIII	GTNAC	3 cut(s)	8, 436, 578
MalI	GATC	2 cut(s)	492, 501
MboI	GATC	2 cut(s)	490, 499
MboII	GAAGA	5 cut(s)	69, 91, 405, 485, 569
MhlI	GDGCHC	2 cut(s)	250, 309
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	1 cut(s)	130
MluI	ACGCGT	1 cut(s)	480
MluNI	TGGCCA	1 cut(s)	389
MlyI	GAGTC	2 cut(s)	26, 536
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	3 cut(s)	131, 329, 578
Mox20I	TGGCCA	1 cut(s)	389
MreI	CGCCGGCG	1 cut(s)	37
MroNI	GCCGGC	1 cut(s)	37
MscI	TGGCCA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	395
Msp20I	TGGCCA	1 cut(s)	389
MspA1I	CMGCKG	2 cut(s)	374, 383
MspI	CCGG	4 cut(s)	19, 38, 302, 455
MspR9I	CCNGG	1 cut(s)	302
MvnI	CGCG	2 cut(s)	244, 482
NaeI	GCCGGC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	2 cut(s)	490, 499
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	8
NspV	TTCGAA	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	2 cut(s)	416, 486
PdiI	GCCGGC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	204
PfoI	TCCNGGA	1 cut(s)	300
PleI	GAGTC	2 cut(s)	26, 536
PpsI	GAGTC	2 cut(s)	26, 536
Psp124BI	GAGCTC	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	383
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	490, 499
SchI	GAGTC	2 cut(s)	26, 536
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	2 cut(s)	250, 309
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	375
SfuI	TTCGAA	1 cut(s)	119
SgrAI	CRCCGGYG	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	130
SsiI	CCGC	7 cut(s)	230, 239, 279, 363, 366, 369, 381
SspMI	CTAG	3 cut(s)	324, 333, 583
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	5 cut(s)	10, 258, 413, 449, 516
TaqI	TCGA	3 cut(s)	119, 136, 528
TasI	AATT	1 cut(s)	130
TauI	GCSGC	5 cut(s)	242, 365, 368, 371, 383
TfiI	GAWTC	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	5 cut(s)	260, 359, 371, 374, 377
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	570
TspGWI	ACGGA	2 cut(s)	65, 455
XapI	RAATTY	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	2 cut(s)	232, 527
XspI	CTAG	3 cut(s)	324, 333, 583
ZraI	GACGTC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.